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Conserved domains on  [gi|489495746|ref|WP_003400663|]
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MULTISPECIES: NADH-quinone oxidoreductase subunit C [Mycobacterium]

Protein Classification

HycE2 family protein( domain architecture ID 11461653)

HycE2 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
28-492 3.37e-144

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


:

Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 422.07  E-value: 3.37e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  28 FRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY-----VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPR 102
Cdd:COG3261    2 ALAALALLLALDLAAGGALFGLRLEAEDELLLLLllaagVLLLLPTPPPSSSAPAAAAARRERARERLGGEEGGGPPRRR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 103 RLVRHAHWPDWHPMRTDAGPAPEFTDTGAF-PFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 181
Cdd:COG3261   82 LLLPDGWPPLPPPPLRPPPPPRGPPPPPPEePEMKVEGEGVHEIPVGPVHAGLIEPGHFRFSVEGERILDLEIRLGYVHR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 182 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSL 261
Cdd:COG3261  162 GIEKLAEGRDYEQALYLAERICGICSVAHALAYCQAVEKAAGIEVPPRAQYLRVILLELERIHSHLLDLGALANDVGFET 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 262 ANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDT-----DELAALAVDLAEVATLTLANSVVYDRFAGTAVL 336
Cdd:COG3261  242 LFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPEQlkailERLDELEEEVKELVDLFLNDPSVLDRLVGTGVL 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 337 HPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES-HTGPIey 412
Cdd:COG3261  322 SKEDARDLGAVGPVARASGVDRDVRRDHPYAAydeLDFKVVTETEGDVYARALVRLEEIFESLDLIRQALEKlPEGPI-- 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 413 AATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492
Cdd:COG3261  400 RVPVPGLPPDGEGLGRVEAPRGELVHYVRTDGDGRLERVKIRTPSFANWPALELALRGNIVADFPLINKSFDPCYSCTDR 479
 
Name Accession Description Interval E-value
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
28-492 3.37e-144

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 422.07  E-value: 3.37e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  28 FRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY-----VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPR 102
Cdd:COG3261    2 ALAALALLLALDLAAGGALFGLRLEAEDELLLLLllaagVLLLLPTPPPSSSAPAAAAARRERARERLGGEEGGGPPRRR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 103 RLVRHAHWPDWHPMRTDAGPAPEFTDTGAF-PFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 181
Cdd:COG3261   82 LLLPDGWPPLPPPPLRPPPPPRGPPPPPPEePEMKVEGEGVHEIPVGPVHAGLIEPGHFRFSVEGERILDLEIRLGYVHR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 182 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSL 261
Cdd:COG3261  162 GIEKLAEGRDYEQALYLAERICGICSVAHALAYCQAVEKAAGIEVPPRAQYLRVILLELERIHSHLLDLGALANDVGFET 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 262 ANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDT-----DELAALAVDLAEVATLTLANSVVYDRFAGTAVL 336
Cdd:COG3261  242 LFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPEQlkailERLDELEEEVKELVDLFLNDPSVLDRLVGTGVL 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 337 HPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES-HTGPIey 412
Cdd:COG3261  322 SKEDARDLGAVGPVARASGVDRDVRRDHPYAAydeLDFKVVTETEGDVYARALVRLEEIFESLDLIRQALEKlPEGPI-- 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 413 AATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492
Cdd:COG3261  400 RVPVPGLPPDGEGLGRVEAPRGELVHYVRTDGDGRLERVKIRTPSFANWPALELALRGNIVADFPLINKSFDPCYSCTDR 479
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
143-484 8.67e-33

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 128.74  E-value: 8.67e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 143 YEIPVGPVHAGliEPGHFRF--SVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIED 220
Cdd:PRK06075   7 YTLNFGPQHPA--AHGVLRLilELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEK 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 221 ALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAlRAL 300
Cdd:PRK06075  85 LLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVR-RDL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 301 PDT------DELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEI 374
Cdd:PRK06075 164 PDGlledirDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDF 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 375 GAP---DGDVLARYTVRRDEFAASAALAQHIVE---SHTGPIeyAATLHPVGAPSSG-IG------------IVEGWR-- 433
Cdd:PRK06075 244 DVPvgkNGDCYDRYLVRVEEMRQSLRIIEQCLDrlrPPPGPV--MVDDPKIAPPARLeMKtsmealihhfklVTEGFRvp 321

