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Conserved domains on  [gi|490253248|ref|WP_004151254|]
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MULTISPECIES: type VI secretion system-associated protein TagO [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VasI super family cl11879
Type VI secretion system VasI, EvfG, VC_A0118; VasI is a family of Gram-negative proteins that ...
 65-165 8.29e-06

Type VI secretion system VasI, EvfG, VC_A0118; VasI is a family of Gram-negative proteins that form part of the pathogenicity apparatus for bacteria-to-bacteria attack. The exact function of this component is not known.


The actual alignment was detected with superfamily member pfam11319:

Pssm-ID: 448354  Cd Length: 182  Bit Score: 43.94  E-value: 8.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253248   65 VLRCREGKTEAYLSVDEYMGidDPLITIRFDGGKPQKRRWSAAEGG---EAAFSPKAISFIKDISSHKKMILGFEPyGST 141
Cdd:pfam11319  83 MLSCIDNITRLQIALPKPQK--SSRVTVTLGDKTALKQPWFVRENGyvlESGRGLPAIEEIKRLMGAQRLTLRSDN-GAP 159

                          90       100
                  ....*....|....*....|....
gi 490253248  142 MQVVeFDLTGADSIAKEISSSCKW 165
Cdd:pfam11319 160 DGLT-FDLSGLSEAIKPLRKACRW 182
 
Name Accession Description Interval E-value
VasI pfam11319
Type VI secretion system VasI, EvfG, VC_A0118; VasI is a family of Gram-negative proteins that ...
 65-165 8.29e-06

Type VI secretion system VasI, EvfG, VC_A0118; VasI is a family of Gram-negative proteins that form part of the pathogenicity apparatus for bacteria-to-bacteria attack. The exact function of this component is not known.


Pssm-ID: 431810  Cd Length: 182  Bit Score: 43.94  E-value: 8.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253248   65 VLRCREGKTEAYLSVDEYMGidDPLITIRFDGGKPQKRRWSAAEGG---EAAFSPKAISFIKDISSHKKMILGFEPyGST 141
Cdd:pfam11319  83 MLSCIDNITRLQIALPKPQK--SSRVTVTLGDKTALKQPWFVRENGyvlESGRGLPAIEEIKRLMGAQRLTLRSDN-GAP 159

                          90       100
                  ....*....|....*....|....
gi 490253248  142 MQVVeFDLTGADSIAKEISSSCKW 165
Cdd:pfam11319 160 DGLT-FDLSGLSEAIKPLRKACRW 182
 
Name Accession Description Interval E-value
VasI pfam11319
Type VI secretion system VasI, EvfG, VC_A0118; VasI is a family of Gram-negative proteins that ...
 65-165 8.29e-06

Type VI secretion system VasI, EvfG, VC_A0118; VasI is a family of Gram-negative proteins that form part of the pathogenicity apparatus for bacteria-to-bacteria attack. The exact function of this component is not known.


Pssm-ID: 431810  Cd Length: 182  Bit Score: 43.94  E-value: 8.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490253248   65 VLRCREGKTEAYLSVDEYMGidDPLITIRFDGGKPQKRRWSAAEGG---EAAFSPKAISFIKDISSHKKMILGFEPyGST 141
Cdd:pfam11319  83 MLSCIDNITRLQIALPKPQK--SSRVTVTLGDKTALKQPWFVRENGyvlESGRGLPAIEEIKRLMGAQRLTLRSDN-GAP 159

                          90       100
                  ....*....|....*....|....
gi 490253248  142 MQVVeFDLTGADSIAKEISSSCKW 165
Cdd:pfam11319 160 DGLT-FDLSGLSEAIKPLRKACRW 182
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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