|
Name |
Accession |
Description |
Interval |
E-value |
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
5-250 |
4.29e-110 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 317.02 E-value: 4.29e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 5 SITLSNVHLHYAASAFKERSVKTLVNallsmrRSAGANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYP 84
Cdd:COG1134 4 MIEVENVSKSYRLYHEPSRSLKELLL------RRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 85 ISSGTLKVTGTVRSLFDIGLGFEPDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAF 164
Cdd:COG1134 78 PTSGRVEVNGRVSALLELGAGFHPELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 165 AISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAISFY 244
Cdd:COG1134 158 AVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAAY 237
|
....*.
gi 489053489 245 NSGMGA 250
Cdd:COG1134 238 EALLAG 243
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
6-235 |
9.54e-106 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 305.23 E-value: 9.54e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 6 ITLSNVHLHYAASAFKERSVKTLvnallsMRRSAGANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPI 85
Cdd:cd03220 1 IELENVSKSYPTYKGGSSSLKKL------GILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 86 SSGTLKVTGTVRSLFDIGLGFEPDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFA 165
Cdd:cd03220 75 DSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 166 ISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03220 155 IATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
47-245 |
6.56e-46 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 160.83 E-value: 6.56e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrSLFDIGLGFEPDATGRENILYRGLLLGLT 126
Cdd:PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-ALIAISSGLNGQLTGIENIELKGLMMGLT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 127 PRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIM 206
Cdd:PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI 196
|
170 180 190
....*....|....*....|....*....|....*....
gi 489053489 207 VLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAISFYN 245
Cdd:PRK13545 197 FFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
45-239 |
1.84e-41 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 141.74 E-value: 1.84e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--------TVRSLfdIG-----LGFEPDAT 111
Cdd:COG1131 12 DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGedvardpaEVRRR--IGyvpqePALYPDLT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIgAG-DAAFMT 190
Cdd:COG1131 90 VRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPT-SGlDPEARR 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489053489 191 KAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG1131 169 ELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDE 217
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
44-244 |
2.68e-40 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 139.57 E-value: 2.68e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrSLFDIGLGFEPDATGRENILYRGLLL 123
Cdd:PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV-SVIAISAGLSGQLTGIENIEFKMLCM 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 124 GLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKA 203
Cdd:PRK13546 114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN 193
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489053489 204 EIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAISFY 244
Cdd:PRK13546 194 KTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
44-244 |
1.31e-36 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 128.99 E-value: 1.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFDI----GLGFE-PD-----A 110
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGkdiTKKNLRELrrkvGLVFQnPDdqlfaP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 TGRENILYrGLL-LGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIgAG-DAaf 188
Cdd:COG1122 92 TVEEDVAF-GPEnLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPT-AGlDP-- 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 189 mtKAKARIMNMVEKAE----IMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAISFY 244
Cdd:COG1122 168 --RGRRELLELLKRLNkegkTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDY 225
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
45-239 |
1.25e-31 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 116.50 E-value: 1.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIG----LGFEPDA-------TGR 113
Cdd:COG4555 13 KVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREarrqIGVLPDErglydrlTVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAK 193
Cdd:COG4555 93 ENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVMARRLLR 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489053489 194 ARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG4555 173 EILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDE 218
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
40-232 |
2.99e-31 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 114.88 E-value: 2.99e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 40 GANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT--VRSLFDIGLGFEPDA-----TG 112
Cdd:cd03293 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEpvTGPGPDRGYVFQQDAllpwlTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENILYrGLLL-GLTPRFMREIEDEIIEFADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafMT 190
Cdd:cd03293 91 LDNVAL-GLELqGVPKAEARERAEELLELVGLSGFENaYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA--LT 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489053489 191 KAKAR--IMNMVEKAEI-MVLASHDLANVRQLCTRALVFKA--GTIA 232
Cdd:cd03293 167 REQLQeeLLDIWRETGKtVLLVTHDIDEAVFLADRVVVLSArpGRIV 213
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
49-179 |
4.37e-31 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 112.36 E-value: 4.37e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLK-----VTGTVRSLFDIGLG-------FEPDATGRENI 116
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILldgqdLTDDERKSLRKEIGyvfqdpqLFPRLTVRENL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 117 LYRGLLLGLTPRFMREIEDEIIEFADLGDF----IDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLadrpVGERPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
48-230 |
5.85e-31 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 113.72 E-value: 5.85e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFD----IGLGF-EPD-----ATGRE 114
Cdd:cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGkdlTKLSLKElrrkVGLVFqNPDdqffgPTVEE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafmtKAKA 194
Cdd:cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP----AGRR 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489053489 195 RIMNMVE--KAEIM--VLASHDLANVRQLCTRALVFKAGT 230
Cdd:cd03225 172 ELLELLKklKAEGKtiIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
47-231 |
2.27e-30 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 112.60 E-value: 2.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT--VRSLFDI--GLGFEP--DA-----TGREN 115
Cdd:cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYsiRTDRKAArqSLGYCPqfDAlfdelTVREH 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 116 ILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfmtkAKAR 195
Cdd:cd03263 96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA----SRRA 171
|
170 180 190
....*....|....*....|....*....|....*....
gi 489053489 196 IMNMVEKAE---IMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03263 172 IWDLILEVRkgrSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
45-235 |
6.98e-29 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 108.46 E-value: 6.98e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-----------VRSLFDIGlGFEPDATGR 113
Cdd:cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKsyqkniealrrIGALIEAP-GFYPNLTAR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYRGLLLGLTprfmREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAK 193
Cdd:cd03268 91 ENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489053489 194 ARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03268 167 ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
45-239 |
8.24e-29 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 108.61 E-value: 8.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--------TVRSlfDIGLGF-----EPDAT 111
Cdd:cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGhdvvreprEVRR--RIGIVFqdlsvDDELT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTK 191
Cdd:cd03265 90 GWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAH 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489053489 192 AKARIMNMVEKAEIMV-LASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:cd03265 170 VWEYIEKLKEEFGMTIlLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
48-242 |
3.09e-28 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 107.48 E-value: 3.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT--VRSLFDIG-----LGFEPD--ATGRENIL- 117
Cdd:COG1121 21 VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKppRRARRRIGyvpqrAEVDWDfpITVRDVVLm 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 ----YRGLLLGLTPRfMREIEDEIIEFADLGDFIDYPIKTYSAGMQ--VRLAFAIstAVDGDILLLDEVIGAGDAafmtK 191
Cdd:COG1121 101 grygRRGLFRRPSRA-DREAVDEALERVGLEDLADRPIGELSGGQQqrVLLARAL--AQDPDLLLLDEPFAGVDA----A 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 192 AKARIMNMVE--KAE--IMVLASHDLANVRQLCTRALVFkAGTIAFDGRVEDAIS 242
Cdd:COG1121 174 TEEALYELLRelRREgkTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLT 227
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
46-239 |
5.08e-28 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 106.75 E-value: 5.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLK-----VTGT---VRSLFDIGLGFE-----PDATG 112
Cdd:cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLfdgedITGLpphEIARLGIGRTFQiprlfPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENIL-----YRGLLLGLTPRFMREIE-----DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIg 182
Cdd:cd03219 93 LENVMvaaqaRTGSGLLLARARREEREareraEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA- 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 183 AGdaafmtkakariMNMVEKAEIM-------------VLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:cd03219 172 AG------------LNPEETEELAelirelrergitvLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
45-231 |
3.80e-27 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 102.86 E-value: 3.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvrslFDIGlgfEPDATGRENILY----RG 120
Cdd:cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG-----KDIK---KEPEEVKRRIGYlpeePS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 121 LLLGLTPRfmreiedEIIEfadlgdfidypiktYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMV 200
Cdd:cd03230 84 LYENLTVR-------ENLK--------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
|
170 180 190
....*....|....*....|....*....|.
