|
Name |
Accession |
Description |
Interval |
E-value |
| AtpD |
COG0055 |
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP ... |
1-214 |
4.06e-167 |
|
FoF1-type ATP synthase, beta subunit [Energy production and conversion]; FoF1-type ATP synthase, beta subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439825 [Multi-domain] Cd Length: 468 Bit Score: 468.03 E-value: 4.06e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:COG0055 61 DSTDGLVRGMEVIDTGAPISVPVGEATLGRIFNVLGEPIDGKGPIEAKERRPIHRPAPPFEEQSTKTEILETGIKVIDLL 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNR 160
Cdd:COG0055 141 APYAKGGKIGLFGGAGVGKTVLIMELIHNIAKEHGGVSVFAGVGERTREGNDLYREMKESGVLDKTALVFGQMNEPPGAR 220
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490432852 161 LRVALTGLTMAEKFRD-EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:COG0055 221 LRVALTALTMAEYFRDeEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 275
|
|
| atpD |
TIGR01039 |
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are ... |
1-214 |
4.37e-155 |
|
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 211621 [Multi-domain] Cd Length: 461 Bit Score: 437.61 E-value: 4.37e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:TIGR01039 58 GSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNR 160
Cdd:TIGR01039 138 APYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGAR 217
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490432852 161 LRVALTGLTMAEKFRDE-GRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:TIGR01039 218 MRVALTGLTMAEYFRDEqGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPT 272
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
20-214 |
1.50e-140 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 393.51 E-value: 1.50e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 20 EVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGK 99
Cdd:cd01133 1 SVPVGEETLGRIFNVLGEPIDERGPIKAKERWPIHREAPEFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 100 TVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNV-----LDKVSLVYGQMNEPPGNRLRVALTGLTMAEKF 174
Cdd:cd01133 81 TVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVinldgLSKVALVYGQMNEPPGARARVALTGLTMAEYF 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490432852 175 RD-EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:cd01133 161 RDeEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPT 201
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
2-214 |
1.60e-125 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 363.59 E-value: 1.60e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 2 SSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMC 81
Cdd:CHL00060 77 ATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 82 PFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLD-------KVSLVYGQMN 154
Cdd:CHL00060 157 PYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINeqniaesKVALVYGQMN 236
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490432852 155 EPPGNRLRVALTGLTMAEKFRDEGR-DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKqDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPT 297
|
|
| alt_F1F0_F1_bet |
TIGR03305 |
alternate F1F0 ATPase, F1 subunit beta; A small number of taxonomically diverse prokaryotic ... |
2-214 |
3.25e-92 |
|
alternate F1F0 ATPase, F1 subunit beta; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Pssm-ID: 132348 [Multi-domain] Cd Length: 449 Bit Score: 277.09 E-value: 3.25e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 2 SSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMC 81
Cdd:TIGR03305 54 PTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLV 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 82 PFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRL 161
Cdd:TIGR03305 134 PLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490432852 162 RVALTGLTMAEKFR-DEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:TIGR03305 214 RVGHTALTMAEYFRdDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPT 267
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
21-214 |
5.99e-90 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 265.09 E-value: 5.99e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 21 VPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKT 100
Cdd:cd19476 2 VPVGPELLGRILDGLGEPLDGLPPIKTKQRRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGKT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 101 VNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRD 180
Cdd:cd19476 82 VLAMQLARNQAKAHAGVVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQH 161
|
170 180 190
....*....|....*....|....*....|....
