|
Name |
Accession |
Description |
Interval |
E-value |
| type_II_gspD |
TIGR02517 |
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ... |
48-606 |
8.38e-160 |
|
type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274175 [Multi-domain] Cd Length: 594 Bit Score: 476.49 E-value: 8.38e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 48 INMKDAEIGDFIEQVSSISGQTFVVDPRVKGRVTVVSQARLSLAEVYQLFLSVLATHGYAVLPQGDQARIVPnmeARQDA 127
Cdd:TIGR02517 1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVV---PRAAA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 128 AQKTV--------RDGPGSLETRVVQAQQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRA 199
Cdd:TIGR02517 78 KLSPGpiedgpapGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 200 GEHDYSIYDMRHAWVAEIAEVLDR-SVTPAAGKSAATVQVLADSRSNRLVLLGP-PQARARLLRLAQSLDVPSSRSANSR 277
Cdd:TIGR02517 158 GAGSVEVIPLKNASAVDIADVLNKlLGEGGKTDGGGKLSVIAPDRRNNILIRAGsPEALERIKKLISQLDVPASEGGNVR 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 278 VIRLRHGDAKTLAATLGEIGESLhGERGQDGRGSGKRGLL--------------------VRADESLNALVILADPEDVG 337
Cdd:TIGR02517 238 VYYLRNADAEELAKTLQGVFGGG-GNEPGSSSSPGLGGAVnpggsqsaqaassasggsvsGSADKATNSLIITASPQDYK 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 338 LLEDIVRQLDVPRAQLLVEAAIVELSGEIGDALGVQWALRSGHvaGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVG 417
Cdd:TIGR02517 317 NIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTG--GGVNFSTGSPNSGSLLGASASAISLGSAGIGLLVT 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 418 -----------LGSRDFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTS-ASGSSNPFTTVERKD 485
Cdd:TIGR02517 395 sssttsgvggtGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGtGGTNANPFNTYQRKD 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 486 IGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAkAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLL 565
Cdd:TIGR02517 475 VGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTVGSA-ASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLL 553
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 489197383 566 GDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAGLERIS 606
Cdd:TIGR02517 554 GDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
|
|
| PulD |
COG1450 |
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ... |
278-614 |
7.91e-94 |
|
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441059 [Multi-domain] Cd Length: 333 Bit Score: 296.06 E-value: 7.91e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 278 VIRLRHGDAKTLAATLGEIGeslhgergqdgrgSGKRGLLVRADESLNALVILADPEDVGLLEDIVRQLDVPRAQLLVEA 357
Cdd:COG1450 19 VLRALYADAEDLAKVLRSLL-------------GGAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 358 AIVELSGEIGDALGVQWALRSGHvAGGAGFADSGlSIGTLLGAlqagkppAELPDGAIVGL-GSRDFGALVTALSRNSRS 436
Cdd:COG1450 86 KIVEVSLSDLRELGIDWSALGGN-GGGVNFGGTG-SLGSLAAA-------GSLGGGLNLGLlGGGNFGALLNALESNGDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 437 NLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTSASGssNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPT 516
Cdd:COG1450 157 NVLSSPSILTLNNQEAVIKVGQTVPYVTGSTTTSSTG--NPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGS 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 517 ATlAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIV 596
Cdd:COG1450 235 TT-GGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTII 313
|
330
....*....|....*...