gi 489053489 201 EKAEIMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03230 143 KEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
44-239 |
1.04e-26 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 107.68 E-value: 1.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLF---------DIGLGF-EPDA-- 110
Cdd:COG1123 276 GGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKdLTKLSrrslrelrrRVQMVFqDPYSsl 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 ----TGREnILYRGL-LLGLTPRfmREIEDEIIEFADL----GDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVI 181
Cdd:COG1123 356 nprmTVGD-IIAEPLrLHGLLSR--AERRERVAELLERvglpPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPT 432
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 182 GAGDAAfmtkAKARIMNMVE--KAEI---MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG1123 433 SALDVS----VQAQILNLLRdlQRELgltYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEE 491
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
40-231 |
1.74e-26 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 102.18 E-value: 1.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 40 GANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV--------RSLF---DIGLGFE- 107
Cdd:cd03255 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDisklsekeLAAFrrrHIGFVFQs 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 ----PDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGA 183
Cdd:cd03255 91 fnllPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGN 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489053489 184 GDaafmTKAKARIMN----MVEKAEI-MVLASHDLaNVRQLCTRALVFKAGTI 231
Cdd:cd03255 171 LD----SETGKEVMEllreLNKEAGTtIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
45-232 |
3.21e-26 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 102.48 E-value: 3.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV--RSLFDIGLGFE-----PDATGRENIL 117
Cdd:COG1116 23 GVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPvtGPGPDRGVVFQepallPWLTVLDNVA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 YrGL-LLGLTPRFMREIEDEIIEFADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafMTKAKAR 195
Cdd:COG1116 103 L-GLeLRGVPKAERRERARELLELVGLAGFEDaYP-HQLSGGMRQRVAIARALANDPEVLLMDEPFGALDA--LTRERLQ 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489053489 196 --IMNMVEKAEI-MVLASHDLAN-VRqLCTRALVFKA--GTIA 232
Cdd:COG1116 179 deLLRLWQETGKtVLFVTHDVDEaVF-LADRVVVLSArpGRIV 220
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
49-219 |
9.93e-26 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 99.86 E-value: 9.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV---------RSLFDIG--LGFEPDATGRENIL 117
Cdd:COG4133 18 FSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPirdaredyrRRLAYLGhaDGLKPELTVRENLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 YRGLLLGLTPRfmREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIM 197
Cdd:COG4133 98 FWAALYGLRAD--REAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIA 175
|
170 180
....*....|....*....|....*
gi 489053489 198 NMVEKAEIMVLASHD---LANVRQL 219
Cdd:COG4133 176 AHLARGGAVLLTTHQpleLAAARVL 200
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
45-232 |
1.75e-25 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 99.52 E-value: 1.75e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTL-----KVTGTVRSLFDIGLGFE-----PDATGRE 114
Cdd:cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIlidgrDVTGVPPERRNIGMVFQdyalfPHLTVAE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NILYrGLLLGLTPRFM-REIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAK 193
Cdd:cd03259 92 NIAF-GLKLRGVPKAEiRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489053489 194 ARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIA 232
Cdd:cd03259 171 EELKELQRELGItTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
43-230 |
7.92e-25 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 96.16 E-value: 7.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 43 IEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvrslfdIGLGFEPDATGRENILYRGLL 122
Cdd:cd00267 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-------KDIAKLPLEELRRRIGYVPQL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 lgltprfmreiedeiiefadlgdfidypiktySAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEK 202
Cdd:cd00267 82 --------------------------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129
|
170 180
....*....|....*....|....*...