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489495746 434 -GTIVHRVE---------IDVDG--RITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFN 484
Cdd:PRK06075 322 aGEVYAAVEspkgefgvyLVSDGgnKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLD 384
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
10-119 3.98e-15

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 71.74  E-value: 3.98e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746   10 RVSERGLIATAEQLWADSFR---LALVAAHD--DGDSLRVVYLFLAGYPDRRVELEyVVPADNPEIRSLAYLsFP-AGRF 83
Cdd:pfam00329   2 TVDPEDLLEVARFLRDDELGfdhLSDLTGVDypEEGRFEVVYHLLSITHNVRVRVK-VPLEDDPVVPSVTDI-WPgANWY 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 489495746   84 EREMADLYGIRPVGHPKPRRLVRHAHWPDwHPMRTD 119
Cdd:pfam00329  80 EREVYDMFGIVFEGHPDLRRILLPEDWEG-HPLRKD 114
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 16-119 1.14e-06

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 47.61  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746   16 LIATAEQLWADSFR---LALVAAHD--DGDSLRVVYLFLAGYPDRRVELEYVVPADNPeIRSLAYLSFPAGRFEREMADL 90
Cdd:TIGR01961  10 LLEVLTFLKDPALGfelLTDVSGVDypKEKRFEVVYHLLSIKKNRRIRLKVRLSEDDP-VPSLTSVFPTANWYERETYDM 88

                          90       100       110
                  ....*....|....*....|....*....|.
gi 489495746   91 YGIRPVGHPKPRRLVRhahWPDW--HPMRTD 119
Cdd:TIGR01961  89 YGIVFDGHPDLRRILM---PDDFegHPLRKD 116
 
Name Accession Description Interval E-value
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
28-492 3.37e-144

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 422.07  E-value: 3.37e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  28 FRLALVAAHDDGDSLRVVYLFLAGYPDRRVELEY-----VVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPR 102
Cdd:COG3261    2 ALAALALLLALDLAAGGALFGLRLEAEDELLLLLllaagVLLLLPTPPPSSSAPAAAAARRERARERLGGEEGGGPPRRR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 103 RLVRHAHWPDWHPMRTDAGPAPEFTDTGAF-PFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHR 181
Cdd:COG3261   82 LLLPDGWPPLPPPPLRPPPPPRGPPPPPPEePEMKVEGEGVHEIPVGPVHAGLIEPGHFRFSVEGERILDLEIRLGYVHR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 182 GIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSL 261
Cdd:COG3261  162 GIEKLAEGRDYEQALYLAERICGICSVAHALAYCQAVEKAAGIEVPPRAQYLRVILLELERIHSHLLDLGALANDVGFET 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 262 ANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDT-----DELAALAVDLAEVATLTLANSVVYDRFAGTAVL 336
Cdd:COG3261  242 LFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPEQlkailERLDELEEEVKELVDLFLNDPSVLDRLVGTGVL 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 337 HPDDASALGCLGYVARASGLRSDARVEHPTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES-HTGPIey 412
Cdd:COG3261  322 SKEDARDLGAVGPVARASGVDRDVRRDHPYAAydeLDFKVVTETEGDVYARALVRLEEIFESLDLIRQALEKlPEGPI-- 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 413 AATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQSYAGNDL 492
Cdd:COG3261  400 RVPVPGLPPDGEGLGRVEAPRGELVHYVRTDGDGRLERVKIRTPSFANWPALELALRGNIVADFPLINKSFDPCYSCTDR 479
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
3-491 4.77e-69

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 229.45  E-value: 4.77e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746   3 SASWLRHRVSERGLIATAEQLWAD-SFRLALVAAHDD---GDSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSF 78
Cdd:COG3262   22 RPNEVWVEVDREDLPELAEFLAEGgGGRLAALWGNDErelGGGFAVYYVFALEGEGALVTLKVSVPKDDPVFPSITDLFP 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  79 PAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPAPE-FTDTGAFPFLAVEGPGVYEIPVGPVHAGLIE 156
Cdd:COG3262  102 AASWYEREIRDLFGIVPEGHPDPRRLVLHDDWPeGIYPLRKDFKGGPRpAPAPAEEYFRPVEGEGIEVVVVGPVHAGIIE 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 157 PGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRAL 236
Cdd:COG3262  182 PGHFFFSVGGEIVIRLEELLYYVHKGEEKLEEGEEGRAGLVLAEAAGGDSGAAAAAAAAAAAEAAAAAAIPPRAALLRLL 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 237 IVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGV-----ALRALPDTDELAALAV 311
Cdd:COG3262  262 RLLLERLELHLGLLGLGGLDAGGAGAAGAAALLRRRLERLLEALLLRRGRRGGGGGGGGgrdddDLLADLILELLLDLEE 341

