NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489487052|ref|WP_003392018|]
View 

MULTISPECIES: 50S ribosomal protein L33 [Bacillales]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 4.23e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440037  Cd Length: 52  Bit Score: 73.65  E-value: 4.23e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 489487052  1 MRVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 4.23e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 73.65  E-value: 4.23e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 489487052  1 MRVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-49 1.40e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 69.84  E-value: 1.40e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 489487052  1 MRVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:PRK00595  5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-49 1.23e-15

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 62.44  E-value: 1.23e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 489487052   4 NITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-49 1.35e-09

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 47.44  E-value: 1.35e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 489487052   2 RVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 4.23e-20

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 73.65  E-value: 4.23e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 489487052  1 MRVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-49 1.40e-18

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 69.84  E-value: 1.40e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 489487052  1 MRVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:PRK00595  5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-49 4.65e-18

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 68.79  E-value: 4.65e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 489487052  1 MRVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:PRK00504  2 MRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-49 1.23e-15

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 62.44  E-value: 1.23e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 489487052   4 NITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-49 1.35e-09

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 47.44  E-value: 1.35e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 489487052   2 RVNITLACTECGERNYISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpl33 CHL00104
ribosomal protein L33
 2-49 1.44e-08

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 44.96  E-value: 1.44e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 489487052  2 RVNITLACTECGERN----------YISTKNKRTTTERVELKKYCSRDKKQTLHRETK 49
Cdd:CHL00104  8 RVTVILECTSCVRNGvnkestgisrYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH