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Conserved domains on  [gi|489200307|ref|WP_003109532|]
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MULTISPECIES: efflux RND transporter periplasmic adaptor subunit [Pseudomonas]

Protein Classification

efflux RND transporter periplasmic adaptor subunit( domain architecture ID 11436533)

efflux RND (resistance-nodulation-division) transporter periplasmic adaptor subunit, similar to Bacillus subtilis YknX, which is part of an unusual four-component transporter with a role in protection against sporulation-delaying-protein-induced killing

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
167-474 3.70e-76

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


:

Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 241.77  E-value: 3.70e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 167 SLAQVVSLPGEIRFneDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSP----QLSDQRSEFAAAQRRLSLAQSTY 242
Cdd:COG0845    7 DVPETVEATGTVEA--RREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPdlqaALAQAQAQLAAAQAQLELAKAEL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 243 KREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAALGGNPSlqggnRYELRAPFAGVLVEKHLTQGEPVDGTANV 322
Cdd:COG0845   85 ERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLA-----YTTIRAPFDGVVGERNVEPGQLVSAGTPL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 323 FTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQAL-DSEVEGTVSYIGDLLGEQTRAATARVTLSNPESTWRPGLFVSV 401
Cdd:COG0845  160 FTIADLDPLEVEFDVPESDLARLKVGQPVTVTLDAGpGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRPGMFVRV 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489200307 402 QVAEATRKEVLTVADGAVQNVDGEDVVFVRVADG-FVVQPVKLGISDGQRVEVLEGLRAGSQVAASGSFILKSE 474
Cdd:COG0845  240 RIVLGERENALLVPASAVVRDGGGAYVFVVDADGkVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDG 313
 
Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
167-474 3.70e-76

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 241.77  E-value: 3.70e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 167 SLAQVVSLPGEIRFneDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSP----QLSDQRSEFAAAQRRLSLAQSTY 242
Cdd:COG0845    7 DVPETVEATGTVEA--RREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPdlqaALAQAQAQLAAAQAQLELAKAEL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 243 KREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAALGGNPSlqggnRYELRAPFAGVLVEKHLTQGEPVDGTANV 322
Cdd:COG0845   85 ERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLA-----YTTIRAPFDGVVGERNVEPGQLVSAGTPL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 323 FTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQAL-DSEVEGTVSYIGDLLGEQTRAATARVTLSNPESTWRPGLFVSV 401
Cdd:COG0845  160 FTIADLDPLEVEFDVPESDLARLKVGQPVTVTLDAGpGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRPGMFVRV 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489200307 402 QVAEATRKEVLTVADGAVQNVDGEDVVFVRVADG-FVVQPVKLGISDGQRVEVLEGLRAGSQVAASGSFILKSE 474
Cdd:COG0845  240 RIVLGERENALLVPASAVVRDGGGAYVFVVDADGkVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDG 313
HlyD_D23 pfam16576
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and ...
167-399 2.40e-40

Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.


Pssm-ID: 435440 [Multi-domain]  Cd Length: 214  Bit Score: 144.19  E-value: 2.40e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  167 SLAQVVSLPGEIRFNEDRTAHIVPRLPGIVDSVPAN-LGQAVKQGELLAVISSPQLsdqrsefaaaqrrlslaqstykre 245
Cdd:pfam16576   1 PLSRTIRAVGRVAYDERRLAHVHARVEGWIEKLYVNaTGDPVKKGQPLAELYSPEL------------------------ 56
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  246 qqlwkegISAEQEFLLARQGLQEAEIA--LNNARAKIAALGGNPSL--------QGGNRYELRAPFAGVLVEKHLTQGEP 315
Cdd:pfam16576  57 -------VAAQQEYLLALRSGDALSKSelLRAARQRLRLLGMPEAQiaelertgKVQPTVTVYAPISGVVTELNVREGMY 129
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  316 VDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQAL-DSEVEGTVSYIGDLLGEQTRAATARVTLSNPESTWR 394
Cdd:pfam16576 130 VQPGDTLFTIADLSTVWVEADVPEQDLALVKVGQPAEVTLPALpGKTFEGKVDYIYPTLDPKTRTVRVRIELPNPDGRLK 209

                  ....*
gi 489200307  395 PGLFV 399
Cdd:pfam16576 210 PGMFA 214
RND_mfp TIGR01730
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ...
158-472 9.96e-37

RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273776 [Multi-domain]  Cd Length: 322  Bit Score: 137.83  E-value: 9.96e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  158 ITLDTARTISLAQVVSLPGEIRFNEDrtAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSP----QLSDQRSEFAAAQR 233
Cdd:TIGR01730   1 VTVATVESETLANTLTFPGSLEAVDE--ADLAAEVAGKITKISVREGQKVKKGQVLARLDDDdyqlALQAALAQLAAAEA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  234 RLSLAQSTYKREQQLWKEGI-------SAEQEFLLARQGLQEAEIALNNARAKIAalggnpslqggnRYELRAPFAGVLV 306
Cdd:TIGR01730  79 QLELAQRSFERAERLVKRNAvsqadldDAKAAVEAAQADLEAAKASLASAQLNLR------------YTEIRAPFDGTIG 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  307 EKHLTQGEPVDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQALDS-EVEGTVSYIGDLLGEQTRAATARVT 385
Cdd:TIGR01730 147 RRLVEVGAYVTAGQTLATIVDLDPLEADFSVPERDLPQLRRGQTLTVELDALPGeEFKGKLRFIDPRVDSGTGTVRVRAT 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  386 LSNPESTWRPGLFVSVQVAEATRKEVLTVADGAVQNVDGEDVVFVRVADGFVV-QPVKLGISDGQRVEVLEGLRAGSQVA 464
Cdd:TIGR01730 227 FPNPDGRLLPGMFGRVTISLKVRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSkRPVEVGLRNGGYVEIESGLKAGDQIV 306

                  ....*...
gi 489200307  465 ASGSFILK 472
Cdd:TIGR01730 307 TAGVVKLR 314
PRK09859 PRK09859
multidrug transporter subunit MdtE;
150-467 1.78e-13

multidrug transporter subunit MdtE;


Pssm-ID: 137559 [Multi-domain]  Cd Length: 385  Bit Score: 71.67  E-value: 1.78e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 150 AEQIEAA----GITLDTARTISLAQvvSLPGeiRFNEDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVIS----SPQL 221
Cdd:PRK09859  26 AENAAAMtpevGVVTLSPGSVNVLS--ELPG--RTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDpaplQAEL 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 222 SDQRSEFAAAQRRLSLAQSTYKREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAALGGNpsLQGGNryeLRAPF 301
Cdd:PRK09859 102 NSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATIN--LQYAN---VTSPI 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 302 AGVLVEKHLTQGEPVdgTAN----VFTLSDLSSVWATFNVPAQ----LLGQVRVGSKVKVLAQ---ALDSE------VEG 364
Cdd:PRK09859 177 TGVSGKSSVTVGALV--TANqadsLVTVQRLDPIYVDLTQSVQdflrMKEEVASGQIKQVQGStpvQLNLEngkrysQTG 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 365 TVSYIGDLLGEQTRAATARVTLSNPESTWRPGLFVSVQVAEATRKEVLTV-ADGAVQNVDGEDVVFVRVADGFVVQ-PVK 442
Cdd:PRK09859 255 TLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVpQEGVTHNAQGKATALILDKDDVVQLrEIE 334
                        330       340
                 ....*....|....*....|....*
gi 489200307 443 LGISDGQRVEVLEGLRAGSQVAASG 467
Cdd:PRK09859 335 ASKAIGDQWVVTSGLQAGDRVIVSG 359
 