gi 490432852 181 VLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:cd19476 162 VLLIIDDISRYAEALREMSALLGEPPGREGYPPY 195
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
73-214 |
1.11e-61 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 191.42 E-value: 1.11e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 73 GIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAiehSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQ 152
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQAS---ADVVVYALIGERGREVREFIEELLGSGALKRTVVVVAT 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490432852 153 MNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:pfam00006 78 SDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPS 139
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
20-214 |
2.21e-42 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 143.85 E-value: 2.21e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 20 EVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGK 99
Cdd:cd01136 1 SIPVGDGLLGRVIDALGEPLDGKGLPDEPERRPLIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 100 TVNMMELIRNIAiehSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGR 179
Cdd:cd01136 81 STLLGMIARNTD---ADVNVIALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQGK 157
|
170 180 190
....*....|....*....|....*....|....*
gi 490432852 180 DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:cd01136 158 KVLLLMDSLTRFAMAQREVGLAAGEPPTRRGYPPS 192
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
1-214 |
2.31e-42 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 147.87 E-value: 2.31e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:COG1157 72 GDLEGISPGARVVPTGRPLSVPVGDGLLGRVLDGLGRPLDGKGPLPGEERRPLDAPPPNPLERARITEPLDTGVRAIDGL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEhsgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNR 160
Cdd:COG1157 152 LTVGRGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEDDLGEEGLARSVVVVATSDEPPLMR 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490432852 161 LRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:COG1157 229 LRAAYTATAIAEYFRDQGKNVLLLMDSLTRFAMAQREIGLAAGEPPATRGYPPS 282
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
1-211 |
1.34e-33 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 124.34 E-value: 1.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKG----DIGEEERWAIHRAAPSYEELSSSQELLETGIKV 76
Cdd:PRK08149 62 GNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDapptVGPISEERVIDVAPPSYAERRPIREPLITGVRA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 77 ID--LMCpfAKGGKVGLFGGAGVGKTVNMmelirNIAIEHSGYSVF--AGVGERTREGNDFYHEMTDSNVLDKVSLVYGQ 152
Cdd:PRK08149 142 IDglLTC--GVGQRMGIFASAGCGKTSLM-----NMLIEHSEADVFviGLIGERGREVTEFVESLRASSRREKCVLVYAT 214
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490432852 153 MNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:PRK08149 215 SDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGY 273
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
4-214 |
5.91e-33 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 122.87 E-value: 5.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 4 DGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPF 83
Cdd:PRK08472 75 EGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTC 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 84 AKGGKVGLFGGAGVGKTVNMMELIRNiaiEHSGYSVFAGVGERTREGNDFYHEMTDSNvLDKVSLVYGQMNEPPGNRLRV 163
Cdd:PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKG---CLAPIKVVALIGERGREIPEFIEKNLGGD-LENTVIVVATSDDSPLMRKYG 230
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490432852 164 ALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK08472 231 AFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPS 281
|
|
| atpA |
TIGR00962 |
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha ... |
1-206 |
6.94e-32 |
|
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273365 [Multi-domain] Cd Length: 501 Bit Score: 120.57 E-value: 6.94e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:TIGR00962 76 GDYSDIREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFSPVEKIAPGVIERKSVHEPLQTGIKAIDAM 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNR 160
Cdd:TIGR00962 156 IPIGRGQRELIIGDRQTGKTAVAIDTIINQKDSDV-YCIYVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQ 234
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 490432852 161 LRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMP 206
Cdd:TIGR00962 235 YLAPYTGCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPP 280
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
1-214 |
1.46e-31 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 118.93 E-value: 1.46e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGE-EERWAIHRAAPSYEELSSSQELLETGIKVIDL 79
Cdd:PRK08927 72 GPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQgPVPYPLRAPPPPAHSRARVGEPLDLGVRALNT 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 80 MCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEhsgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGN 159
Cdd:PRK08927 152 FLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD---VSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALM 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490432852 160 RLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK08927 229 RRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPT 283
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
2-214 |
2.36e-31 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 118.38 E-value: 2.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 2 SSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERwAIHRAAPSYEELSSSQELLETGIKVIDLMC 81
Cdd:PRK06820 80 SSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPLTGQWR-ELDCPPPSPLTRQPIEQMLTTGIRAIDGIL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 82 PFAKGGKVGLFGGAGVGKTVnmmeLIRNIAiEHSGYSV--FAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGN 159
Cdd:PRK06820 159 SCGEGQRIGIFAAAGVGKST----LLGMLC-ADSAADVmvLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALE 233
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490432852 160 RLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK06820 234 RLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPS 288
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
29-214 |
4.03e-30 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 115.09 E-value: 4.03e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 29 GRIMNVLGQPIDMKGDIGE-EERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 107
Cdd:PRK06002 107 GRVINALGEPIDGLGPLAPgTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLA 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 108 RNIAIEHSgysVFAGVGERTREGNDFYHEMTDSNvLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDN 187
Cdd:PRK06002 187 RADAFDTV---VIALVGERGREVREFLEDTLADN-LKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDS 262
|
170 180
....*....|....*....|....*..