gi 489053489 203 AEIMVLASHDLANVRQLCTRALVFKAGT 230
Cdd:cd00267 130 GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
49-242 |
9.21e-25 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 98.58 E-value: 9.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvRSLFDIG-------LGF-------EPDATGRE 114
Cdd:COG1120 17 LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDG--RDLASLSrrelarrIAYvpqeppaPFGLTVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NIL-----YRGLLLGLTPRfMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFm 189
Cdd:COG1120 95 LVAlgrypHLGLFGRPSAE-DREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAH- 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 190 tkaKARIMNMVE-------KAEIMVLasHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:COG1120 173 ---QLEVLELLRrlarergRTVVMVL--HDLNLAARYADRLVLLKDGRIVAQGPPEEVLT 227
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
44-235 |
9.93e-25 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 98.17 E-value: 9.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV------RSLFDIGLGFepdatGRENIL 117
Cdd:cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVpwkrrkKFLRRIGVVF-----GQKTQL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 YRGLLLGLTPRFMREIE-----------DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE-VIGAgD 185
Cdd:cd03267 107 WWDLPVIDSFYLLAAIYdlpparfkkrlDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEpTIGL-D 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 186 AAfmtkAKARIMNMV-----EKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03267 186 VV----AQENIRNFLkeynrERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
44-242 |
1.11e-24 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 101.90 E-value: 1.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPIS---SGTLKVTGT--------VRSLfDIGLGF-EPDA- 110
Cdd:COG1123 17 GDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRdllelseaLRGR-RIGMVFqDPMTq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 ----TGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDA 186
Cdd:COG1123 96 lnpvTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTALDV 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 187 AFMTKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:COG1123 176 TTQAEILDLLRELQRERGTtVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILA 232
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
47-234 |
3.54e-24 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 96.06 E-value: 3.54e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--TVRSLFDIG-----LGFEPD--ATGRENIL 117
Cdd:cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGkpLEKERKRIGyvpqrRSIDRDfpISVRDVVL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 -----YRGLLLGLTPRFMREIeDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKA 192
Cdd:cd03235 93 mglygHKGLFRRLSKADKAKV-DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489053489 193 KARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFD 234
Cdd:cd03235 172 YELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
44-239 |
3.80e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 98.24 E-value: 3.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAG-LYPiSSGTLKVTGTV------RSLFDIGL------------ 104
Cdd:COG4586 33 REVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGiLVP-TSGEVRVLGYVpfkrrkEFARRIGVvfgqrsqlwwdl 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 105 ----GFE--------PDATGRENIlyrglllgltprfmreieDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDG 172
Cdd:COG4586 112 paidSFRllkaiyriPDAEYKKRL------------------DELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRP 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489053489 173 DILLLDE-VIGAgDAAfmtkAKARI------MNMVEKAEIMvLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG4586 174 KILFLDEpTIGL-DVV----SKEAIreflkeYNRERGTTIL-LTSHDMDDIEALCDRVIVIDHGRIIYDGSLEE 241
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
45-239 |
7.89e-24 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 95.19 E-value: 7.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFDI---GLGFEP-------DAT 111
Cdd:cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGrdiTGLPPHERaraGIGYVPegrrifpELT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENilyrgLLLGLTPRFMREIE---DEIIE-FADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEvIGAGDAA 187
Cdd:cd03224 92 VEEN-----LLLGAYARRRAKRKarlERVYElFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE-PSEGLAP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489053489 188 FMTKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:cd03224 166 KIVEEIFEAIRELRDEGVtILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
48-229 |
1.42e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 94.27 E-value: 1.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD---IGL-----GFEPDATGRENILYR 119
Cdd:cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAArnrIGYlpeerGLYPKMKVIDQLVYL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 120 GLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNM 199
Cdd:cd03269 95 AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL 174
|
170 180 190
....*....|....*....|....*....|
gi 489053489 200 VEKAEIMVLASHDLANVRQLCTRALVFKAG 229
Cdd:cd03269 175 ARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
47-235 |
3.43e-23 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 93.41 E-value: 3.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGeRVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--------TVRSLfdIGL-----GFEPDATGR 113
Cdd:cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGqdvlkqpqKLRRR--IGYlpqefGVYPNFTVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfmtkAK 193
Cdd:cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE----ER 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489053489 194 ARIMNM-VEKAE--IMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03264 167 IRFRNLlSELGEdrIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
46-239 |
4.63e-23 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 93.95 E-value: 4.63e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTL-----KVTGT----------VRS-----LFdiglg 105
Cdd:COG0411 17 LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRIlfdgrDITGLpphriarlgiARTfqnprLF----- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 106 fePDATGRENIL----------YRGLLLGLTPRFMREIE-----DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAV 170
Cdd:COG0411 92 --PELTVLENVLvaaharlgrgLLAALLRLPRARREEREareraEELLERVGLADRADEPAGNLSYGQQRRLEIARALAT 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 171 DGDILLLDEVIgAGdaafmtkakariMNMVEKAEIM--------------VLASHDLANVRQLCTRALVFKAGTIAFDGR 236
Cdd:COG0411 170 EPKLLLLDEPA-AG------------LNPEETEELAelirrlrdergitiLLIEHDMDLVMGLADRIVVLDFGRVIAEGT 236
|
...
gi 489053489 237 VED 239
Cdd:COG0411 237 PAE 239
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
37-235 |
5.67e-23 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 93.20 E-value: 5.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 37 RSAGANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--TVRSLFDI--GLGFEPDATG 112
Cdd:cd03266 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGfdVVKEPAEArrRLGFVSDSTG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 -------RENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGD 185
Cdd:cd03266 89 lydrltaRENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489053489 186 AAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
46-240 |
1.21e-22 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 92.57 E-value: 1.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD----------IGLGF-EPDA---- 110
Cdd:cd03257 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSrrlrkirrkeIQMVFqDPMSslnp 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 --TGRENIL--YRGLLLGLTPRFMREIEDEI-IEFADLGDFID-YPIKtYSAGMQVRLAFAISTAVDGDILLLDEVIGAG 184
Cdd:cd03257 98 rmTIGEQIAepLRIHGKLSKKEARKEAVLLLlVGVGLPEEVLNrYPHE-LSGGQRQRVAIARALALNPKLLIADEPTSAL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 185 DAAfmtkAKARIMNMVE--KAEI---MVLASHDLANVRQLCTRALVFKAGTIafdgrVEDA 240
Cdd:cd03257 177 DVS----VQAQILDLLKklQEELgltLLFITHDLGVVAKIADRVAVMYAGKI-----VEEG 228
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
40-239 |
6.23e-22 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 90.72 E-value: 6.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 40 GANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF----------DIGLGFE-- 107
Cdd:cd03258 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLsgkelrkarrRIGMIFQhf 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 ---PDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGA 183
Cdd:cd03258 92 nllSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADaYP-AQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 184 GDAAFMTKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:cd03258 171 LDPETTQSILALLRDINRELGLtIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
45-235 |
1.29e-21 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 89.28 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHA-LKGISVDIA---RGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrsLFD-------------IGLGFE 107
Cdd:cd03297 5 DIEKrLPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV--LFDsrkkinlppqqrkIGLVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 -----PDATGRENILYRglLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIG 182
Cdd:cd03297 83 qyalfPHLNVRENLAFG--LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 183 AGDAA-------FMTKAKARiMNMVekaeiMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03297 161 ALDRAlrlqllpELKQIKKN-LNIP-----VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-241 |
1.29e-21 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 91.82 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 2 IQPSITLSNVHLHYAASAFKERSVKTLVNALLSMRRSAGANIedihALKGISVDIARGERVALIGHNGAGKSTFLKTIAG 81
Cdd:PRK13536 14 LELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 82 LYPISSGTLKVTGT--------------VRSLFDiglGFEPDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFI 147
Cdd:PRK13536 90 MTSPDAGKITVLGVpvpararlararigVVPQFD---NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 148 DYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFK 227
Cdd:PRK13536 167 DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE 246
|
250
....*....|....