gi 489197383 597 RDAAGLERIShGRYRSIQ 614
Cdd:COG1450 314 RDGEDAQALT-EEYDRLR 330
|
|
| IV |
PHA00019 |
phage assembly protein |
47-597 |
2.18e-52 |
|
phage assembly protein
Pssm-ID: 222772 [Multi-domain] Cd Length: 428 Bit Score: 188.10 E-value: 2.18e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 47 TINMKDAEIGDFIEQVSSISGQTFVVDPRVKGRVTVVSqARLSLAEVYQLFLSVLATHGYAVLPQGDQ--ARIVPNMEAR 124
Cdd:PHA00019 25 PVELNNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYS-ADVNPANLPQFFDSVLRANGFDLVAGGPAvvIKQNPNQEDY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 125 QDAAQKTVRDGPgsletrvvqaqqtsvaelipmirplvpahgHLAAVPSANALIVSDrrsnierieAIVRsldragehdy 204
Cdd:PHA00019 104 ADDLRDSRDDVF------------------------------YDNSVPSGAPEVPND---------LIVR---------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 205 sIYDMRHAWVAEIAEVLDRSVTpaaGKSAATVQVLADSRSNRLVLLGPpqararllrlAQSLDVpssrsansrvirlrhg 284
Cdd:PHA00019 135 -TFNINNVRASDLLPLVKIFVK---SNGAPGGSVTDLPGTNSLVVSGS----------ASQLPA---------------- 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 285 daktlaatlgeigeslhgergqdgrgsgkrgllvradeslnalviladpedvglLEDIVRQLDVPRAQLLVEAAIVELSg 364
Cdd:PHA00019 185 ------------------------------------------------------LADFISAIDVPRRQVLIEALIFETS- 209
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 365 eIGDalGVQWALRSGHVAGGA---GFADSGLsiGTLLGAlqAGkppaelpdGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Cdd:PHA00019 210 -LGD--GVDLSFAAGLASGGKvagGFNTARL--TTVLSS--AG--------GSFGIFNGNVLGLSVKALENSSNSRVLSR 274
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATlaa 521
Cdd:PHA00019 275 PRILTLSGQSGYISVGQNVPFVTGRVTGEAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTI--- 351
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489197383 522 kAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVR 597
Cdd:PHA00019 352 -ASDIITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
|
|
| Secretin |
pfam00263 |
Bacterial type II and III secretion system protein; |
429-596 |
4.36e-49 |
|
Bacterial type II and III secretion system protein;
Pssm-ID: 459738 [Multi-domain] Cd Length: 159 Bit Score: 170.01 E-value: 4.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 429 ALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTSASGssnpfTTVERKDIGVTLKVTPHIGEDRMLRLEIEQ 508
Cdd:pfam00263 1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTT-----TTVEFKDAGLSLKVTPQVTPDGTITLKINP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 509 EISSIAPTATlaakAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588
Cdd:pfam00263 76 EVSSPDGNGG----NGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELL 151
|
....*...
gi 489197383 589 VFLRPSIV 596
Cdd:pfam00263 152 IFITPRIV 159
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| type_II_gspD |
TIGR02517 |
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ... |
48-606 |
8.38e-160 |
|
type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274175 [Multi-domain] Cd Length: 594 Bit Score: 476.49 E-value: 8.38e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 48 INMKDAEIGDFIEQVSSISGQTFVVDPRVKGRVTVVSQARLSLAEVYQLFLSVLATHGYAVLPQGDQARIVPnmeARQDA 127
Cdd:TIGR02517 1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVV---PRAAA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 128 AQKTV--------RDGPGSLETRVVQAQQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRA 199
Cdd:TIGR02517 78 KLSPGpiedgpapGVGGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 200 GEHDYSIYDMRHAWVAEIAEVLDR-SVTPAAGKSAATVQVLADSRSNRLVLLGP-PQARARLLRLAQSLDVPSSRSANSR 277
Cdd:TIGR02517 158 GAGSVEVIPLKNASAVDIADVLNKlLGEGGKTDGGGKLSVIAPDRRNNILIRAGsPEALERIKKLISQLDVPASEGGNVR 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 278 VIRLRHGDAKTLAATLGEIGESLhGERGQDGRGSGKRGLL--------------------VRADESLNALVILADPEDVG 337
Cdd:TIGR02517 238 VYYLRNADAEELAKTLQGVFGGG-GNEPGSSSSPGLGGAVnpggsqsaqaassasggsvsGSADKATNSLIITASPQDYK 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 338 LLEDIVRQLDVPRAQLLVEAAIVELSGEIGDALGVQWALRSGHvaGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVG 417
Cdd:TIGR02517 317 NIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTG--GGVNFSTGSPNSGSLLGASASAISLGSAGIGLLVT 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 418 -----------LGSRDFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTS-ASGSSNPFTTVERKD 485
Cdd:TIGR02517 395 sssttsgvggtGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGtGGTNANPFNTYQRKD 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 486 IGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAkAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLL 565
Cdd:TIGR02517 475 VGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTVGSA-ASGPTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLL 553
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 489197383 566 GDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAGLERIS 606
Cdd:TIGR02517 554 GDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
|
|
| PulD |
COG1450 |
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ... |
278-614 |
7.91e-94 |
|
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441059 [Multi-domain] Cd Length: 333 Bit Score: 296.06 E-value: 7.91e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 278 VIRLRHGDAKTLAATLGEIGeslhgergqdgrgSGKRGLLVRADESLNALVILADPEDVGLLEDIVRQLDVPRAQLLVEA 357
Cdd:COG1450 19 VLRALYADAEDLAKVLRSLL-------------GGAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 358 AIVELSGEIGDALGVQWALRSGHvAGGAGFADSGlSIGTLLGAlqagkppAELPDGAIVGL-GSRDFGALVTALSRNSRS 436
Cdd:COG1450 86 KIVEVSLSDLRELGIDWSALGGN-GGGVNFGGTG-SLGSLAAA-------GSLGGGLNLGLlGGGNFGALLNALESNGDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 437 NLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTSASGssNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPT 516
Cdd:COG1450 157 NVLSSPSILTLNNQEAVIKVGQTVPYVTGSTTTSSTG--NPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGS 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 517 ATlAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIV 596
Cdd:COG1450 235 TT-GGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTII 313
|
330
....*....|....*...