gi 490432852 188 IYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK06002 263 VTRFAHAAREVALAAGEPPVARGYPPS 289
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
5-214 |
9.56e-30 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 114.03 E-value: 9.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 5 GLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERwaIHRAAPSYEELSSSQ--ELLETGIKVIDLMCP 82
Cdd:PRK08972 81 GVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQR--ASRHSPPINPLSRRPitEPLDVGVRAINAMLT 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 83 FAKGGKVGLFGGAGVGKTVNMMELIRNIAIEhsgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLR 162
Cdd:PRK08972 159 VGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD---VIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 490432852 163 VALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPS 287
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
1-214 |
4.17e-28 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 109.86 E-value: 4.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:PRK09099 78 GELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEhsgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNR 160
Cdd:PRK09099 158 MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIER 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 490432852 161 LRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK09099 235 AKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPS 288
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
5-214 |
3.38e-27 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 107.28 E-value: 3.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 5 GLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFA 84
Cdd:PRK07196 74 GVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 85 KGGKVGLFGGAGVGKTVNMMELIRNIAIEhsgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVA 164
Cdd:PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQAD---VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKAT 230
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 490432852 165 LTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK07196 231 ELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPS 280
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
1-206 |
1.08e-26 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 106.15 E-value: 1.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:PRK13343 77 DDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDAL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVNMMELIrnIAIEHSG-YSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGN 159
Cdd:PRK13343 157 IPIGRGQRELIIGDRQTGKTAIAIDAI--INQKDSDvICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGL 234
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 490432852 160 RLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMP 206
Cdd:PRK13343 235 QYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPP 281
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
18-214 |
6.74e-26 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 103.65 E-value: 6.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 18 PIEVPVGKATLGRIMNVLGQPIDM----KGDigeeERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFG 93
Cdd:PRK07721 90 PLEVKVGSGLIGQVLDALGEPLDGsalpKGL----APVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFA 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 94 GAGVGKTVNMMELIRNIAIEhsgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEK 173
Cdd:PRK07721 166 GSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEY 242
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490432852 174 FRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK07721 243 FRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPS 283
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
1-213 |
9.48e-26 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 103.11 E-value: 9.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDigEEERWAIHRA--APSYEELSSSQELLeTGIKVID 78
Cdd:PRK07594 71 TSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGREL--PDVCWKDYDAmpPPAMVRQPITQPLM-TGIRAID 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 79 LMCPFAKGGKVGLFGGAGVGKTVNMMELIrniAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPG 158
Cdd:PRK07594 148 SVATCGEGQRVGIFSAPGVGKSTLLAMLC---NAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPAL 224
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490432852 159 NRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQP 213
Cdd:PRK07594 225 ERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPP 279
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
19-206 |
1.00e-25 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 100.33 E-value: 1.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 19 IEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVG 98
Cdd:cd01132 2 VEVPVGEALLGRVVDALGNPIDGKGPIQTKERRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQTG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 99 KTVNMMELIrniaIEHSG---YSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFR 175
Cdd:cd01132 82 KTAIAIDTI----INQKGkkvYCIYVAIGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFR 157
|
170 180 190
....*....|....*....|....*....|.