Name Accession Description Interval E-value
AcrA COG0845
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ...
167-474 3.70e-76

Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];


Pssm-ID: 440606 [Multi-domain]  Cd Length: 324  Bit Score: 241.77  E-value: 3.70e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 167 SLAQVVSLPGEIRFneDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSP----QLSDQRSEFAAAQRRLSLAQSTY 242
Cdd:COG0845    7 DVPETVEATGTVEA--RREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPdlqaALAQAQAQLAAAQAQLELAKAEL 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 243 KREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAALGGNPSlqggnRYELRAPFAGVLVEKHLTQGEPVDGTANV 322
Cdd:COG0845   85 ERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLA-----YTTIRAPFDGVVGERNVEPGQLVSAGTPL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 323 FTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQAL-DSEVEGTVSYIGDLLGEQTRAATARVTLSNPESTWRPGLFVSV 401
Cdd:COG0845  160 FTIADLDPLEVEFDVPESDLARLKVGQPVTVTLDAGpGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRPGMFVRV 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489200307 402 QVAEATRKEVLTVADGAVQNVDGEDVVFVRVADG-FVVQPVKLGISDGQRVEVLEGLRAGSQVAASGSFILKSE 474
Cdd:COG0845  240 RIVLGERENALLVPASAVVRDGGGAYVFVVDADGkVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDG 313
HlyD_D23 pfam16576
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and ...
167-399 2.40e-40

Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.


Pssm-ID: 435440 [Multi-domain]  Cd Length: 214  Bit Score: 144.19  E-value: 2.40e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  167 SLAQVVSLPGEIRFNEDRTAHIVPRLPGIVDSVPAN-LGQAVKQGELLAVISSPQLsdqrsefaaaqrrlslaqstykre 245
Cdd:pfam16576   1 PLSRTIRAVGRVAYDERRLAHVHARVEGWIEKLYVNaTGDPVKKGQPLAELYSPEL------------------------ 56
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  246 qqlwkegISAEQEFLLARQGLQEAEIA--LNNARAKIAALGGNPSL--------QGGNRYELRAPFAGVLVEKHLTQGEP 315
Cdd:pfam16576  57 -------VAAQQEYLLALRSGDALSKSelLRAARQRLRLLGMPEAQiaelertgKVQPTVTVYAPISGVVTELNVREGMY 129
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  316 VDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQAL-DSEVEGTVSYIGDLLGEQTRAATARVTLSNPESTWR 394
Cdd:pfam16576 130 VQPGDTLFTIADLSTVWVEADVPEQDLALVKVGQPAEVTLPALpGKTFEGKVDYIYPTLDPKTRTVRVRIELPNPDGRLK 209

                  ....*
gi 489200307  395 PGLFV 399
Cdd:pfam16576 210 PGMFA 214
RND_mfp TIGR01730
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ...
158-472 9.96e-37

RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 273776 [Multi-domain]  Cd Length: 322  Bit Score: 137.83  E-value: 9.96e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  158 ITLDTARTISLAQVVSLPGEIRFNEDrtAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSP----QLSDQRSEFAAAQR 233
Cdd:TIGR01730   1 VTVATVESETLANTLTFPGSLEAVDE--ADLAAEVAGKITKISVREGQKVKKGQVLARLDDDdyqlALQAALAQLAAAEA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  234 RLSLAQSTYKREQQLWKEGI-------SAEQEFLLARQGLQEAEIALNNARAKIAalggnpslqggnRYELRAPFAGVLV 306
Cdd:TIGR01730  79 QLELAQRSFERAERLVKRNAvsqadldDAKAAVEAAQADLEAAKASLASAQLNLR------------YTEIRAPFDGTIG 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  307 EKHLTQGEPVDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQALDS-EVEGTVSYIGDLLGEQTRAATARVT 385
Cdd:TIGR01730 147 RRLVEVGAYVTAGQTLATIVDLDPLEADFSVPERDLPQLRRGQTLTVELDALPGeEFKGKLRFIDPRVDSGTGTVRVRAT 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  386 LSNPESTWRPGLFVSVQVAEATRKEVLTVADGAVQNVDGEDVVFVRVADGFVV-QPVKLGISDGQRVEVLEGLRAGSQVA 464
Cdd:TIGR01730 227 FPNPDGRLLPGMFGRVTISLKVRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSkRPVEVGLRNGGYVEIESGLKAGDQIV 306