gi 489197383 597 RDAAGLERIShGRYRSIQ 614
Cdd:COG1450 314 RDGEDAQALT-EEYDRLR 330
|
|
| IV |
PHA00019 |
phage assembly protein |
47-597 |
2.18e-52 |
|
phage assembly protein
Pssm-ID: 222772 [Multi-domain] Cd Length: 428 Bit Score: 188.10 E-value: 2.18e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 47 TINMKDAEIGDFIEQVSSISGQTFVVDPRVKGRVTVVSqARLSLAEVYQLFLSVLATHGYAVLPQGDQ--ARIVPNMEAR 124
Cdd:PHA00019 25 PVELNNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYS-ADVNPANLPQFFDSVLRANGFDLVAGGPAvvIKQNPNQEDY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 125 QDAAQKTVRDGPgsletrvvqaqqtsvaelipmirplvpahgHLAAVPSANALIVSDrrsnierieAIVRsldragehdy 204
Cdd:PHA00019 104 ADDLRDSRDDVF------------------------------YDNSVPSGAPEVPND---------LIVR---------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 205 sIYDMRHAWVAEIAEVLDRSVTpaaGKSAATVQVLADSRSNRLVLLGPpqararllrlAQSLDVpssrsansrvirlrhg 284
Cdd:PHA00019 135 -TFNINNVRASDLLPLVKIFVK---SNGAPGGSVTDLPGTNSLVVSGS----------ASQLPA---------------- 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 285 daktlaatlgeigeslhgergqdgrgsgkrgllvradeslnalviladpedvglLEDIVRQLDVPRAQLLVEAAIVELSg 364
Cdd:PHA00019 185 ------------------------------------------------------LADFISAIDVPRRQVLIEALIFETS- 209
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 365 eIGDalGVQWALRSGHVAGGA---GFADSGLsiGTLLGAlqAGkppaelpdGAIVGLGSRDFGALVTALSRNSRSNLLST 441
Cdd:PHA00019 210 -LGD--GVDLSFAAGLASGGKvagGFNTARL--TTVLSS--AG--------GSFGIFNGNVLGLSVKALENSSNSRVLSR 274
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATlaa 521
Cdd:PHA00019 275 PRILTLSGQSGYISVGQNVPFVTGRVTGEAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTI--- 351
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489197383 522 kAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVR 597
Cdd:PHA00019 352 -ASDIITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
|
|
| HofQ |
COG4796 |
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ... |
276-599 |
3.72e-49 |
|
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443824 [Multi-domain] Cd Length: 570 Bit Score: 182.36 E-value: 3.72e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 276 SRVIRLRHGDAKTLAATLGEIGESLHGERGQdgrgsgkrgllVRADESLNALVILADPEDVGLLEDIVRQLDVPRAQLLV 355
Cdd:COG4796 258 TEYIQLNYAKASDLAKLLKGQRGSLLSERGS-----------VTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 356 EAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLLGALQAGKP-----PAELPDGAI-VGLGSRDFGALV-- 427
Cdd:COG4796 327 EARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSLNGTTAGTPLLPDGlnvnlPAANPAGSLgLTLAKLGGGRLLdl 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 428 --TALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTgsytTSASGSsnpfTTVERKDIGVTLKVTPHIGEDRMLRLE 505
Cdd:COG4796 407 elSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQE----SSSSGA----TSVEFKEAVLSLEVTPQITPDGRIILD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 506 IEQEISSIAPTATLAAKAVDlvtnKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKR 585
Cdd:COG4796 479 LDVSKDSPGETVAGGVPAID----TKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKR 554
|
330
....*....|....