gi 490432852 176 DEGRDVLLFVDNIYRYTLAGTEVSALLGRMP 206
Cdd:cd01132 158 DNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 188
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
20-214 |
1.47e-25 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 102.52 E-value: 1.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 20 EVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGK 99
Cdd:PRK06936 96 QVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGK 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 100 TVNMMELIRNIAIEhsgYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGR 179
Cdd:PRK06936 176 STLLASLIRSAEVD---VTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGK 252
|
170 180 190
....*....|....*....|....*....|....*
gi 490432852 180 DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK06936 253 RVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPS 287
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
1-214 |
6.80e-25 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 100.96 E-value: 6.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERwaIHRAAPSYEELSSS--QELLETGIKVID 78
Cdd:PRK05688 83 GSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDW--VPMDGPTINPLNRHpiSEPLDVGIRSIN 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 79 LMCPFAKGGKVGLFGGAGVGKTV--NMMELIRNIAIehsgySVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEP 156
Cdd:PRK05688 161 GLLTVGRGQRLGLFAGTGVGKSVllGMMTRFTEADI-----IVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDA 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 490432852 157 PGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK05688 236 PLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPS 293
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
9-211 |
2.36e-22 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 93.82 E-value: 2.36e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 9 GLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGK 88
Cdd:PRK05922 80 GAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 89 VGLFGGAGVGKTvnmmELIRNIAI-EHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTG 167
Cdd:PRK05922 160 IGVFSEPGSGKS----SLLSTIAKgSKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAA 235
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 490432852 168 LTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:PRK05922 236 MTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHY 279
|
|
| AtpA |
COG0056 |
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ... |
1-206 |
5.05e-22 |
|
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 439826 [Multi-domain] Cd Length: 504 Bit Score: 93.18 E-value: 5.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:COG0056 77 GDYEGIKEGDTVKRTGRILSVPVGEALLGRVVDPLGRPIDGKGPIEAEERRPVERPAPGVIDRQPVHEPLQTGIKAIDAM 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVnmmelirnIAIE------HSG-YSVFAGVGERtregndfyhemtDSNVldkVSLV---- 149
Cdd:COG0056 157 IPIGRGQRELIIGDRQTGKTA--------IAIDtiinqkGKDvICIYVAIGQK------------ASTV---AQVVetle 213
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490432852 150 -YGQM----------NEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNI------YRytlagtEVSALLGRMP 206
Cdd:COG0056 214 eHGAMeytivvaataSDPAPLQYIAPYAGCAMGEYFMDQGKDVLIVYDDLskhavaYR------ELSLLLRRPP 281
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
1-206 |
1.92e-21 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 91.28 E-value: 1.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLM 80
Cdd:PRK09281 77 GDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAM 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 81 CPFAKGGKVGLFGGAGVGKTVnmmelirnIAIE------HSG-YSVFAGVGERtregndfyhEMTDSNVLDKVSlVYGQM 153
Cdd:PRK09281 157 IPIGRGQRELIIGDRQTGKTA--------IAIDtiinqkGKDvICIYVAIGQK---------ASTVAQVVRKLE-EHGAM 218
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490432852 154 ----------NEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNI------YRytlagtEVSALLGRMP 206
Cdd:PRK09281 219 eytivvaataSDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLskqavaYR------QLSLLLRRPP 281
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
18-211 |
6.17e-21 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 88.05 E-value: 6.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 18 PIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIH--------RAAPsyeelsssQELLETGIKVIDLMCPFAKGGKV 89
Cdd:cd01135 1 VLKLPVSEDMLGRIFNGSGKPIDGGPPILPEDYLDINgppinpvaRIYP--------EEMIQTGISAIDVMNTLVRGQKL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 90 GLFGGAGVGKTVNMMELIRNIAIEHSGYS---VFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALT 166
Cdd:cd01135 73 PIFSGSGLPHNELAAQIARQAGVVGSEENfaiVFAAMGVTMEEARFFKDDFEETGALERVVLFLNLANDPTIERIITPRM 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 490432852 167 GLTMAEKFR-DEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:cd01135 153 ALTTAEYLAyEKGKHVLVILTDMTNYAEALREVSAAREEVPGRRGY 198
