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Conserved domains on  [gi|489336166|ref|WP_003243386|]
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MULTISPECIES: response regulator aspartate phosphatase RapG [Bacillus]

Protein Classification

Rap family tetratricopeptide repeat protein( domain architecture ID 16068695)

Rap family tetratricopeptide repeat (TPR) protein, similar to Bacillus subtilis response regulator aspartate phosphatases and regulatory proteins RapG/RapK

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  21346797|22404999|21153002|10517866|30708253|37042030
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 3-64 3.38e-22

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


:

Pssm-ID: 436748  Cd Length: 62  Bit Score: 88.36  E-value: 3.38e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489336166    3 KIAPAEIASMLNDWYLAIKKHEVEESSRLFEEVKPLLDDMEEDQEVLAYFSLLELRHKVLLH 64
Cdd:pfam18801   1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 43-256 1.50e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 1.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  43 EEDQEVLAYFSLLELRHKVLLHEARGQGFQHEEPSHMNATSDMLKYYFFLFEGMYEAYKNNYDIAIGLYKDAeqyLDNIP 122
Cdd:COG3914   33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA---LALNP 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 123 DpieKAEFHLKVGKLYYKLGQnivslnhTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSEL 202
Cdd:COG3914  110 D---NAEALFNLGNLLLALGR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489336166 203 edhffeAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDEyarSAYYYHSAYLLIR 256
Cdd:COG3914  180 ------AEALNNLGNALQDLGRLEEAIAAYRRALELDP---DNADAHSNLLFAL 224
 
Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 3-64 3.38e-22

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


Pssm-ID: 436748  Cd Length: 62  Bit Score: 88.36  E-value: 3.38e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489336166    3 KIAPAEIASMLNDWYLAIKKHEVEESSRLFEEVKPLLDDMEEDQEVLAYFSLLELRHKVLLH 64
Cdd:pfam18801   1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 43-256 1.50e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 1.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  43 EEDQEVLAYFSLLELRHKVLLHEARGQGFQHEEPSHMNATSDMLKYYFFLFEGMYEAYKNNYDIAIGLYKDAeqyLDNIP 122
Cdd:COG3914   33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA---LALNP 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 123 DpieKAEFHLKVGKLYYKLGQnivslnhTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSEL 202
Cdd:COG3914  110 D---NAEALFNLGNLLLALGR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489336166 203 edhffeAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDEyarSAYYYHSAYLLIR 256
Cdd:COG3914  180 ------AEALNNLGNALQDLGRLEEAIAAYRRALELDP---DNADAHSNLLFAL 224
TPR_12 pfam13424
Tetratricopeptide repeat;
168-240 6.43e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 6.43e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489336166  168 LASALITMSGNFTEMSQFEEAEAYLDEAIRITSEL--EDHFFEAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDE 240
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 111-356 1.61e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 1.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  111 YKDAEQYLDNI----PDPIEKaefHLKVGKLYYKLGQNIvslnhtrQAVKTFREETDYKKKLASALITMSGNFTEMSQFE 186
Cdd:TIGR02917 175 FDEARALIDEVltadPGNVDA---LLLKGDLLLSLGNIE-------LALAAYRKAIALRPNNIAVLLALATILIEAGEFE 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  187 EAEAYLDEAIRIT-SELEDHFFEAqllhnfgLLHAQSGKSEEAVSKLEEALQNDeyarsAYYYHSAYLLIRELFKIKKKE 265
Cdd:TIGR02917 245 EAEKHADALLKKApNSPLAHYLKA-------LVDFQKKNYEDARETLQDALKSA-----PEYLPALLLAGASEYQLGNLE 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  266 QALSYYQDVkekLTAEPNRICEAKidILYAIYAEGGHAETFHLCKQHMDDLLSekeyDSVRELSiLAGERYRELELYKEA 345
Cdd:TIGR02917 313 QAYQYLNQI---LKYAPNSHQARR--LLASIQLRLGRVDEAIATLSPALGLDP----DDPAALS-LLGEAYLALGDFEKA 382

                         250
                  ....*....|.
gi 489336166  346 AHFFYEALQIE 356
Cdd:TIGR02917 383 AEYLAKATELD 393
 
Name Accession Description Interval E-value
RapH_N pfam18801
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ...
 3-64 3.38e-22

response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.