gi 489197383 586 NLMVFLRPSIVRDA 599
Cdd:COG4796 555 ELLIFITPRIVKDA 568
|
|
| Secretin |
pfam00263 |
Bacterial type II and III secretion system protein; |
429-596 |
4.36e-49 |
|
Bacterial type II and III secretion system protein;
Pssm-ID: 459738 [Multi-domain] Cd Length: 159 Bit Score: 170.01 E-value: 4.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 429 ALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTSASGssnpfTTVERKDIGVTLKVTPHIGEDRMLRLEIEQ 508
Cdd:pfam00263 1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTT-----TTVEFKDAGLSLKVTPQVTPDGTITLKINP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 509 EISSIAPTATlaakAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLM 588
Cdd:pfam00263 76 EVSSPDGNGG----NGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELL 151
|
....*...
gi 489197383 589 VFLRPSIV 596
Cdd:pfam00263 152 IFITPRIV 159
|
|
| IV_pilus_PilQ |
TIGR02515 |
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ... |
276-597 |
1.37e-40 |
|
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]
Pssm-ID: 274173 [Multi-domain] Cd Length: 418 Bit Score: 154.39 E-value: 1.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 276 SRVIRLRHGDAktlaatlGEIGESLHGERGQDGRGSGKRGLLVrADESLNALVILADPEDVGLLEDIVRQLDVPRAQLLV 355
Cdd:TIGR02515 99 TELIQLNYAKA-------SDIAKVLTGVTGGSGGLLSPRGSVT-VDPRTNTLIVTDTPENLARIRKLIAELDIPVRQVLI 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 356 EAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLSIGTLlGALQAGKPPAELPDGAIVGLGSR-------------- 421
Cdd:TIGR02515 171 EARIVEATDSFSRELGVRWGITDKNGNGNGTAGGIGGNNGTT-ATGAGGTGNPPFGDNLNVNLATAttaagisfalgkig 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 422 DFGAL---VTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTgsytTSASGSsnpfTTVERKDIGVTLKVTPHIGE 498
Cdd:TIGR02515 250 SGRLLdleLSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQ----TSSSGA----TSVEFKEAVLSLEVTPQITP 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 499 DRMLRLEIEQEISSIAPTATLAAKAVDLvtNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSS 578
Cdd:TIGR02515 322 DGRIIMDLLVSKDSPGVVAQAGGGVPAI--DKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKT 399
|
330
....*....|....*....
gi 489197383 579 RETRVKRNLMVFLRPSIVR 597
Cdd:TIGR02515 400 GKSDEKSELLIFITPRIVN 418
|
|
| hofQ |
PRK13568 |
DNA uptake porin HofQ; |
243-599 |
5.98e-32 |
|
DNA uptake porin HofQ;
Pssm-ID: 237430 [Multi-domain] Cd Length: 381 Bit Score: 128.31 E-value: 5.98e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 243 RSNRLVLLGPPQARARLLRLAQSLDVPSSRSA--NSRVIRLRHGDAKtlaatlgEIGESLHGERGQ--DGRGSgkrgllV 318
Cdd:PRK13568 49 REGNVLMVFPEQEIQERQQKTKQQAAPQEQMLplANLTLTLQYADAE-------EVADSLQSQRGGllSPRGS------V 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 319 RADESLNALVILADPEDVGLLEDIVRQLDVPRAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAgFADSGLSIGTLL 398
Cdd:PRK13568 116 TADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTISSESLQELGVRWGMGEGKQGNTA-LRINDFNVNLPL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 399 G--ALQAGKPPAELpDGAIVGLGsrdfgalVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSyttSASGSsn 476