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
19-206 |
1.03e-20 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 89.27 E-value: 1.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 19 IEVPVGKATLGRIMNVLGQPIDMKGDIGEEERwaIHRAAPSYEELSSSQ--ELLETGIKVIDLMCPFAKGGKVGLFGGAG 96
Cdd:PRK06793 89 VVIPRGNHLLGKVLSANGEVLNEEAENIPLQK--IKLDAPPIHAFEREEitDVFETGIKSIDSMLTIGIGQKIGIFAGSG 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 97 VGKTVNMMELIRNiaiEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 176
Cdd:PRK06793 167 VGKSTLLGMIAKN---AKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243
|
170 180 190
....*....|....*....|....*....|
gi 490432852 177 EGRDVLLFVDNIYRYTLAGTEVSALLGRMP 206
Cdd:PRK06793 244 QGNNVLLMMDSVTRFADARRSVDIAVKELP 273
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
50-211 |
1.33e-20 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 87.24 E-value: 1.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 50 RWAIHRAAPSYEELSSSQELLeTGIKVIDLMCPFAKGGKVGLFGGAGVGKTVnmmelirniaIEH--SGYS-----VFAG 122
Cdd:cd01134 41 RWPVRQPRPVKEKLPPNVPLL-TGQRVLDTLFPVAKGGTAAIPGPFGCGKTV----------ISQslSKWSnsdvvIYVG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 123 VGER----TREGNDFYH---EMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAG 195
Cdd:cd01134 110 CGERgnemAEVLEEFPElkdPITGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVSLMADSTSRWAEAL 189
|
170
....*....|....*.
gi 490432852 196 TEVSALLGRMPSAVGY 211
Cdd:cd01134 190 REISGRLEEMPAEEGY 205
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
20-214 |
4.04e-19 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 84.83 E-value: 4.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 20 EVPVGKATLGRIMNVLGQPIDmkGDIGEEERWAIHRAAPSYEELSSS--QELLETGIKVIDLMCPFAKGGKVGLFGGAGV 97
Cdd:PRK07960 109 QLPLGPALLGRVLDGSGKPLD--GLPAPDTGETGALITPPFNPLQRTpiEHVLDTGVRAINALLTVGRGQRMGLFAGSGV 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 98 GKTVNMMELIRniaIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDE 177
Cdd:PRK07960 187 GKSVLLGMMAR---YTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR 263
|
170 180 190
....*....|....*....|....*....|....*..
gi 490432852 178 GRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPT 214
Cdd:PRK07960 264 GQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPS 300
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
1-211 |
7.14e-18 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 81.03 E-value: 7.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGL-RRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAA--PSYEElsSSQELLETGIKVI 77
Cdd:PRK04196 57 EGTTGLdLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPinPVARE--YPEEFIQTGISAI 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 78 DLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYS---VFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMN 154
Cdd:PRK04196 135 DGLNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENfavVFAAMGITFEEANFFMEDFEETGALERSVVFLNLAD 214
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490432852 155 EPPGNRL---RVAltgLTMAE--KFrDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:PRK04196 215 DPAIERIltpRMA---LTAAEylAF-EKGMHVLVILTDMTNYCEALREISAAREEVPGRRGY 272
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
4-206 |
3.41e-16 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 76.16 E-value: 3.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 4 DGLR--RGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMC 81
Cdd:CHL00059 57 DGLMiqEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 82 PFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEhSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRL 161
Cdd:CHL00059 137 PIGRGQRELIIGDRQTGKTAVATDTILNQKGQ-NVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 490432852 162 RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMP 206
Cdd:CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPP 260
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
16-211 |
4.04e-15 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 73.28 E-value: 4.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 16 EHPIEVPVGKAtlGRIMNVLGQ----------PIDMKGDIGEE----ERWAIHRAAPSYEELSSSqELLETGIKVIDLMC 81
Cdd:PRK04192 146 EHKIMVPPGVS--GTVKEIVSEgdytvddtiaVLEDEDGEGVEltmmQKWPVRRPRPYKEKLPPV-EPLITGQRVIDTFF 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 82 PFAKGGKVGLFGGAGVGKTVnmmeLIRNIAiehsGYS-----VFAGVGERtreGNdfyhEMTDsnVLdkvslvygqmNEP 156
Cdd:PRK04192 223 PVAKGGTAAIPGPFGSGKTV----TQHQLA----KWAdadivIYVGCGER---GN----EMTE--VL----------EEF 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 157 P-------GNRL--R-----------VA------LTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVG 210
Cdd:PRK04192 276 PelidpktGRPLmeRtvliantsnmpVAareasiYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEG 355
|
.