gi 489053489 228 AGTIAFDGRVEDAI 241
Cdd:PRK13536 247 AGRKIAEGRPHALI 260
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
49-241 |
3.80e-21 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 88.99 E-value: 3.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAG-LYPISSGTLKVTGTVR---SLFD----IGL-------GFEPDATGR 113
Cdd:COG1119 19 LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGdLPPTYGNDVRLFGERRggeDVWElrkrIGLvspalqlRFPRDETVL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILyRGLL--LGLTPRF---MREIEDEIIEFADLGDFIDYPIKTYSAGMQVR--LAFAISTavDGDILLLDEViGAG-D 185
Cdd:COG1119 99 DVVL-SGFFdsIGLYREPtdeQRERARELLELLGLAHLADRPFGTLSQGEQRRvlIARALVK--DPELLILDEP-TAGlD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 186 AAfmtkAKARIMNMVEK-----AEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAI 241
Cdd:COG1119 175 LG----ARELLLALLDKlaaegAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVL 231
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
45-230 |
1.13e-20 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 86.09 E-value: 1.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvrslfDIGLGFEPDATGRENIlyrGLLL- 123
Cdd:cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE-----DLTDLEDELPPLRRRI---GMVFq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 124 --GLTPRFmreiedeiiefaDLGDFIDYPIktySAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVE 201
Cdd:cd03229 84 dfALFPHL------------TVLENIALGL---SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA 148
|
170 180 190
....*....|....*....|....*....|
gi 489053489 202 KAEI-MVLASHDLANVRQLCTRALVFKAGT 230
Cdd:cd03229 149 QLGItVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
47-235 |
1.77e-20 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 86.85 E-value: 1.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT------------VRSlfDIGLGF-EPDATGR 113
Cdd:cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTdinklkgkalrqLRR--QIGMIFqQFNLIER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ----ENIL-----YRGL---LLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVI 181
Cdd:cd03256 93 lsvlENVLsgrlgRRSTwrsLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489053489 182 GAGDAafmtKAKARIMNMVEKA----EIMVLAS-HDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03256 173 ASLDP----ASSRQVMDLLKRInreeGITVIVSlHQVDLAREYADRIVGLKDGRIVFDG 227
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
45-238 |
2.87e-20 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 86.08 E-value: 2.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTlKVTGTVrsLFD-----------------IGLGFE 107
Cdd:cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-PDEGEV--LLDgkdiydldvdvlelrrrVGMVFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 P----DATGRENILYrGL-LLGLTPR-FMREIEDEIIEFADLGDFIDYPIKTY--SAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:cd03260 89 KpnpfPGSIYDNVAY-GLrLHGIKLKeELDERVEEALRKAALWDEVKDRLHALglSGGQQQRLCLARALANEPEVLLLDE 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489053489 180 VIGAGDAAfmtkAKARIMNMVE--KAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDGRVE 238
Cdd:cd03260 168 PTSALDPI----STAKIEELIAelKKEYtIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
49-235 |
3.50e-20 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 84.79 E-value: 3.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLfdiglgfepdaTGREnilyRGLLLGLTP 127
Cdd:cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKdLASL-----------SPKE----LARKIAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 128 RFMREIedeiiefaDLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMV 207
Cdd:cd03214 80 QALELL--------GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV 151
|
170 180
....*....|....*....|....*....
gi 489053489 208 LAS-HDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03214 152 VMVlHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
49-239 |
6.61e-20 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 85.42 E-value: 6.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT------------VRS----------LFDiglgf 106
Cdd:COG1127 21 LDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQditglsekelyeLRRrigmlfqggaLFD----- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 107 epDATGRENI---LYRglLLGLTPRFMREIEDEIIEFADLGDFID-YP--IktySAGMQVRLAFAISTAVDGDILLLDEV 180
Cdd:COG1127 96 --SLTVFENVafpLRE--HTDLSEAEIRELVLEKLELVGLPGAADkMPseL---SGGMRKRVALARALALDPEILLYDEP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 181 ------IGAGDAAFMtkakarIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG1127 169 tagldpITSAVIDEL------IRELRDELGLtSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEE 228
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
47-239 |
6.77e-20 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 85.97 E-value: 6.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV---------RSL-FDIGLGFE-PDA----- 110
Cdd:TIGR04521 19 KALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDitakkkkklKDLrKKVGLVFQfPEHqlfee 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 TGRENILYRGLLLGLTPrfmREIEDEIIEFADL-GdfIDYPIKT-----YSAGMQVRLAFAISTAVDGDILLLDEVIgAG 184
Cdd:TIGR04521 99 TVYKDIAFGPKNLGLSE---EEAEERVKEALELvG--LDEEYLErspfeLSGGQMRRVAIAGVLAMEPEVLILDEPT-AG 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 185 -DAafmtKAKARIMNMV-----EKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:TIGR04521 173 lDP----KGRKEILDLFkrlhkEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPRE 229
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
44-214 |
6.94e-20 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 84.01 E-value: 6.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV-----RSLFD----IGLGFE-PD---- 109
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPldysrKGLLErrqrVGLVFQdPDdqlf 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 -ATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAF 188
Cdd:TIGR01166 83 aADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162
|
170 180
....*....|....*....|....*.