                  ....*...
gi 489200307  465 ASGSFILK 472
Cdd:TIGR01730 307 TAGVVKLR 314
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
155-403 4.50e-30

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 119.77  E-value: 4.50e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 155 AAGITLDTARTISLAQVVSLPGEIrfnEDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSPQLSDQ---------- 224
Cdd:COG1566   18 ALGLALWAAGRNGPDEPVTADGRV---EARVVTVAAKVSGRVTEVLVKEGDRVKKGQVLARLDPTDLQAAlaqaeaqlaa 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 225 ---------------------RSEFAAAQRRLSLAQSTYKREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAAL 283
Cdd:COG1566   95 aeaqlarleaelgaeaeiaaaEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQLAQA 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 284 GGNPSLQGG----------------------NRYELRAPFAGVLVEKHLTQGEPVDGTANVFTLSDLSSVWATFNVPAQL 341
Cdd:COG1566  175 QAGLREEEElaaaqaqvaqaeaalaqaelnlARTTIRAPVDGVVTNLNVEPGEVVSAGQPLLTIVPLDDLWVEAYVPETD 254
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489200307 342 LGQVRVGSKVKVLAQAL-DSEVEGTVSYIGDLLGEQTRAATA----------RVTLSNPES-TWRPGLFVSVQV 403
Cdd:COG1566  255 LGRVKPGQPVEVRVDAYpDRVFEGKVTSISPGAGFTSPPKNAtgnvvqrypvRIRLDNPDPePLRPGMSATVEI 328
CusB_dom_1 pfam00529
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ...
168-464 3.47e-24

Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 102.89  E-value: 3.47e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  168 LAQVVSLPGEIRFNEDRTAhIVPRLPGIVDSVPANLGQAVKQGELLAVISSPQLSDQRSE----FAAAQRRLSLAQSTYK 243
Cdd:pfam00529   4 LTKGVEAPGRVVVSGNAKA-VQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALDSaeaqLAKAQAQVARLQAELD 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  244 REQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAALGGNPslqggNRYELRAPFAGVLVEKHLTQGEPVDGTANVF 323
Cdd:pfam00529  83 RLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDL-----ARRRVLAPIGGISRESLVTAGALVAQAQANL 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  324 --TLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQALDSEVE------------------GTVSYIGDLLGEQTRAATAR 383
Cdd:pfam00529 158 laTVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAElklakldlerteirapvdGTVAFLSVTVDGGTVSAGLR 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  384 VTLSNPE-STWRPGLFVSVQVAEA-TRKEVLTVADGAVQNVDGEDVVFVR-VADGFVVQPVKLGISDGQRVEVLEGLRAG 460
Cdd:pfam00529 238 LMFVVPEdNLLVPGMFVETQLDQVrVGQPVLIPFDAFPQTKTGRFTGVVVgISPDTGPVRVVVDKAQGPYYPLRIGLSAG 317

                  ....
gi 489200307  461 SQVA 464
Cdd:pfam00529 318 ALVR 321
HlyD_3 pfam13437
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator ...
296-396 1.44e-15

HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator HlyD proteins.