gi 490432852 211 Y 211
Cdd:PRK04192 356 Y 356
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
1-211 |
1.51e-14 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 71.60 E-value: 1.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 1 GSSDGLRRGLEVKDLEHPIEVPVGKATLGRIMNVLGQPIDmKGDIGEEERWAIhrAAPSYEELSSSQ--ELLETGIKVID 78
Cdd:PRK02118 56 GGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPID-GGPELEGEPIEI--GGPSVNPVKRIVprEMIRTGIPMID 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 79 LMCPFAKGGKVGLFGGAgvGKTVNmmELIRNIAIE-HSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPP 157
Cdd:PRK02118 133 VFNTLVESQKIPIFSVS--GEPYN--ALLARIALQaEADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPP 208
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490432852 158 GNRLRVALTGLTMAEKFR-DEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:PRK02118 209 VECLLVPDMALAVAEKFAlEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGY 263
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
19-211 |
1.92e-11 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 62.37 E-value: 1.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 19 IEVPVGKATLGRIMNVLGQPIDMkGDIGEEERW--------AIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVG 90
Cdd:PTZ00185 115 LYIPVGAGVLGKVVNPLGHEVPV-GLLTRSRALleseqtlgKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQREL 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 91 LFGGAGVGKT-------VNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRV 163
Cdd:PTZ00185 194 IVGDRQTGKTsiavstiINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLA 273
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 490432852 164 ALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:PTZ00185 274 PYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAY 321
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
19-211 |
4.36e-10 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 58.58 E-value: 4.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 19 IEVPVGKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVG 98
Cdd:TIGR01040 74 LRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLP 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 99 KTVNMMELIRNIAI-------EHSGYS-----VFAGVGERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALT 166
Cdd:TIGR01040 154 HNEIAAQICRQAGLvklptkdVHDGHEdnfaiVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRL 233
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 490432852 167 GLTMAEKFRDE-GRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:TIGR01040 234 ALTTAEYLAYQcEKHVLVILTDMSSYADALREVSAAREEVPGRRGF 279
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
102-211 |
8.01e-10 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 58.11 E-value: 8.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 102 NMMELIRNIAIEH-------SGYSVFAGVGERTREGNDFYHEM-------TDSNVLDKVSLVYGQMNEPPGNRLRVALTG 167
Cdd:PRK14698 662 NMPTLLHNTVTQHqlakwsdAQVVIYIGCGERGNEMTDVLEEFpklkdpkTGKPLMERTVLIANTSNMPVAAREASIYTG 741
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 490432852 168 LTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGY 211
Cdd:PRK14698 742 ITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 785
|
|
| PRK12608 |
PRK12608 |
transcription termination factor Rho; Provisional |
5-204 |
1.13e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237150 [Multi-domain] Cd Length: 380 Bit Score: 42.38 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 5 GLRRGLEVKDLEHPIEvpvGKATLGRIMNVLGQPidmkgdigeEERWAihrAAPSYEELSS---SQEL-LETG-----IK 75
Cdd:PRK12608 58 NLRTGDVVEGVARPRE---RYRVLVRVDSVNGTD---------PEKLA---RRPHFDDLTPlhpRERLrLETGsddlsMR 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 76 VIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAG-VGERTREGNDFYHEMTdsnvldkvSLVYGQMN 154
Cdd:PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLlIDERPEEVTDMRRSVK--------GEVYASTF 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490432852 155 -EPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGR 204
Cdd:PRK12608 195 dRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGR 245
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
24-137 |
1.17e-04 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 42.32 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 24 GKATLGRIMNVLGQPIDMKGDIGEEERWAIHRAAPSYEELSSSQELLeTGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM 103
Cdd:PRK14698 166 GEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLI-TGQRVIDTFFPQAKGGTAAIPGPFGSGKCVDG 244
|
90 100 110
....*....|....*....|....*....|....*....