gi 489053489 189 MTKAKARIMNMVEKAEIMVLASHDLA 214
Cdd:TIGR01166 163 REQMLAILRRLRAEGMTVVISTHDVD 188
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
49-242 |
9.59e-20 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 84.69 E-value: 9.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF-----DIGLGFE-----PDATGRENILY 118
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLppekrDISYVPQnyalfPHMTVYKNIAY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 119 rGLLLGLTPRfmREIE---DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDaafmTKAKAR 195
Cdd:cd03299 95 -GLKKRKVDK--KEIErkvLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALD----VRTKEK 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489053489 196 IMNMVEKA----EIMVL-ASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:cd03299 168 LREELKKIrkefGVTVLhVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
44-235 |
1.45e-19 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 84.79 E-value: 1.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKV----TGTVRSLFDI----GLGFE-PD----- 109
Cdd:TIGR04520 13 SEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVdgldTLDEENLWEIrkkvGMVFQnPDnqfvg 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 -------ATGRENilyrgllLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIG 182
Cdd:TIGR04520 93 atveddvAFGLEN-------LGVPREEMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDIIILDEATS 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 183 AGDAafmtKAKARIMNMV-----EKAEIMVLASHDLANVRQlCTRALVFKAGTIAFDG 235
Cdd:TIGR04520 166 MLDP----KGRKEVLETIrklnkEEGITVISITHDMEEAVL-ADRVIVMNKGKIVAEG 218
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
45-236 |
2.90e-19 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 83.18 E-value: 2.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSL---------FDIGLGFE-----PD 109
Cdd:COG2884 14 GREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQdLSRLkrreipylrRRIGVVFQdfrllPD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfm 189
Cdd:COG2884 94 RTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNLDPE-- 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489053489 190 tkAKARIMNMVE---KAEIMVL-ASHDLANVRQLCTRALVFKAGTIAFDGR 236
Cdd:COG2884 172 --TSWEIMELLEeinRRGTTVLiATHDLELVDRMPKRVLELEDGRLVRDEA 220
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
44-238 |
3.05e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 84.40 E-value: 3.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT---------VRSlfDIGLGFE-PD---- 109
Cdd:PRK13647 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRevnaenekwVRS--KVGLVFQdPDdqvf 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 -ATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIG----AG 184
Cdd:PRK13647 94 sSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAyldpRG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 185 DAAFMTkakarIMNMVEKA-EIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVE 238
Cdd:PRK13647 174 QETLME-----ILDRLHNQgKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
47-239 |
3.12e-19 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 83.32 E-value: 3.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD----------IGLGFEPDA-----T 111
Cdd:cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSeaelyrlrrrMGMLFQSGAlfdslT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENIlyrGLLL----GLTPRFMREIEDEIIEFADLGDFID-YPIKTySAGMQVRLAFAISTAVDGDILLLDEVIGAGDA 186
Cdd:cd03261 94 VFENV---AFPLrehtRLSEEEIREIVLEKLEAVGLRGAEDlYPAEL-SGGMKKRVALARALALDPELLLYDEPTAGLDP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 187 AFMTKAKARIMNMVEK---AEIMVlaSHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:cd03261 170 IASGVIDDLIRSLKKElglTSIMV--THDLDTAFAIADRIAVLYDGKIVAEGTPEE 223
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
49-237 |
3.24e-19 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 83.28 E-value: 3.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvRSLFDIG----LGFE-----PDATGRENILY- 118
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEG--KQITEPGpdrmVVFQnysllPWLTVRENIALa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 119 -RGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIM 197
Cdd:TIGR01184 79 vDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489053489 198 NMVEKAEIMVL-ASHDLANVRQLCTRALVFKAGTIAFDGRV 237
Cdd:TIGR01184 159 QIWEEHRVTVLmVTHDVDEALLLSDRVVMLTNGPAANIGQI 199
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-236 |
4.79e-19 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 86.04 E-value: 4.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 2 IQPSITLSNVHLHYAASafkersvktlvnallsmrrsaganieDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAG 81
Cdd:COG2274 470 LKGDIELENVSFRYPGD--------------------------SPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLG 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 82 LYPISSGTLKVTGT---------VRSLF-----DIGLgFEpdATGRENIlyrglLLGLTPRFMREIEdEIIEFADLGDFI 147
Cdd:COG2274 524 LYEPTSGRILIDGIdlrqidpasLRRQIgvvlqDVFL-FS--GTIRENI-----TLGDPDATDEEII-EAARLAGLHDFI 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 148 -------DYPI----KTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfmtkAKARIMNMVEKAE---IMVLASHDL 213
Cdd:COG2274 595 ealpmgyDTVVgeggSNLSGGQRQRLAIARALLRNPRILILDEATSALDAE----TEAIILENLRRLLkgrTVIIIAHRL 670
|
250 260
....*....|....*....|...
gi 489053489 214 ANVRqLCTRALVFKAGTIAFDGR 236
Cdd:COG2274 671 STIR-LADRIIVLDKGRIVEDGT 692
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
45-231 |
6.61e-19 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 82.19 E-value: 6.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG-----------TVRSlfDIGLGFE-----P 108
Cdd:cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGlkltddkkninELRQ--KVGMVFQqfnlfP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 109 DATGRENILYrGL--LLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDA 186
Cdd:cd03262 90 HLTVLENITL-APikVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489053489 187 AfMTKAKARIM-NMVEKAEIMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03262 169 E-LVGEVLDVMkDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
45-239 |
1.43e-18 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 81.57 E-value: 1.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFDI---GLGF--E-----PDAT 111
Cdd:COG0410 15 GIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGediTGLPPHRIarlGIGYvpEgrrifPSLT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENilyrgLLLGLTPRFMREIEDEIIE-----FADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEvIGAGDA 186
Cdd:COG0410 95 VEEN-----LLLGAYARRDRAEVRADLErvyelFPRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDE-PSLGLA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489053489 187 AFMTKakaRIMNMVekAEI------MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG0410 169 PLIVE---EIFEII--RRLnregvtILLVEQNARFALEIADRAYVLERGRIVLEGTAAE 222
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
44-235 |
1.55e-18 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 81.10 E-value: 1.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDI-----GLGFEPD------ATG 112
Cdd:cd03245 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPadlrrNIGYVPQdvtlfyGTL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENILYrGLLLGLTPRFMReiedeIIEFADLGDFIDYPIKTYSagMQV-----------RLAFAISTAV--DGDILLLDE 179
Cdd:cd03245 95 RDNITL-GAPLADDERILR-----AAELAGVTDFVNKHPNGLD--LQIgergrglsggqRQAVALARALlnDPPILLLDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 180 VIGAGDAAFMTKAKARIMNMVEKaEIMVLASHDLAnVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03245 167 PTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LLDLVDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
48-213 |
3.95e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 81.21 E-value: 3.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRS---LFDI----GLGFE-PD-----ATGRE 114
Cdd:PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSeetVWDVrrqvGMVFQnPDnqfvgATVQD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NILYrGLLLGLTPR-FMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEvigagdAAFMTKAK 193
Cdd:PRK13635 102 DVAF-GLENIGVPReEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE------ATSMLDPR 174
|
170 180
....*....|....*....|....*..