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 312 DLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPT---IVLPITEIGAPDGDVLARyTVR 388
Cdd:COG3262  342 EEEELEELADLLSRLIDRLDTTGGLALKAAAAGGVGGAAGRASGGRGDRRRRAPYaayDDVDLRVVVLTVGDVDVR-RAR 420

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 389 RDEFAASAALAQHIVESHTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAM 468
Cdd:COG3262  421 VREELEEISRLIIILLDLLLLGPGGLLVGGEPAPAEGGGGGGGLRGGGGEGVRGGGGDAIRRRRWRRPSAANWPNPPALI 500

                        490       500
                 ....*....|....*....|...
gi 489495746 469 ADTIVPDFPLANKSFNQSYAGND 491
Cdd:COG3262  501 LPNINDDFPLNNSINSLSYGSSD 523
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
143-484 8.67e-33

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 128.74  E-value: 8.67e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 143 YEIPVGPVHAGliEPGHFRF--SVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIED 220
Cdd:PRK06075   7 YTLNFGPQHPA--AHGVLRLilELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEK 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 221 ALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAlRAL 300
Cdd:PRK06075  85 LLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVR-RDL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 301 PDT------DELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEI 374
Cdd:PRK06075 164 PDGlledirDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDF 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 375 GAP---DGDVLARYTVRRDEFAASAALAQHIVE---SHTGPIeyAATLHPVGAPSSG-IG------------IVEGWR-- 433
Cdd:PRK06075 244 DVPvgkNGDCYDRYLVRVEEMRQSLRIIEQCLDrlrPPPGPV--MVDDPKIAPPARLeMKtsmealihhfklVTEGFRvp 321

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489495746 434 -GTIVHRVE---------IDVDG--RITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFN 484
Cdd:PRK06075 322 aGEVYAAVEspkgefgvyLVSDGgnKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLD 384
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 143-477 4.37e-32

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 126.72  E-value: 4.37e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 143 YEIPVGPVHAGLiePGHFRFSVA--GETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI---SGDTsaaHALAHSLA 217
Cdd:COG0649    7 MVLNMGPQHPST--HGVLRLVLEldGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLdylSPMN---NELAYVLA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 218 IEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVAl 297
Cdd:COG0649   82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVR- 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 298 RALPD-TDELAALAVD-----LAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIV--- 368
Cdd:COG0649  161 RDLPDgFLEKVREFLDyfpkrLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGyde 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 369 ----LPIteigAPDGDVLARYTVRRDEFAASAalaqHIVES-----HTGPIeyAATLHPVGAPSSGI------------- 426
Cdd:COG0649  241 ldfdVPV----GTEGDCYDRYLVRMEEMRQSL----RIIRQcldklPEGPV--MAKDPKIAPPPKEEmktsmealihhfk 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489495746 427 GIVEGWR---GTIVHRVE---------IDVDGRIT--RAKVVDPSWFNWPALPVAMADTIVPDFP 477
Cdd:COG0649  311 LVTEGFKvpaGEVYAAVEsprgelgfyLVSDGGTKpyRVKIRSPSFANLQALPEMLKGHMLADVV 375
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
44-404 2.91e-26

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 112.95  E-value: 2.91e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  44 VVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHahwPDW--HPMRTD-- 119
Cdd:PRK13292 295 VNYHLLSFDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMP---PDWegHPLRKEhp 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 120 --AGPAPEFTDTGAFPFLAVEGPGVYE--------IPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHG 189
Cdd:PRK13292 372 frATEMPPYTRDDARRLQPLPAGDFFDrvdeetliLNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGER 451

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 190 RPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRI 269
Cdd:PRK13292 452 QHWNQFIPYTDRIDYLAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTD 531

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 270 RENLLRRNAAVTGHRLLRGAIRAGGVAlRALPDTDELAALAV------DLAEVATLTLANSVVYDRFAGTAVLHPDDASA 343
Cdd:PRK13292 532 REKIFDIVEMITGGRMHPAWFRIGGVA-EDLPEGWKEAVEAFlrwfpgRLKEYEDLLTGNPIFKARLKGVGVITRDEAVE 610