Pssm-ID: 436748  Cd Length: 62  Bit Score: 88.36  E-value: 3.38e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489336166    3 KIAPAEIASMLNDWYLAIKKHEVEESSRLFEEVKPLLDDMEEDQEVLAYFSLLELRHKVLLH 64
Cdd:pfam18801   1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 43-256 1.50e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 1.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  43 EEDQEVLAYFSLLELRHKVLLHEARGQGFQHEEPSHMNATSDMLKYYFFLFEGMYEAYKNNYDIAIGLYKDAeqyLDNIP 122
Cdd:COG3914   33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA---LALNP 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 123 DpieKAEFHLKVGKLYYKLGQnivslnhTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSEL 202
Cdd:COG3914  110 D---NAEALFNLGNLLLALGR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489336166 203 edhffeAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDEyarSAYYYHSAYLLIR 256
Cdd:COG3914  180 ------AEALNNLGNALQDLGRLEEAIAAYRRALELDP---DNADAHSNLLFAL 224
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 91-354 2.20e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 2.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  91 FLFEGMYEAYKNNYDIAIGLYKDAEQYldnipDPiEKAEFHLKVGKLYYKLG---------QNIVSLNHTR--------- 152
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALEL-----DP-ETVEAHLALGNLYRRRGeydrairihQKLLERDPDRaeallelaq 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 153 ---------QAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSEledhffEAQLLHNFGLLHAQSG 223
Cdd:COG2956   85 dylkaglldRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 224 KSEEAVSKLEEALQNDEYARSAYyyhsaYLLIRELFKIKKKEQALSYYQDVkekLTAEPNRIceAKIDILYAIYAEGGHA 303
Cdd:COG2956  159 DYDEAIEALEKALKLDPDCARAL-----LLLAELYLEQGDYEEAIAALERA---LEQDPDYL--PALPRLAELYEKLGDP 228

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489336166 304 ETFhlcKQHMDDLLSEKEYDSVRelsILAGERYRELELYKEAAHFFYEALQ 354
Cdd:COG2956  229 EEA---LELLRKALELDPSDDLL---LALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
138-351 3.30e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 3.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 138 YYKLGQNIVSLNHTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSELedhffeAQLLHNFGL 217
Cdd:COG0457   45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGL 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 218 LHAQSGKSEEAVSKLEEALQNDEYARSAYYYhsaylLIRELFKIKKKEQALSYYQdvKEKLTAEPNRICEAKIDILYAIY 297
Cdd:COG0457  119 ALLELGRYDEAIEAYERALELDPDDADALYN-----LGIALEKLGRYEEALELLE--KLEAAALAALLAAALGEAALALA 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489336166 298 AEGGHAETFHLCKQHMDDLLSEKEYDSVRELSILAGERYRELELYKEAAHFFYE 351
Cdd:COG0457  192 AAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
TPR_12 pfam13424
Tetratricopeptide repeat;
168-240 6.43e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 6.43e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489336166  168 LASALITMSGNFTEMSQFEEAEAYLDEAIRITSEL--EDHFFEAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDE 240
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 111-356 1.61e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 1.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  111 YKDAEQYLDNI----PDPIEKaefHLKVGKLYYKLGQNIvslnhtrQAVKTFREETDYKKKLASALITMSGNFTEMSQFE 186
Cdd:TIGR02917 175 FDEARALIDEVltadPGNVDA---LLLKGDLLLSLGNIE-------LALAAYRKAIALRPNNIAVLLALATILIEAGEFE 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  187 EAEAYLDEAIRIT-SELEDHFFEAqllhnfgLLHAQSGKSEEAVSKLEEALQNDeyarsAYYYHSAYLLIRELFKIKKKE 265
Cdd:TIGR02917 245 EAEKHADALLKKApNSPLAHYLKA-------LVDFQKKNYEDARETLQDALKSA-----PEYLPALLLAGASEYQLGNLE 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  266 QALSYYQDVkekLTAEPNRICEAKidILYAIYAEGGHAETFHLCKQHMDDLLSekeyDSVRELSiLAGERYRELELYKEA 345
Cdd:TIGR02917 313 QAYQYLNQI---LKYAPNSHQARR--LLASIQLRLGRVDEAIATLSPALGLDP----DDPAALS-LLGEAYLALGDFEKA 382

                         250
                  ....*....|.
gi 489336166  346 AHFFYEALQIE 356
Cdd:TIGR02917 383 AEYLAKATELD 393
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 181-284 2.01e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 2.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 181 EMSQFEEAEAYLDEAIRITSEledhffEAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDEYARSAYYYhsaylLIRELFK 260
Cdd:COG4235   29 RLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL-----LGLAAFQ 97

                         90       100
                 ....*....|....*....|....
gi 489336166 261 IKKKEQALSYYQDVKEKLTAEPNR 284
Cdd:COG4235   98 QGDYAEAIAAWQKLLALLPADAPA 121
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 138-272 2.01e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.95  E-value: 2.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 138 YYKLGQNIVSLNHTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSEledhffEAQLLHNFGL 217
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD------EPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489336166 218 LHAQSGKSEEAVSKLEEALQNDEYARSAYyyhsaYLLIRELFKIKKKEQALSYYQ 272
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAY-----LRLARAYRALGRPDEAIAALE 130
COG3899 COG3899
Predicted ATPase [General function prediction only];
104-237 3.46e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.92  E-value: 3.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  104 YDIAIGLYKDAEQYLDNIPDPIEKAEFHLKVGKLYYKLGQNIVSLNHTRQA----VKTFREETDYKKKLASALITMSGNF 179
Cdd:COG3899   721 YAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERAlaarALAALAALRHGNPPASARAYANLGL 800

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489336166  180 TEMSQFEEAEAYLDEAIRITSELEDHFFEAQLLHNFGLLHAQSGKSEEAVSKLEEALQ 237
Cdd:COG3899   801 LLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALE 858
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 107-250 4.26e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 42.29  E-value: 4.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 107 AIGLYKDAEQYLDNI----PDpieKAEFHLKVGKLYYKLGQnivslnhTRQAVKTFREETDYKKKLASALITMSGNFTEM 182
Cdd:COG3914  124 ALGRLEEALAALRRAlalnPD---FAEAYLNLGEALRRLGR-------LEEAIAALRRALELDPDNAEALNNLGNALQDL 193

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489336166 183 SQFEEAEAYLDEAIRITSELEDHFfeAQLLhnFGLLHAQSGKSEEAVSKLEEALQNDEYARSAYYYHS 250
Cdd:COG3914  194 GRLEEAIAAYRRALELDPDNADAH--SNLL--FALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 135-239 1.24e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 135 GKLYYKLGQNIVSLNHTRQAVKTFREETDYKKKLASALITMSGNFTEMSQFEEAEAYLDEAIRITSEledhffEAQLLHN 214
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD------NPEALYL 90

                         90       100
                 ....*....|....*....|....*
gi 489336166 215 FGLLHAQSGKSEEAVSKLEEALQND 239
Cdd:COG4235   91 LGLAAFQQGDYAEAIAAWQKLLALL 115
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
92-272 4.65e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.97  E-value: 4.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  92 LFEGMYEAYKNNYDIAIGLYKDAEQYLDNIPDPIEKAEFHLKVGKLYYKLGQNIVSLNHTRQAVKTFREETDYKKKLASA 171
Cdd:COG4785   30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166 172 LITMSGNFTEMSQFEEAEAYLDEAIritsELEDHFFEAqlLHNFGLLHAQSGKSEEAVSKLEEALQNDEYARSAYYYHsa 251
Cdd:COG4785  110 YNNRGLAYLLLGDYDAALEDFDRAL----ELDPDYAYA--YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL-- 181

                        170       180
                 ....*....|....*....|.
gi 489336166 252 YLLIRELFKIKKKEQALSYYQ 272
Cdd:COG4785  182 YLAERKLDPEKALALLLEDWA 202
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 95-239 5.93e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.71  E-value: 5.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489336166  95 GMYEAYKNNYDIAIGLYKDAeqyLDNIPDpieKAEFHLKVGKLYYKLGQNIVSLNHTRQAVKTFREETDYKKKLASALIt 174
Cdd:COG4783   11 AQALLLAGDYDEAEALLEKA---LELDPD---NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL- 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489336166 175 msgnftEMSQFEEAEAYLDEAIRITSEledhffEAQLLHNFGLLHAQSGKSEEAVSKLEEALQND 239
Cdd:COG4783   84 ------KAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELD 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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