gi 489053489 194 AR------IMNMVEKAEIMVLA-SHDL 213
Cdd:PRK13635 175 GRrevletVRQLKEQKGITVLSiTHDL 201
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
44-231 |
5.21e-18 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 79.61 E-value: 5.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTL-----KVTGTVRSLFDIGLGFE-----PDATGR 113
Cdd:cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIyiggrDVTDLPPKDRDIAMVFQnyalyPHMTVY 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYrGLLLGLTPRfmREIEDEIIEFADL---GDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMT 190
Cdd:cd03301 91 DNIAF-GLKLRKVPK--DEIDERVREVAELlqiEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489053489 191 KAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03301 168 QMRAELKRLQQRLGTtTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
48-236 |
5.49e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 80.81 E-value: 5.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRS---LFD----IGLGFE-PD---------- 109
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISkenLKEirkkIGIIFQnPDnqfigatved 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 --ATGRENILyrglllgLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAa 187
Cdd:PRK13632 104 diAFGLENKK-------VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP- 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489053489 188 fmtKAKAR---IMNMVEKAEIMVLAS--HDLANVrQLCTRALVFKAGTIAFDGR 236
Cdd:PRK13632 176 ---KGKREikkIMVDLRKTRKKTLISitHDMDEA-ILADKVIVFSEGKLIAQGK 225
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
49-239 |
7.75e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 82.03 E-value: 7.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRslfdIG------LGFEPDATGRENIlyRGLL 122
Cdd:COG0488 331 LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGETVK----IGyfdqhqEELDPDKTVLDEL--RDGA 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 LGLTPRFMREIedeiiefadLGDF------IDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE--------VIgagdaaf 188
Cdd:COG0488 405 PGGTEQEVRGY---------LGRFlfsgddAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEptnhldieTL------- 468
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 189 mtkakarimNMVEKAEI-----MVLASHDLANVRQLCTRALVFKAGTI-AFDGRVED 239
Cdd:COG0488 469 ---------EALEEALDdfpgtVLLVSHDRYFLDRVATRILEFEDGGVrEYPGGYDD 516
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-232 |
9.92e-18 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 80.91 E-value: 9.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 1 MIQPSITLSNVHLHYAasafkersvktlvnallsmrrsaganieDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIA 80
Cdd:COG3842 1 MAMPALELENVSKRYG----------------------------DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIA 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 81 GLYPISSGTLKVTGTV--------RslfDIGLGFEPDA-----TGRENILYrGL-LLGLTPRFMREIEDEIIEFADLGDF 146
Cdd:COG3842 53 GFETPDSGRILLDGRDvtglppekR---NVGMVFQDYAlfphlTVAENVAF-GLrMRGVPKAEIRARVAELLELVGLEGL 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 147 IDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDaafmtkAKAR------IMNMVEKAEI-MVLASHD----LAn 215
Cdd:COG3842 129 ADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALD------AKLReemreeLRRLQRELGItFIYVTHDqeeaLA- 201
|
250
....*....|....*..
gi 489053489 216 vrqLCTRALVFKAGTIA 232
Cdd:COG3842 202 ---LADRIAVMNDGRIE 215
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
51-229 |
1.20e-17 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 80.23 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 51 GISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT--------------VRSLFDiglGFEPDATGRENI 116
Cdd:PRK13537 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEpvpsrarharqrvgVVPQFD---NLDPDFTVRENL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 117 LYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARI 196
Cdd:PRK13537 102 LVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERL 181
|
170 180 190
....*....|....*....|....*....|...
gi 489053489 197 MNMVEKAEIMVLASHDLANVRQLCTRALVFKAG 229
Cdd:PRK13537 182 RSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
45-232 |
1.63e-17 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 77.08 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvrslfdiglgfepdatgrenilyrglllg 124
Cdd:cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG------------------------------ 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 125 ltprfmreiedEIIEFADLGDFIDYPIKT---YSAGMQVRLAFAISTAVDGDILLLDE---VIGAGDA----AFMTKAKA 194
Cdd:cd03216 62 -----------KEVSFASPRDARRAGIAMvyqLSVGERQMVEIARALARNARLLILDEptaALTPAEVerlfKVIRRLRA 130
|
170 180 190
....*....|....*....|....*....|....*...
gi 489053489 195 RimnmvEKAEIMVlaSHDLANVRQLCTRALVFKAGTIA 232
Cdd:cd03216 131 Q-----GVAVIFI--SHRLDEVFEIADRVTVLRDGRVV 161
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
45-239 |
2.15e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 79.38 E-value: 2.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDI-GLGFEPDATG-------RENI 116
Cdd:COG4152 13 DKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRrRIGYLPEERGlypkmkvGEQL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 117 LYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE-----------VIgagd 185
Cdd:COG4152 93 VYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEpfsgldpvnveLL---- 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489053489 186 aafmtkaKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG4152 169 -------KDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDE 215
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
45-212 |
2.20e-17 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 77.83 E-value: 2.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLFD---------IGLGFE-----PD 109
Cdd:cd03292 13 GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQdVSDLRGraipylrrkIGVVFQdfrllPD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFm 189
Cdd:cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT- 171
|
170 180
....*....|....*....|....
gi 489053489 190 TKAKARIMNMVEKA-EIMVLASHD 212
Cdd:cd03292 172 TWEIMNLLKKINKAgTTVVVATHA 195
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
43-234 |
3.19e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 78.59 E-value: 3.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 43 IEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT--------VRSLFdIG-------LGFE 107
Cdd:COG1101 16 VNEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKdvtklpeyKRAKY-IGrvfqdpmMGTA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 PDATGRENILY-------RGLLLGLTPRfMREIEDEIIEFADLG--DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLD 178
Cdd:COG1101 95 PSMTIEENLALayrrgkrRGLRRGLTKK-RRELFRELLATLGLGleNRLDTKVGLLSGGQRQALSLLMATLTKPKLLLLD 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 179 EVIGAGDAafmtKAKARIMNMVEK--AE-----IMVlaSHDLANVRQLCTRALVFKAGTIAFD 234
Cdd:COG1101 174 EHTAALDP----KTAALVLELTEKivEEnnlttLMV--THNMEQALDYGNRLIMMHEGRIILD 230
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
47-235 |
5.55e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 78.35 E-value: 5.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG-----TVRSLFD----IGLGFE-PD-----AT 111
Cdd:PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGkpidySRKGLMKlresVGMVFQdPDnqlfsAS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTK 191
Cdd:PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489053489 192 AKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK13636 180 IMKLLVEMQKELGLtIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
43-239 |
5.72e-17 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 79.04 E-value: 5.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 43 IEDIH-------ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrsLF--------DIGLGFE 107
Cdd:COG1118 5 VRNISkrfgsftLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRD--LFtnlpprerRVGFVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 -----PDATGRENILYrglllGLT--PRFMREIE---DEIIEFADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILL 176
Cdd:COG1118 83 hyalfPHMTVAENIAF-----GLRvrPPSKAEIRarvEELLELVQLEGLADrYP-SQLSGGQRQRVALARALAVEPEVLL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 177 LDEVIGAGDaafmtkAKAR------IMNMVEKAEIM-VLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG1118 157 LDEPFGALD------AKVRkelrrwLRRLHDELGGTtVFVTHDQEEALELADRVVVMNQGRIEQVGTPDE 220
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
49-242 |
9.17e-17 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 76.67 E-value: 9.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--------TVRSL-FDIGLGFE-----PDATGRE 114
Cdd:PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlkvndpkvDERLIrQEAGMVFQqfylfPHLTALE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NILYRGL-LLGLTPRFMREIEDEIIEFADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKA 192
Cdd:PRK09493 97 NVMFGPLrVRGASKEEAEKQARELLAKVGLAERAHhYP-SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEV 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489053489 193 KARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK09493 176 LKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
49-179 |
1.94e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 78.18 E-value: 1.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRslfdIG-----LGFEPDATGRENILYrglll 123
Cdd:COG0488 14 LDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGLR----IGylpqePPLDDDLTVLDTVLD----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 124 GLTPRF-----MREIE-------DEIIEFADLGDFIDY--------------------------PIKTYSAGMQVRLAFA 165
Cdd:COG0488 85 GDAELRaleaeLEELEaklaepdEDLERLAELQEEFEAlggweaearaeeilsglgfpeedldrPVSELSGGWRRRVALA 164
|
170
....*....|....