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489495746 344 LGCLGYVARASGLRSDARVEHPTIVLPITEIGAP---DGDVLARYTVRRDEFAASAalaqHIVE 404
Cdd:PRK13292 611 WGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVPtaeGGDCYARYLVRMEEMRQSL----RIVR 670
PRK12322 PRK12322
NADH-quinone oxidoreductase subunit D;
147-465 1.69e-21

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 183437 [Multi-domain]  Cd Length: 366  Bit Score: 95.93  E-value: 1.69e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 147 VGPVHAGliEPGHFR--FSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGI 224
Cdd:PRK12322  11 VGPQHPS--THGVFRlvLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMMGL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 225 ELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRA----L 300
Cdd:PRK12322  89 EVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDApdgwI 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 301 PDTDE-LAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIGAP-- 377
Cdd:PRK12322 169 EKVKEfVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIPvg 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 378 -DGDVLARYTVRRDEFAASAALAQHIVES--HTGPIeyAATLHPVGAPSSG--IGIVEGWRGTIVHRVEIDVDGRITRAK 452
Cdd:PRK12322 249 sVGDCWDRYVCRMQEIEQSLKIIEQAVEQfpKEGPV--LAKVPKIIKAPKGeaYVRIESPRGEIGCYIASDGKKKPYRLK 326

                        330
                 ....*....|...
gi 489495746 453 VVDPSWFNWPALP 465
Cdd:PRK12322 327 FRRPSFYNLQILP 339
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
10-119 3.98e-15

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 71.74  E-value: 3.98e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746   10 RVSERGLIATAEQLWADSFR---LALVAAHD--DGDSLRVVYLFLAGYPDRRVELEyVVPADNPEIRSLAYLsFP-AGRF 83
Cdd:pfam00329   2 TVDPEDLLEVARFLRDDELGfdhLSDLTGVDypEEGRFEVVYHLLSITHNVRVRVK-VPLEDDPVVPSVTDI-WPgANWY 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 489495746   84 EREMADLYGIRPVGHPKPRRLVRHAHWPDwHPMRTD 119
Cdd:pfam00329  80 EREVYDMFGIVFEGHPDLRRILLPEDWEG-HPLRKD 114
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
268-391 5.66e-13

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 68.95  E-value: 5.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  268 RIRENLLRRNAAVTGHRLLRGAIRAGGVAlRALPD--TDELAALAVD----LAEVATLTLANSVVYDRFAGTAVLHPDDA 341
Cdd:pfam00346  12 REREKILDLFERITGARMTHSYFRPGGVA-RDLPEgfLEKIREFLDYfpkrLDEYEDLLTRNRIFKDRTKGVGVLSAEDA 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 489495746  342 SALGCLGYVARASGLRSDARVEHP---------TIVLpiteigAPDGDVLARYTVRRDE 391
Cdd:pfam00346  91 LALGVTGPMLRASGVPWDLRKDEPysgydeldfDVPV------GTEGDCYDRYLVRMEE 143
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 37-119 1.03e-11

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 62.93  E-value: 1.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  37 DDGDSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLsFP-AGRFEREMADLYGIRPVGHPKPRRLVRhahWPDW-- 113
Cdd:COG0852   64 ERGDRFEVVYHLLSLTHNRRLRLKVFVPRDDPVVPSVTDV-WPgANWHEREAYDMFGIVFEGHPDLRRILL---PEDWeg 139


                 ....*.
gi 489495746 114 HPMRTD 119
Cdd:COG0852  140 HPLRKD 145
PRK07415 PRK07415
NAD(P)H-quinone oxidoreductase subunit H; Validated
 145-395 3.23e-10

NAD(P)H-quinone oxidoreductase subunit H; Validated


Pssm-ID: 180969 [Multi-domain]  Cd Length: 394  Bit Score: 61.68  E-value: 3.23e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 145 IPVGPVHAGLiePGHFRFSVA--GETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDAL 222
Cdd:PRK07415  13 LNFGPHHPSM--HGVLRLIVTldGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLA 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 223 GIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGA-IRAGGVALRaLP 301
Cdd:PRK07415  91 NIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLINNNyFRIGGVAAD-LP 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 302 --------DTDELAALAVDlaEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR-VEHPTIV--LP 370
Cdd:PRK07415 170 ygwlekclDFCDYFGPKID--EYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRkVDHYECYddFD 247

