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Conserved domains on  [gi|489779967|ref|WP_003683858|]
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acyl carrier protein [Limosilactobacillus fermentum]

Protein Classification

acyl carrier protein( domain architecture ID 10011594)

acyl carrier protein functions as the carrier of the growing fatty acid chain in fatty acid biosynthesis

Gene Ontology:  GO:0009245|GO:0000036|GO:0000035
PubMed:  20662770

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
acpP PRK00982
acyl carrier protein; Provisional
 3-80 2.16e-23

acyl carrier protein; Provisional


:

Pssm-ID: 179197 [Multi-domain]  Cd Length: 78  Bit Score: 84.07  E-value: 2.16e-23
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489779967  3 KKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQK 80
Cdd:PRK00982  1 MSEIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQK 78
 
Name Accession Description Interval E-value
acpP PRK00982
acyl carrier protein; Provisional
 3-80 2.16e-23

acyl carrier protein; Provisional


Pssm-ID: 179197 [Multi-domain]  Cd Length: 78  Bit Score: 84.07  E-value: 2.16e-23
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489779967  3 KKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQK 80
Cdd:PRK00982  1 MSEIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQK 78
AcpP COG0236
Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the ...
 1-80 3.69e-18

Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440006 [Multi-domain]  Cd Length: 80  Bit Score: 71.04  E-value: 3.69e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489779967  1 MDKKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQK 80
Cdd:COG0236   1 MPREELEERLAEIIAEVLGVDPEEITPDDSFFEDLGLDSLDAVELIAALEEEFGIELPDTELFEYPTVADLADYLEEKLA 80
acyl_carrier TIGR00517
acyl carrier protein; This small protein has phosphopantetheine covalently bound to a Ser ...
 3-79 3.17e-15

acyl carrier protein; This small protein has phosphopantetheine covalently bound to a Ser residue. It acts as a carrier of the growing fatty acid chain, which is bound to the prosthetic group, during fatty acid biosynthesis. Homologous phosphopantetheine-binding domains are found in longer proteins. Acyl carrier proteins scoring above the noise cutoff but below the trusted cutoff may be specialized versions. These include those involved in mycolic acid biosynthesis in the Mycobacteria, lipid A biosynthesis in Rhizobium, actinorhodin polyketide synthesis in Streptomyces coelicolor, etc. This protein is not found in the Archaea.Gene name acpP.S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 213536 [Multi-domain]  Cd Length: 77  Bit Score: 63.57  E-value: 3.17e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489779967   3 KKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQ 79
Cdd:TIGR00517  1 MQEIFEKVKAIIKEQLNVDEDQITTDARFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVNYIEENQ 77
PP-binding pfam00550
Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached ...
 8-70 4.07e-05

Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.


Pssm-ID: 425746 [Multi-domain]  Cd Length: 62  Bit Score: 37.54  E-value: 4.07e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489779967   8 DTVSSIVADHFDVDRAKITDDLNLkTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGE 70
Cdd:pfam00550  1 ERLRELLAEVLGVPAEEIDPDTDL-FDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTLAE 62
 
Name Accession Description Interval E-value
acpP PRK00982
acyl carrier protein; Provisional
 3-80 2.16e-23

acyl carrier protein; Provisional


Pssm-ID: 179197 [Multi-domain]  Cd Length: 78  Bit Score: 84.07  E-value: 2.16e-23
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489779967  3 KKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQK 80
Cdd:PRK00982  1 MSEIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQK 78
AcpP COG0236
Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the ...
 1-80 3.69e-18