gi 489053489 166 ISTAVDGDILLLDE 179
Cdd:COG0488 165 RALLSEPDLLLLDE 178
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
48-219 |
3.35e-16 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 74.32 E-value: 3.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTlkvtgtvrslfdIGLGFEPDATGR----ENILYRGLLL 123
Cdd:TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE------------VRWNGTPLAEQRdephENILYLGHLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 124 GLTP--------RFMREIE-------DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAF 188
Cdd:TIGR01189 83 GLKPelsalenlHFWAAIHggaqrtiEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAG 162
|
170 180 190
....*....|....*....|....*....|....
gi 489053489 189 MTKAKARIMNMVEKAEIMVLASH---DLANVRQL 219
Cdd:TIGR01189 163 VALLAGLLRAHLARGGIVLLTTHqdlGLVEAREL 196
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
49-231 |
3.83e-16 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 76.66 E-value: 3.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF-----DIGLGFEPDATGRENILYRGLLL 123
Cdd:PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLhardrKVGFVFQHYALFRHMTVFDNIAF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 124 GLT--PRFMREIEDEI-------IEFADLGDFID-YPIKtYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAK 193
Cdd:PRK10851 98 GLTvlPRRERPNAAAIkakvtqlLEMVQLAHLADrYPAQ-LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
|
170 180 190
....*....|....*....|....*....|....*....
gi 489053489 194 ARIMNMVEKAEIM-VLASHDLANVRQLCTRALVFKAGTI 231
Cdd:PRK10851 177 RWLRQLHEELKFTsVFVTHDQEEAMEVADRVVVMSQGNI 215
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
45-231 |
4.63e-16 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 76.27 E-value: 4.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV--------RslfDIGLGFE-----PDAT 111
Cdd:COG3839 15 GVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDvtdlppkdR---NIAMVFQsyalyPHMT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYrGLLLGLTPRfmREIEDEIIEFAD---LGDFID-YPiKTYSAGMQVR--LAFAIstAVDGDILLLDEVIGAGD 185
Cdd:COG3839 92 VYENIAF-PLKLRKVPK--AEIDRRVREAAEllgLEDLLDrKP-KQLSGGQRQRvaLGRAL--VREPKVFLLDEPLSNLD 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489053489 186 AAFMTKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:COG3839 166 AKLRVEMRAEIKRLHRRLGTtTIYVTHDQVEAMTLADRIAVMNDGRI 212
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
43-231 |
5.73e-16 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 73.83 E-value: 5.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 43 IEDIH--------ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD----IGLGF-EPD 109
Cdd:cd03226 2 IENISfsykkgteILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKErrksIGYVMqDVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENILYRGLLLGL--TPRFMREIEdEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAA 187
Cdd:cd03226 82 YQLFTDSVREELLLGLkeLDAGNEQAE-TVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489053489 188 FMtKAKARIMNMVEKAE-IMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03226 161 NM-ERVGELIRELAAQGkAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
49-219 |
1.06e-15 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 73.37 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIGL---------GFEPDATGRENILYR 119
Cdd:PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEachylghrnAMKPALTVAENLEFW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 120 GLLLGLTPRFMreieDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfmtkAKARIMNM 199
Cdd:PRK13539 98 AAFLGGEELDI----AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA----AVALFAEL 169
|
170 180
....*....|....*....|....*..
gi 489053489 200 V----EKAEIMVLASH---DLANVRQL 219
Cdd:PRK13539 170 IrahlAQGGIVIAATHiplGLPGAREL 196
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
46-239 |
1.08e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 75.98 E-value: 1.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD--------IGLGFEPDATGRENIL 117
Cdd:PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDhklaaqlgIGIIYQELSVIDELTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 YRGLLLGLTP------------RFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGA-- 183
Cdd:PRK09700 98 LENLYIGRHLtkkvcgvniidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSlt 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 184 ---GDAAFMtkakarIMNMVEK-AEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK09700 178 nkeVDYLFL------IMNQLRKeGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
49-242 |
1.73e-15 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 73.61 E-value: 1.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF--------------DIGLGFepDATGRE 114
Cdd:COG4559 17 LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWspwelarrravlpqHSSLAF--PFTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NIlyrglLLGLTPRFMREIEDEII-----EFADLGDFIDYPIKTYSAGMQVRLAFA-----ISTAVDGD--ILLLDEVIG 182
Cdd:COG4559 95 VV-----ALGRAPHGSSAAQDRQIvrealALVGLAHLAGRSYQTLSGGEQQRVQLArvlaqLWEPVDGGprWLFLDEPTS 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 183 AGDAA----FMTKAK--ARIMNMVekaeIMVLasHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:COG4559 170 ALDLAhqhaVLRLARqlARRGGGV----VAVL--HDLNLAAQYADRILLLHQGRLVAQGTPEEVLT 229
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
46-239 |
1.85e-15 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 75.05 E-value: 1.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDI------GLGF---E----PDATG 112
Cdd:COG1129 17 VKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPrdaqaaGIAIihqElnlvPNLSV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENIlyrglLLGLTPRF--------MREIEDEIieFADLGDFID--YPIKTYSAGMQ--VRLAFAISTavDGDILLLDE- 179
Cdd:COG1129 97 AENI-----FLGREPRRgglidwraMRRRAREL--LARLGLDIDpdTPVGDLSVAQQqlVEIARALSR--DARVLILDEp 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 180 --VIGAGDAA--FmtkakaRIMNMVeKAE----IMVlaSHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG1129 168 taSLTEREVErlF------RIIRRL-KAQgvaiIYI--SHRLDEVFEIADRVTVLRDGRLVGTGPVAE 226
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
46-239 |
2.22e-15 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 73.93 E-value: 2.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYP---ISSGTLKVTGTvrslfDIGlgfepDATGRENILYRGLL 122
Cdd:COG0444 18 VKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPppgITSGEILFDGE-----DLL-----KLSEKELRKIRGRE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 LG---------LTPRFM-----------------REIEDEIIE-FADLGdfIDYPIKTY-------SAGMQVRLAFAIST 168
Cdd:COG0444 88 IQmifqdpmtsLNPVMTvgdqiaeplrihgglskAEARERAIElLERVG--LPDPERRLdryphelSGGMRQRVMIARAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 169 AVDGDILLLDEVIGAGDAAfmtkAKARIMNMVE--KAEI---MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG0444 166 ALEPKLLIADEPTTALDVT----IQAQILNLLKdlQRELglaILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 237