Cdd:PRK13568 195 PnpAASAGFHLARL-GGRLLDLE-------LSALEQENQVDIIASPRLFTSHQQTASIKQGTEIPYTVSS---GKSGS-- 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 477 pfTTVERKDIGVTLKVTPHI-GEDRM-LRLEIEQEIssiaPTATL-AAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQD 553
Cdd:PRK13568 262 --TSIEFKEAVLGMEVTPKIlRNGRItLKLKISQNM----PGRTIkRGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQ 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 489197383 554 DLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDA 599
Cdd:PRK13568 336 QKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLISAD 381
|
|
| pilus_MshL |
TIGR02519 |
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ... |
327-596 |
9.44e-32 |
|
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]
Pssm-ID: 274176 [Multi-domain] Cd Length: 290 Bit Score: 125.57 E-value: 9.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 327 LVILADPEDVGLLEDIVRQL-DVPRAQLLVEAAIVELSGEIGDALGVQWALRSGHVAG---GAGFADSGLSIGTLLGALQ 402
Cdd:TIGR02519 10 LTVTATPAQIRRVEEYLESLqERIHRQVLIEAKILEVTLSDNHQQGIDWSNFNGSGLArykALGAANSNDSSGNQFSSGL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 403 AGKPPAELPDGAIVGlgsRDFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTG-SYTTSASGS---SNPF 478
Cdd:TIGR02519 90 GFLDNIGLPTGVNSG---FGFDSIINFLATFGDTKVLSNPKVMALNNQPAVISVGDNIRYVTEeSSTGTTGGTtstASSD 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 479 TTVERKDIGVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLV------TNKRSIKSTVLADDGQVIVLGGLIQ 552
Cdd:TIGR02519 167 TRVDSVFSGIVLGVTPQISDDGKVILNVHPSISEVKPQSIDLNPVGNGAevalpeISVKEMSSVLRVKDGDTVVLGGLID 246
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489197383 553 DDLQRSDSRVPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIV 596
Cdd:TIGR02519 247 KKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
|
|
| CpaC |
COG4964 |
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ... |
340-597 |
1.87e-29 |
|
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443990 [Multi-domain] Cd Length: 456 Bit Score: 122.29 E-value: 1.87e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 340 EDIVRQLDVPRA-QLLVEAAIVELSGEIGDALGVQWALrsghvAGGAGFADSGLSIGTLLGALQAGKPPAELpdgAIVGL 418
Cdd:COG4964 163 GKVINLLTVGGPqQVMLKVRVAEVSRSVLKQLGINWSG-----LGSSGGFSFGLLTGGLLSGLLGGATAGAF---SGFGF 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 419 GSRDFGALVTALSRNS------------RSNllstpslltldnQKAEILVGQNVPFQTGSyttsasgsSNPFTTVERKDI 486
Cdd:COG4964 235 GNASISATLDALEQNGlarvlaepnltaLSG------------ETASFLAGGEFPIPVAQ--------GDGTITVEYKEF 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 487 GVTLKVTPHIGEDRMLRLEIEQEISSIAPTATLAAKAVDLVT-NKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLL 565
Cdd:COG4964 295 GVSLNFTPTVLSNGRISLKVAPEVSELDPSNAVTLNGITIPGlTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGL 374
|
250 260 270
....*....|....*....|....*....|..