Acyl carrier protein [Lipid transport and metabolism]; Acyl carrier protein is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440006 [Multi-domain]  Cd Length: 80  Bit Score: 71.04  E-value: 3.69e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489779967  1 MDKKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQK 80
Cdd:COG0236   1 MPREELEERLAEIIAEVLGVDPEEITPDDSFFEDLGLDSLDAVELIAALEEEFGIELPDTELFEYPTVADLADYLEEKLA 80
acpP CHL00124
acyl carrier protein; Validated
 1-78 1.01e-15

acyl carrier protein; Validated


Pssm-ID: 177047 [Multi-domain]  Cd Length: 82  Bit Score: 65.04  E-value: 1.01e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489779967  1 MDKKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAH 78
Cdd:CHL00124  1 MTKNDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQK 78
acyl_carrier TIGR00517
acyl carrier protein; This small protein has phosphopantetheine covalently bound to a Ser ...
 3-79 3.17e-15

acyl carrier protein; This small protein has phosphopantetheine covalently bound to a Ser residue. It acts as a carrier of the growing fatty acid chain, which is bound to the prosthetic group, during fatty acid biosynthesis. Homologous phosphopantetheine-binding domains are found in longer proteins. Acyl carrier proteins scoring above the noise cutoff but below the trusted cutoff may be specialized versions. These include those involved in mycolic acid biosynthesis in the Mycobacteria, lipid A biosynthesis in Rhizobium, actinorhodin polyketide synthesis in Streptomyces coelicolor, etc. This protein is not found in the Archaea.Gene name acpP.S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 213536 [Multi-domain]  Cd Length: 77  Bit Score: 63.57  E-value: 3.17e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489779967   3 KKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQ 79
Cdd:TIGR00517  1 MQEIFEKVKAIIKEQLNVDEDQITTDARFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVNYIEENQ 77
PTZ00171 PTZ00171
acyl carrier protein; Provisional
 2-76 1.39e-14

acyl carrier protein; Provisional


Pssm-ID: 240304  Cd Length: 148  Bit Score: 63.95  E-value: 1.39e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489779967   2 DKKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIA 76
Cdd:PTZ00171  67 SKEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIE 141
PRK12449 PRK12449
acyl carrier protein; Provisional
 1-78 1.28e-11

acyl carrier protein; Provisional


Pssm-ID: 183533 [Multi-domain]  Cd Length: 80  Bit Score: 54.71  E-value: 1.28e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489779967  1 MDKKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAH 78
Cdd:PRK12449  1 MTREEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQR 78
PRK05350 PRK05350
acyl carrier protein; Provisional
 1-81 4.51e-08

acyl carrier protein; Provisional


Pssm-ID: 180033  Cd Length: 82  Bit Score: 45.37  E-value: 4.51e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489779967  1 MDKKEIFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAAHQK 80
Cdd:PRK05350  2 MTREEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLLK 81


                .
gi 489779967 81 D 81
Cdd:PRK05350 82 E 82
PP-binding pfam00550
Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached ...
 8-70 4.07e-05

Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.


Pssm-ID: 425746 [Multi-domain]  Cd Length: 62  Bit Score: 37.54  E-value: 4.07e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489779967   8 DTVSSIVADHFDVDRAKITDDLNLkTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGE 70
Cdd:pfam00550  1 ERLRELLAEVLGVPAEEIDPDTDL-FDLGLDSLLAVELIARLEEEFGVEIPPSDLFEHPTLAE 62
PRK05883 PRK05883
acyl carrier protein; Validated
 6-77 2.41e-03

acyl carrier protein; Validated


Pssm-ID: 180304  Cd Length: 91  Bit Score: 33.66  E-value: 2.41e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489779967  6 IFDTVSSIVADHFDVDRAKITDDLNLKTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAA 77
Cdd:PRK05883 15 VSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAA 86
PRK07117 PRK07117
acyl carrier protein; Validated
 1-77 3.42e-03

acyl carrier protein; Validated


Pssm-ID: 180851 [Multi-domain]  Cd Length: 79  Bit Score: 32.76  E-value: 3.42e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489779967  1 MDKKEIFDTVSSI---VADHFDVDRAKITDDLnlkTDLNADSIDFVEFVLEVEDTFGAEIEDSEAEKLSTIGEVVDYIAA 77
Cdd:PRK07117  1 MDKQRIFDILVRHireVLPDLDQHQFQPEDSL---VDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYA 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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