Pssm-ID: 433206 [Multi-domain]  Cd Length: 104  Bit Score: 72.39  E-value: 1.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  296 ELRAPFAGVLVEKHLTQGEPVDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKV-LAQALDSEVEGTVSYIGDLLG 374
Cdd:pfam13437   1 TIRAPVDGVVAELNVEEGQVVQAGDPLATIVPPDRLLVEAFVPAADLGSLKKGQKVTLkLDPGSDYTLEGKVVRISPTVD 80
                          90       100
                  ....*....|....*....|....
gi 489200307  375 EQTRAATARVTLSNP--ESTWRPG 396
Cdd:pfam13437  81 PDTGVIPVRVSIENPktPIPLLPG 104
PRK09859 PRK09859
multidrug transporter subunit MdtE;
150-467 1.78e-13

multidrug transporter subunit MdtE;


Pssm-ID: 137559 [Multi-domain]  Cd Length: 385  Bit Score: 71.67  E-value: 1.78e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 150 AEQIEAA----GITLDTARTISLAQvvSLPGeiRFNEDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVIS----SPQL 221
Cdd:PRK09859  26 AENAAAMtpevGVVTLSPGSVNVLS--ELPG--RTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDpaplQAEL 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 222 SDQRSEFAAAQRRLSLAQSTYKREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAALGGNpsLQGGNryeLRAPF 301
Cdd:PRK09859 102 NSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATIN--LQYAN---VTSPI 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 302 AGVLVEKHLTQGEPVdgTAN----VFTLSDLSSVWATFNVPAQ----LLGQVRVGSKVKVLAQ---ALDSE------VEG 364
Cdd:PRK09859 177 TGVSGKSSVTVGALV--TANqadsLVTVQRLDPIYVDLTQSVQdflrMKEEVASGQIKQVQGStpvQLNLEngkrysQTG 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 365 TVSYIGDLLGEQTRAATARVTLSNPESTWRPGLFVSVQVAEATRKEVLTV-ADGAVQNVDGEDVVFVRVADGFVVQ-PVK 442
Cdd:PRK09859 255 TLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVpQEGVTHNAQGKATALILDKDDVVQLrEIE 334
                        330       340
                 ....*....|....*....|....*
gi 489200307 443 LGISDGQRVEVLEGLRAGSQVAASG 467
Cdd:PRK09859 335 ASKAIGDQWVVTSGLQAGDRVIVSG 359
PRK09783 PRK09783
copper/silver efflux system membrane fusion protein CusB; Provisional
148-474 4.75e-13

copper/silver efflux system membrane fusion protein CusB; Provisional


Pssm-ID: 236625 [Multi-domain]  Cd Length: 409  Bit Score: 70.67  E-value: 4.75e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 148 LDAEQIEAAGITLDTARTISLAQVVSLPGEIRFNEDRTAHIVPRLPGIVDSV-PANLGQAVKQGELLAVISSPQLSDQRS 226
Cdd:PRK09783  86 IDPTQTQNLGVKTATVTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVyPLTVGDKVQKGTPLLDLTIPDWVEAQS 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 227 EFaaaqrrLSLAQSTykreqqlwkeGISAEQEFLLAR---QGLQEAEIALNNARAKIAAlggnpslqggnRYELRAPFAG 303
Cdd:PRK09783 166 EY------LLLRETG----------GTATQTEGILERlrlAGMPEADIRRLIATRKIQT-----------RFTLKAPIDG 218
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 304 VLVEKHLTQGEPVDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKVLAQALDSEvEGTVSYIGDLLG--EQTRAAT 381
Cdd:PRK09783 219 VITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDK-TFTIRKWTLLPSvdAATRTLQ 297
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 382 ARVTLSNPESTWRPGLFVSVQVAEATRKEVLTVADGAVQNVDGEDVVFVRVADGFVVQPVKLGISDGQRVEVLEGLRAGS 461
Cdd:PRK09783 298 LRLEVDNADEALKPGMNAWLQLNTASEPMLLIPSQALIDTGSEQRVITVDADGRFVPKRVAVFQESQGVTAIRSGLAEGE 377
                        330
                 ....*....|...
gi 489200307 462 QVAASGSFILKSE 474
Cdd:PRK09783 378 KVVSSGLFLIDSE 390
PRK15030 PRK15030
multidrug efflux RND transporter periplasmic adaptor subunit AcrA;
150-467 2.91e-11

multidrug efflux RND transporter periplasmic adaptor subunit AcrA;


Pssm-ID: 184990 [Multi-domain]  Cd Length: 397  Bit Score: 65.12  E-value: 2.91e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 150 AEQIEAAGITldTARTISLAQVVSLPGeiRFNEDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVIS----SPQLSDQR 225
Cdd:PRK15030  34 GQQMPAVGVV--TVKTEPLQITTELPG--RTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDpatyQATYDSAK 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 226 SEFAAAQRRLSLAQSTYKREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAALGGNPSLQggnryELRAPFAGVL 305
Cdd:PRK15030 110 GDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYT-----KVTSPISGRI 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 306 VEKHLTQGEPV-DGTANVF-TLSDLSSVWATFNVPAQ------------LLGQVRVGSKVK-VLAQALDSEVEGTVSYIG 370
Cdd:PRK15030 185 GKSNVTEGALVqNGQATALaTVQQLDPIYVDVTQSSNdflrlkqelangTLKQENGKAKVSlITSDGIKFPQDGTLEFSD 264
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 371 DLLGEQTRAATARVTLSNPESTWRPGLFVSVQVAEATRKEVLTV-ADGAVQNVDGEDVVFVRVADGFV-VQPVKLGISDG 448
Cdd:PRK15030 265 VTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVpQQGVTRTPRGDATVLVVGADDKVeTRPIVASQAIG 344
                        330
                 ....*....|....*....
gi 489200307 449 QRVEVLEGLRAGSQVAASG 467
Cdd:PRK15030 345 DKWLVTEGLKAGDRVVISG 363
PRK11556 PRK11556
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
204-467 1.09e-08

MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;


Pssm-ID: 183194 [Multi-domain]  Cd Length: 415  Bit Score: 57.11  E-value: 1.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 204 GQAVKQGELLAVIS-SP---QLSDQRSEFAAAQRRLSLAQSTYKREQQLWKEGISAEQEfLLARQGL---QEAEI----- 271
Cdd:PRK11556 106 GQQVKAGDLLAEIDpRPfkvALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQE-LDAQQALvseTEGTIkadea 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 272 ALNNAR---------AKIAALGGNPSLQGGNrYELRAPFAGVLVekhLTQGEPVDgtaNVFTL--SDLSSVwatfnVPAQ 340
Cdd:PRK11556 185 SVASAQlqldysritAPISGRVGLKQVDVGN-QISSGDTTGIVV---ITQTHPID---LVFTLpeSDIATV-----VQAQ 252
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 341 LLGQvrvgskvKVLAQALDSEVEGTVSYiGDLLG--EQTRAATARVTL----SNPESTWRPGLFVSVQVAEATRKEVLTV 414
Cdd:PRK11556 253 KAGK-------PLVVEAWDRTNSKKLSE-GTLLSldNQIDATTGTIKLkarfNNQDDALFPNQFVNARMLVDTLQNAVVI 324
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 489200307 415 ADGAVQNvdGEDVVFVRVADG---FVVQPVKLGISDGQRVEVLEGLRAGSQVAASG 467
Cdd:PRK11556 325 PTAALQM--GNEGHFVWVLNDenkVSKHLVTPGIQDSQKVVISAGLSAGDRVVTDG 378
PRK11578 PRK11578
macrolide transporter subunit MacA; Provisional
202-466 4.82e-07

macrolide transporter subunit MacA; Provisional


Pssm-ID: 183211 [Multi-domain]  Cd Length: 370  Bit Score: 51.70  E-value: 4.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 202 NLGQAVKQGELLAVISSPQLSDQRSEFAA------AQRR-----LSLAQSTYKREQQLWKEGisaeqefLLARQGLQEAE 270
Cdd:PRK11578  78 AIGDKVKKDQLLGVIDPEQAENQIKEVEAtlmelrAQRQqaeaeLKLARVTLSRQQRLAKTQ-------AVSQQDLDTAA 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 271 IALNNARAKIAALGGN-----PSLQGGN---RY-ELRAPFAGVLVEKHLTQGEPVDGT---ANVFTLSDLSSVWATFNVP 338
Cdd:PRK11578 151 TELAVKQAQIGTIDAQikrnqASLDTAKtnlDYtRIVAPMAGEVTQITTLQGQTVIAAqqaPNILTLADMSTMLVKAQVS 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 339 AQLLGQVRVGSKV--KVLAqALDSEVEGTvsyIGDLL--GEQTRAA---TARVTLSNPESTWRPGLFVSVQVAEATRKEV 411
Cdd:PRK11578 231 EADVIHLKPGQKAwfTVLG-DPLTRYEGV---LKDILptPEKVNDAifyYARFEVPNPNGLLRLDMTAQVHIQLTDVKNV 306
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489200307 412 LTVADGAVQNVDGEDVVFVRVADGFVVQP--VKLGISDGQRVEVLEGLRAGSQVAAS 466
Cdd:PRK11578 307 LTIPLSALGDPVGDNRYKVKLLRNGETREreVTIGARNDTDVEIVKGLEAGDEVIIG 363
PRK03598 PRK03598
putative efflux pump membrane fusion protein; Provisional
225-353 6.37e-07

putative efflux pump membrane fusion protein; Provisional


Pssm-ID: 235136 [Multi-domain]  Cd Length: 331  Bit Score: 51.12  E-value: 6.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 225 RSEFAAAQRRLSLAQSTYKREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAAlggnpsLQGGNRYE-------- 296
Cdd:PRK03598 113 RAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQ------YREGNRPQdiaqakas 186
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489200307 297 -------------------LRAPFAGVLVEKHLTQGEPVDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKV 353
Cdd:PRK03598 187 laqaqaalaqaelnlqdteLIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTRPVWVRAYVDERNLGQAQPGRKVLL 262
PRK10476 PRK10476
multidrug transporter subunit MdtN;
185-353 1.51e-05

multidrug transporter subunit MdtN;


Pssm-ID: 182488 [Multi-domain]  Cd Length: 346  Bit Score: 46.94  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 185 TAHIVPRLPGIVDSVPANLGQAVKQGELL-----------------------AVISSPQ--LSDQRSEFAA-------AQ 232
Cdd:PRK10476  48 VVHVASEVGGRIVELAVTENQAVKKGDLLfridprpyeltvaqaqadlaladAQIMTTQrsVDAERSNAASaneqverAR 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 233 RRLSLAQSTYKREQQLWKEGISAEQEFLLARQGLQEAEIALNNAR----AKIAALGGNPSLQGG----------NRYEL- 297
Cdd:PRK10476 128 ANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALlqaqAAAAAVGGVDALVAQraareaalaiAELHLe 207
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 298 ----RAPFAGVLVEKHLTQGEPVDGTANVFTLSDLSSVWATFNVPAQLLGQVRVGSKVKV 353
Cdd:PRK10476 208 dttvRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTDHWYAIANFRETDLKNIRVGDCATV 267
PRK09578 PRK09578
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit;
143-463 1.83e-04

MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit;


Pssm-ID: 169982 [Multi-domain]  Cd Length: 385  Bit Score: 43.63  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 143 EGKLELDAEQIEAAGITLDTARTISLAQVVSLPGeiRFNEDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSPQLS 222
Cdd:PRK09578  23 CGKGDSDAAAAAPREATVVTVRPTSVPMTVELPG--RLDAYRQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLK 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 223 DQRSefaAAQRRLSLAQSTY-------KREQQLWKEGISAEQEFLLARQGLQEAEIALNNARAKIAalggNPSLQGGnRY 295
Cdd:PRK09578 101 AARD---AAAGALAKAEAAHlaaldkrRRYDDLVRDRAVSERDYTEAVADERQAKAAVASAKAELA----RAQLQLD-YA 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 296 ELRAPFAGVLVEKHLTQGEPV--DGTANVFTLSDLSSVWATFNVPA----QLLGQVRVGsKVKVLAQAlDSEV-----EG 364
Cdd:PRK09578 173 TVTAPIDGRARRALVTEGALVgqDQATPLTTVEQLDPIYVNFSQPAadveALRRAVKSG-RATGIAQQ-DVAVtlvraDG 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307 365 TVS------YIGDLLGEQTRAATA-RVTLSNPESTWRPGLFVSVQVAEATRKEVLTVADGAVQNVDGEDVVFVRVADGfV 437
Cdd:PRK09578 251 SEYplkgklLFSDLAVDPTTDTVAmRALFPNPERELLPGAYVRIALDRAVNPRAILVPRDALLRTADSASVKVVGQNG-K 329
                        330       340
                 ....*....|....*....|....*....
gi 489200307 438 VQPVKL---GISDGQRVeVLEGLRAGSQV 463
Cdd:PRK09578 330 VRDVEVeadQMSGRDWI-VTRGLAGGERV 357
heterocyst_DevB TIGR02971
ABC exporter membrane fusion protein, DevB family; Members of this protein family are found ...
102-403 2.31e-04

ABC exporter membrane fusion protein, DevB family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.


Pssm-ID: 213754 [Multi-domain]  Cd Length: 327  Bit Score: 43.28  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  102 LFKASGDGLVANAGIAEPHAFTARL-KLMAGKQGYDFAfTREEGKLELDAEQIEAAGITLDTARTISLAQVVSLPGEIRF 180
Cdd:TIGR02971  30 LLVAEGDRVQAGQVLAELDSRPERTaELDVARTQLDEA-KARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNR 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  181 --NEDRTAHI-VPRLPGIVdSVPANLGQAVKQGELlavisspQLSDQRSEFAAAQRRLSLAQSTYKREQQLWKEGIsAEQ 257
Cdd:TIGR02971 109 leAELETAQReVDRYRSLF-RDGAVSASDLDSKAL-------KLRTAEEELEEALASRSEQIDGARAALASLAEEV-RET 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489200307  258 EFLLARQGLQEAEIALNNARAKIaalggnpslqggNRYELRAPFAGVLVEKHLTQGEPVdGTANVFTLSDLSSVWATFNV 337
Cdd:TIGR02971 180 DVDLAQAEVKSALEAVQQAEALL------------ELTYVKAPIDGRVLKIHAREGEVI-GSEGILEMGDTSQMYAVAEV 246
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489200307  338 PAQLLGQVRVGSKVKVLAQALDSEVEGTVSYIGDLLGEQT------------RAATARVTLsNPESTWRPGLFVSVQV 403
Cdd:TIGR02971 247 YETDINRVRVGQRATITSTALSGPLRGTVRRIGSLIAKNDvlstdpaadadaRVVEVKIRL-DPASSERVGRLTNLQV 323
OEP pfam02321
Outer membrane efflux protein; The OEP family (Outer membrane efflux protein) form trimeric ...
220-285 4.85e-03

Outer membrane efflux protein; The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.


Pssm-ID: 396757 [Multi-domain]  Cd Length: 181  Bit Score: 38.27  E-value: 4.85e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489200307  220 QLSDQRSEFAAAQRRLSLAQSTYKREQQLWKEG-------ISAEQEFLLARQGLQEAEIALNNARAKIAALGG 285
Cdd:pfam02321 109 QLLAAKEQLELAEQALELAEEALELAEARYEAGlislldvLQAEVELLEARLELLNAEADLELALAQLEQLLG 181
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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