gi 490432852 104 MELIRN-----IAIEHSgYSVFAGVGERTREGNDFYHEM 137
Cdd:PRK14698 245 DTLILTkefglIKIKDL-YEILDGKGKKTVEGNEEWTEL 282
|
|
| rho |
TIGR00767 |
transcription termination factor Rho; This RNA helicase, the transcription termination factor ... |
75-207 |
1.73e-04 |
|
transcription termination factor Rho; This RNA helicase, the transcription termination factor Rho, occurs in nearly all bacteria but is missing from the Cyanobacteria, the Mollicutes (Mycoplasmas), and various Lactobacillales including Streptococcus. It is also missing, of course, from the Archaea, which also lack Nus factors. Members of this family from Micrococcus luteus, Mycobacterium tuberculosis, and related species have a related but highly variable long, highly charged insert near the amino end. Members of this family differ in the specificity of RNA binding. [Transcription, Transcription factors]
Pssm-ID: 162030 [Multi-domain] Cd Length: 415 Bit Score: 41.60 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 75 KVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSG-YSVFAGVGERTREgndfyheMTDSNVLDKVSLVYGQM 153
Cdd:TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEvELIVLLIDERPEE-------VTDMQRSVKGEVVASTF 229
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 490432852 154 NEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPS 207
Cdd:TIGR00767 230 DEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLS 283
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
85-205 |
2.84e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.66 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 85 KGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGvgertregndfyhEMTDSNVLDKVSLVYGQMNEPPGNRLRVA 164
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-------------EDILEEVLDQLLLIIVGGKKASGSGELRL 67
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 490432852 165 LTGLTMAEKFRDEgrdvLLFVDNIYRYTLAGTEVSALLGRM 205
Cdd:smart00382 68 RLALALARKLKPD----VLILDEITSLLDAEQEALLLLLEE 104
|
|
| rho_factor_C |
cd01128 |
C-terminal ATP binding domain of transcription termination factor rho; Transcription ... |
75-190 |
6.11e-03 |
|
C-terminal ATP binding domain of transcription termination factor rho; Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal oligonucleotide/oligosaccharide binding fold (OB-fold) domain which binds cysteine-rich nucleotides, and a C-terminal ATP binding domain. This alignment is of the C-terminal ATP binding domain.
Pssm-ID: 410872 [Multi-domain] Cd Length: 249 Bit Score: 36.80 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490432852 75 KVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAG-VGERTREGNDFyHEMTDSNVldkvslVYGQM 153
Cdd:cd01128 5 RVIDLIAPIGKGQRGLIVAPPKAGKTTLLQNIANAIAKNHPEVELIVLlIDERPEEVTDM-RRSVKGEV------VASTF 77
|
90 100 110
....*....|....*....|....*....|....*..
gi 490432852 154 NEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYR 190
Cdd:cd01128 78 DEPPERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 114
|
|
|