                        250       260
                 ....*....|....*....|....*
gi 489495746 371 ITEIGAPDGDVLARYTVRRDEFAAS 395
Cdd:PRK07415 248 WDVAWETEGDCLARYRVRIEEMRES 272
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 44-365 3.64e-09

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 59.17  E-value: 3.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  44 VVYLFLAGYPDRRVELEYVVPADNPEIRSLAYLsFP-AGRFEREMADLYGIRPVGHPKPRRLVRHAHWpDWHPMRTDAgP 122
Cdd:PRK11742  74 VFYHLISIERNRDIMLKVALSENDLHVPTITKI-FPnANWYERETWDMFGITFDGHPHLRRILMPPTW-EGHPLRKDY-P 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 123 A-----PEFTDTGAFPFLAVEG----PGVYEIP------------VGPVHaglieP---GHFRFSVA--GETIVRLKARL 176
Cdd:PRK11742 151 AratefDPFELTKAKQDLEMEAlrfkPEEWGMKrgtdnedfmflnLGPNH-----PsahGAFRIVLQldGEEIVDCVPDI 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 177 WFVHRGIEKL-----FHGR-PATAAVD------------LAerisgdtsaahalahslaIEDALGIELPHEVHRLRALIV 238
Cdd:PRK11742 226 GYHHRGAEKMgerqsWHSYiPYTDRIDylggcmnempyvLA------------------VEKLAGITVPDRVNVIRVMLS 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 239 ELERLYNHAADLGALANDVG------YSLANahaqriRENLLRRNAAVTGHRLLRGAIRAGGVAlRALPD------TDEL 306
Cdd:PRK11742 288 ELFRINSHLLYIGTFIQDVGamtpvfFAFTD------RQKIYDVIEAITGFRMHPAWFRIGGVA-HDLPRgwdrllREFL 360

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489495746 307 AALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHP 365
Cdd:PRK11742 361 DWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARP 419
ndhH CHL00017
NADH dehydrogenase subunit 7
 145-411 2.34e-07

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 52.78  E-value: 2.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 145 IPVGPVHAGLiePGHFRFSVA--GETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDAL 222
Cdd:CHL00017  13 VNMGPHHPSM--HGVLRLIVTldGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEQLG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 223 GIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRaLPD 302
Cdd:CHL00017  91 NIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAAD-LPY 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 303 ------TDELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDAR-VEHPTIVLPIT-EI 374
Cdd:CHL00017 170 gwidkcLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRkVDHYECYDEFDwEV 249

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 489495746 375 G-APDGDVLARYTVRRDEFAASAALAQHIVESHT-GPIE 411
Cdd:CHL00017 250 QwQKEGDSLARYLVRIGEMTESIKIIQQALEGIPgGPYE 288
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
16-119 3.21e-07

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 50.34  E-value: 3.21e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  16 LIATAEQLWADSFR-LALVAAHDDGDSLRVV--YLFLAGYPD----RRVELEYVVPADNPEIRSLAYLSFPAGRFEREMA 88
Cdd:PRK12494  50 LLPIATALYAYGFNyLQCQGGYDEGPGKELVsfYHLIKVSDNadkpREVRLKVFLPRDDPRVPSVYWIWKGADWQERETY 129

                         90       100       110
                 ....*....|....*....|....*....|.
gi 489495746  89 DLYGIRPVGHPKPRRLVRHAHWPDWhPMRTD 119
Cdd:PRK12494 130 DMYGINFEGHPNLKRILMPEDWVGW-PLRKD 159
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 16-119 1.14e-06

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 47.61  E-value: 1.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746   16 LIATAEQLWADSFR---LALVAAHD--DGDSLRVVYLFLAGYPDRRVELEYVVPADNPeIRSLAYLSFPAGRFEREMADL 90
Cdd:TIGR01961  10 LLEVLTFLKDPALGfelLTDVSGVDypKEKRFEVVYHLLSIKKNRRIRLKVRLSEDDP-VPSLTSVFPTANWYERETYDM 88

                          90       100       110
                  ....*....|....*....|....*....|.
gi 489495746   91 YGIRPVGHPKPRRLVRhahWPDW--HPMRTD 119
Cdd:TIGR01961  89 YGIVFDGHPDLRRILM---PDDFegHPLRKD 116
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
45-122 6.76e-05