gi 489197383 566 GDIPGVGRLFRSSRETRVKRNLMVFLRPSIVR 597
Cdd:COG4964 375 GDIPILGALFRSRSFQRNETELVIIVTPYLVK 406
|
|
| type_III_yscC |
TIGR02516 |
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ... |
209-598 |
1.37e-27 |
|
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274174 [Multi-domain] Cd Length: 462 Bit Score: 117.09 E-value: 1.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 209 MRHAWVAEIAEVLDRSVTpaAGKSAAtvqVLADSRSNRLVLLGPPQARARLLRLAQSLD-VPSSRSANS---RVIRLRHG 284
Cdd:TIGR02516 82 PRPLSANELKKALRRSGL--YDPRFP---WRGDPEEGTVYVSGPPAYIDLVRNAATALEkQDQGRAGNRqvvKVFPLKYA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 285 ----------DAKTLAATLGEIGESLHGERGQDgRGSGKRGLLVR--ADESLNALVILADPEDVGLLEDIVRQLDVPRAQ 352
Cdd:TIGR02516 157 sasdrtynyrDQKVTIPGVATILRRLLSGGRQG-AGGGRASASPKisADPRTNAVLIRDRPERMAIYEQLIQQLDVPPRL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 353 LLVEAAIVELSGEIGDALGVQWalrSGHVAGGAGFADSGLSIGTLLGALQagkppaelpdGAIVGLGSRDFGALVTALSR 432
Cdd:TIGR02516 236 IEISAWIIDIDASDLSQLGVDW---QATLGAGDRQTGFNVSAGAGLGATG----------SSIVTSDGDYFMARVNALEQ 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 433 NSRSNLLSTPSLLTLDNQKAeiLVGQNVPFqtgsYTTsASGssnpFTTVERKDI--GVTLKVTPHIGEDRMLRLEIEQEI 510
Cdd:TIGR02516 303 TGKAKIVSRPSVLTLENVQA--VLDNNRTF----YVK-VSG----ERVADLESVtaGTSLRVTPRVIGDEGAQRQIKLNV 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 511 S-SIAPTATLAAKAVD-LVTNKRSIKSTV-LADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSSREtRVKRNL 587
Cdd:TIGR02516 372 DiEDGQQKTDGTSTVDaLPEIKRTEINTQaRVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSK-EKSRVV 450
|
410
....*....|..
gi 489197383 588 MVFL-RPSIVRD 598
Cdd:TIGR02516 451 RLFLiTPKIVRD 462
|
|
| hofQ |
PRK10560 |
outer membrane porin HofQ; Provisional |
254-596 |
6.68e-22 |
|
outer membrane porin HofQ; Provisional
Pssm-ID: 182549 [Multi-domain] Cd Length: 386 Bit Score: 98.74 E-value: 6.68e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 254 QARARLLRLAQSLDVPssrsANSRVIRLRHGDAKTLAATlgeigeslhGERGQDGRGSgkrgllVRADESLNALVILADP 333
Cdd:PRK10560 75 IARQEAEQARAQANLP----LENRSITLQYADAGELAKA---------GEKLLSAKGS------MTVDKRTNRLLLRDNK 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 334 EDVGLLEDIVRQLDVPRAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGfadsglSIGTLLGALQAGKPPAELpdG 413
Cdd:PRK10560 136 TALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLADAQQAGGVG------QVTTLGSDLSVATATTRV--G 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 414 AIVG-LGSRDFGALVTALSRNSRSNLLSTPSLLTLDNQKAEILVGQNVPFQTGSYTTSAsgssnpfTTVERKDIGVTLKV 492
Cdd:PRK10560 208 FNIGrINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA-------TSVEFKEAVLGMEV 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 493 TPHIGEDRMLRLEIEqeISSIAPTATLA-AKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSRVPLLGDIPGV 571
Cdd:PRK10560 281 TPTVLQKGRIRLKLH--ISQNVPGQVLQqADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWL 358
|
330 340
....*....|....*....|....*
gi 489197383 572 GRLFRSSRETRVKRNLMVFLRPSIV 596
Cdd:PRK10560 359 GQLFRHDGKEDERRELVVFITPRLV 383
|
|
| PRK15346 |
PRK15346 |
EscC/YscC/HrcC family type III secretion system outer membrane ring protein; |
320-578 |
4.25e-13 |
|
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
Pssm-ID: 237950 [Multi-domain] Cd Length: 499 Bit Score: 72.42 E-value: 4.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 320 ADESLNALVILADPEDVGLLEDIVRQLDVPRAQLLVEAAIVEL-SGEIgDALGVQWA----LRSGHVAGGAGFADSGLS- 393
Cdd:PRK15346 240 ADPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVdAGDI-NQLGIDWSasasLGGGKISFNSGFADGNASg 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 394 IGTLLGalqagkppaelpdgaivglGSRDFGALVTALSRNSRSNLLSTPSLLTLDNQKAeiLVGQNVPFqtgsYTtSASG 473
Cdd:PRK15346 319 FSTVIS-------------------NTGNFMVRLNALEKNSKAKILSQPSVVTLNNIQA--VLDKNVTF----YT-KLQG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 474 SSNPftTVERKDIGVTLKVTPHIGEDR-----MLRLEIE--QEISSIAPTATLAAkavdlVTNKR-SIKSTVLAddGQVI 545
Cdd:PRK15346 373 EKVA--KLESITTGSLLRVTPRLIDDNgtqkvMLNLNIQdgQQSATQSETDPLPE-----VQNSEiATQATLKA--GQSL 443
|
250 260 270
....*....|....*....|....*....|...