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 45.36  E-value: 6.76e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489495746  45 VYLFLAGYPDRR-VELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDwHPMRTDAGP 122
Cdd:PRK07735 348 VYVHLYSYGKRQsVAVKVKLDREAPQVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVG-HPLRKDYEP 425
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 36-119 1.01e-04

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 43.83  E-value: 1.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  36 HDDGDSLRVVYLFLAGYPDRRVELEYVVPADNPEIRSLaYLSFPAGRF-EREMADLYGIRPVGHPKPRRLVRHAHWPDwH 114
Cdd:PRK07785 128 HDTGRELHAVYHLTSITHNRRIRLEVAVPDADPHIPSL-VSVYPTNDWhERETYDFFGIVFDGHPALTRIEMPDDWVG-H 205


                 ....*
gi 489495746 115 PMRTD 119
Cdd:PRK07785 206 PQRKD 210
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
44-117 2.21e-04

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 43.12  E-value: 2.21e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489495746  44 VVYLFLAGYPDRRVELEYVVPaDNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDwHPMR 117
Cdd:PRK08491 100 VFYQLLSMSKRKRVRVKCFLK-EKEALQSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVG-HPLL 171
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 44-119 1.93e-03

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 39.51  E-value: 1.93e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489495746  44 VVYLFLAGYPDRRVELEYVVPaDNPEIRSLAYLsFP-AGRFEREMADLYGIRPVGHPKPRRLVRHAHWpDWHPMRTD 119
Cdd:PRK06074  73 VVYHLLSYKHNVRLRVKVRAP-EDPVVPSVVDI-WPsANWYEREAYDLYGIVFEGHPDLRRILTDYGF-EGHPLRKD 146
ndhJ CHL00012
NADH dehydrogenase subunit J
 63-119 3.34e-03

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 38.14  E-value: 3.34e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489495746  63 VPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWhPMRTD 119
Cdd:CHL00012  90 VPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGW-PLRKD 145
FrhA COG3259
Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion];
181-460 4.21e-03

Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion];


Pssm-ID: 442490  Cd Length: 458  Bit Score: 39.37  E-value: 4.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 181 RGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALAN-D-VG 258
Cdd:COG3259   40 RGFEKFLEGRPYEEVPDITARICGICPVAHHLASAKALEAAFGVEPPPTARKLRRLLYCGEWIQSHALHFFFLAApDfLG 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 259 YS----LANAHAQRIRENLLRRNAAVTGHRLLRG------AIRAGGVAlrALPDTDELAALAVDLAEVatLTLANSVVyd 328
Cdd:COG3259  120 YRnvlgLAKKHPELVKRGLRLRKLGNEIIELLGGraihpvNAVPGGFS--KAPSEEERDELLERLEEA--LEFAEEAV-- 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 329 RFAGTAVLHPDDASALGCL--GYVarasGLRSDARVEHPTIVLPITeigAPDGDV------------------------- 381
Cdd:COG3259  194 DLFKDLFLKNKDEVDFPDFdtEFM----GLVDDGEYPLYDGRLRIV---DSDGKIlefdpadyldhiaeevvpwsyakfp 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746 382 ---------------LARYTV--RRDEFAASAALAQHIveSHTGP-------------IE--YAA--------------- 414
Cdd:COG3259  267 ylkglgydgiyrvgpLARLNLndDILTPLAQEALEEFG--LRFGPpvhnpfayhwarlIEilYAAeraielledpeitgp 344

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 489495746 415 -TLHPVGA-PSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFN 460
Cdd:COG3259  345 pLRVPVGPrAGEGVGVVEAPRGTLIHHYTVDEDGLITKANLIVPTTQN 392
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 79-479 7.93e-03

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 39.09  E-value: 7.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746   79 PAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDWHPMRTDAGPAPEFTDTGAfPFLAVEGPGVYEIPVGPVHAGLIEPG 158
Cdd:COG3321   864 PTYPFQREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAA-AALALAAAALAALLALVALAAAAAAL 942

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  159 HFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIV 238
Cdd:COG3321   943 LALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAALL 1022

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  239 ELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAVDLAEVAT 318
Cdd:COG3321  1023 ALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAAL 1102

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  319 LTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEIGAPDGDVLARYTVRRDEFAASAAL 398
Cdd:COG3321  1103 AAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALA 1182

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489495746  399 AQHIVESHTGPIEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPL 478
Cdd:COG3321  1183 AALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAAL 1262


                  .
gi 489495746  479 A 479
Cdd:COG3321  1263 A 1263
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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