gi 489197383 546 VLGGLIQDDLQRSDSRVPLLGDIPGVGRLFRSS 578
Cdd:PRK15346 444 LLGGFIQDKQIESQNKIPLLGDIPLIGGLFRST 476
|
|
| Secretin_N |
pfam03958 |
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ... |
276-352 |
2.66e-10 |
|
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.
Pssm-ID: 461109 [Multi-domain] Cd Length: 68 Bit Score: 56.84 E-value: 2.66e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489197383 276 SRVIRLRHGDAKTLAATLGEIGEslhGERGQDGRGSgkrgllVRADESLNALVILADPEDVGLLEDIVRQLDVPRAQ 352
Cdd:pfam03958 1 TRVIPLKYASAEDLASALRSLLG---GSGLLSKRGS------VVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
|
|
| PRK15339 |
PRK15339 |
EscC/YscC/HrcC family type III secretion system outer membrane ring protein; |
261-591 |
7.06e-10 |
|
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
Pssm-ID: 237948 [Multi-domain] Cd Length: 559 Bit Score: 62.48 E-value: 7.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 261 RLAQSLDVPSSRSANSRVIRLrhgdaKTLAATlGEIGESLHGERGQDGRGSGKRGLL-----VRADESLNALVILADPED 335
Cdd:PRK15339 212 RLLNGEEQPSGRQASSEPPAM-----PPFSAN-GEKGKAANYAGGMSLQEALKQNAAagdikIIAYPDTNSLLVKGTAEQ 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 336 VGLLEDIVRQLDVPRAQLLVEAAIVELSGEIGDALGVQWalrSGhvaggagfadsGLSIGTLLGAlqagkppaELPDGAI 415
Cdd:PRK15339 286 VHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGVNW---SG-----------SITIGDKLGV--------SLNQSSI 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 416 VGLGSRDFGALVTALSRNSRSNLLStpslltldnqKAEILVGQNVP--FQTG-SYTTSASGSSNpfTTVERKDIGVTLKV 492
Cdd:PRK15339 344 STLDGSRFIAAVMALEQKKKANVVS----------RPVVLTQENIPaiFDNNrTFYTKLVGERN--VALEHVTYGTMISV 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489197383 493 TPHIGED----RMLRLEIEQEISSIAPTATlaaKAVDLVTNKRSIKSTVL-ADDGQVIVLGGLIQDDLQRSDSRVPLLGD 567
Cdd:PRK15339 412 LPRFSADgqieMSLDIEDGNEKTPQSDTTT---SVDALPEVGRTLISTIArVPQGKSLLIGGYTRDANTDEVQSIPFLGS 488
|
330 340
....*....|....*....|....*.
gi 489197383 568 IPGVGRLFR--SSRETRVKRnlmVFL 591
Cdd:PRK15339 489 LPLIGSLFRysSKNKSNIVR---VFL 511
|
|
| Secretin_N |
pfam03958 |
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ... |
206-272 |
9.08e-09 |
|
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.
Pssm-ID: 461109 [Multi-domain] Cd Length: 68 Bit Score: 52.60 E-value: 9.08e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489197383 206 IYDMRHAWVAEIAEVLdRSVTPAAGKSAATVQVLADSRSNRLVLLGPPQARARLLRLAQSLDVPSSR 272
Cdd:pfam03958 3 VIPLKYASAEDLASAL-RSLLGGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
|
|
| Secretin_N |
pfam03958 |
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ... |
141-201 |
1.39e-07 |
|
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.
Pssm-ID: 461109 [Multi-domain] Cd Length: 68 Bit Score: 49.14 E-value: 1.39e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489197383 141 TRVVQAQQTSVAELIPMIRPLVPAH------GHLAAVPSANALIVSDRRSNIERIEAIVRSLDRAGE 201
Cdd:pfam03958 1 TRVIPLKYASAEDLASALRSLLGGSgllskrGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRA 67
|
|
|