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
44-239 |
3.65e-15 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 74.41 E-value: 3.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIG--------LGFEP---DATG 112
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPAswrrqiawVPQNPylfAGTI 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENIlyrglLLGLTPRFMREIEdEIIEFADLGDFI-------DYPIKTYSAGMQV----RLAFAISTAVDGDILLLDEVI 181
Cdd:COG4988 428 RENL-----RLGRPDASDEELE-AALEAAGLDEFVaalpdglDTPLGEGGRGLSGgqaqRLALARALLRDAPLLLLDEPT 501
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 182 GAGDAAfmtkAKARIMNMVEKA---EIMVLASHDLANVRQlCTRALVFKAGTIAFDGRVED 239
Cdd:COG4988 502 AHLDAE----TEAEILQALRRLakgRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEE 557
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
48-231 |
3.78e-15 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 72.37 E-value: 3.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFDIGLGFE-------PDATGRENIL 117
Cdd:cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGedaTDVPVQERNVGFVfqhyalfRHMTVFDNVA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 YRgllLGLTPRFMREIEDEI-------IEFADLGDFID-YPIKtYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFM 189
Cdd:cd03296 97 FG---LRVKPRSERPPEAEIrakvhelLKLVQLDWLADrYPAQ-LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489053489 190 TKAKARIMNMVEKAEIM-VLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03296 173 KELRRWLRRLHDELHVTtVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
48-229 |
4.61e-15 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 70.49 E-value: 4.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvrSLFDIGLGF----------EP---DATGRE 114
Cdd:cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGV--DLRDLDLESlrkniayvpqDPflfSGTIRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NILyrglllgltprfmreiedeiiefadlgdfidypiktySAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfmtkAKA 194
Cdd:cd03228 95 NIL-------------------------------------SGGQRQRIAIARALLRDPPILILDEATSALDPE----TEA 133
|
170 180 190
....*....|....*....|....*....|....*...
gi 489053489 195 RIMNMVEKAE---IMVLASHDLANVRQlCTRALVFKAG 229
Cdd:cd03228 134 LILEALRALAkgkTVIVIAHRLSTIRD-ADRIIVLDDG 170
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
52-242 |
8.60e-15 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 71.32 E-value: 8.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLK-----VTGT------VRSLF-------------DIGLGFE 107
Cdd:COG3840 18 FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILwngqdLTALppaerpVSMLFqennlfphltvaqNIGLGLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 PDatgrenilyrgllLGLTPRFMREIEdEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAA 187
Cdd:COG3840 98 PG-------------LKLTAEQRAQVE-QALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489053489 188 FmtkaKARIMNMVEK--AE-----IMVlaSHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:COG3840 164 L----RQEMLDLVDElcRErgltvLMV--THDPEDAARIADRVLLVADGRIAADGPTAALLD 219
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
48-232 |
1.15e-14 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 71.18 E-value: 1.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD-------IG-----LGFEPDATGREN 115
Cdd:cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDpvelrrkIGyviqqIGLFPHMTVEEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 116 ILYRGLLLGLTPRFMREIEDEIIEFADLGD--FID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafMTKA 192
Cdd:cd03295 96 IALVPKLLKWPKEKIRERADELLALVGLDPaeFADrYP-HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP--ITRD 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489053489 193 K-----ARIMNMVEKAEIMVlaSHDLANVRQLCTRALVFKAGTIA 232
Cdd:cd03295 173 QlqeefKRLQQELGKTIVFV--THDIDEAFRLADRIAIMKNGEIV 215
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
53-235 |
1.29e-14 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 70.77 E-value: 1.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 53 SVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-----------VRSLFDIGLGFePDATGRENIlyrgl 121
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQdhtttppsrrpVSMLFQENNLF-SHLTVAQNI----- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 122 LLGLTP-----RFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFmtkaKARI 196
Cdd:PRK10771 93 GLGLNPglklnAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL----RQEM 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489053489 197 MNMV-----EKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK10771 169 LTLVsqvcqERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
48-239 |
1.37e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 71.62 E-value: 1.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGT-----LKVTGTVRSLFDI----GLGFE-PDATGRENIL 117
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKiiidgVDITDKKVKLSDIrkkvGLVFQyPEYQLFEETI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 YRGLLLGltPRFMREIEDEI-------IEFADLgDFIDYPIKT---YSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAa 187
Cdd:PRK13637 102 EKDIAFG--PINLGLSEEEIenrvkraMNIVGL-DYEDYKDKSpfeLSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP- 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 188 fmtKAKARIMNMV-----EKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK13637 178 ---KGRDEILNKIkelhkEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
49-235 |
1.46e-14 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 70.93 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKV--------------TGTVRSLFD-IGLGFE-----P 108
Cdd:PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgditidtarslsqqKGLIRQLRQhVGFVFQnfnlfP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 109 DATGRENILYRGLLLGLTPRfmreieDEIIEFAD--------LGDFIDYPiKTYSAGMQVRLAFAISTAVDGDILLLDEV 180
Cdd:PRK11264 99 HRTVLENIIEGPVIVKGEPK------EEATARARellakvglAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEP 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 181 IGAGDAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK11264 172 TSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
52-242 |
1.51e-14 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 72.06 E-value: 1.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrsLFD-------------IGLGFE-----PDATGR 113
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEV--LQDsargiflpphrrrIGYVFQearlfPHLSVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYrglllGL--TPRFMREIE-DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfmt 190
Cdd:COG4148 96 GNLLY-----GRkrAPRAERRISfDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLA--- 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 191 kAKARIMNMVEK----AEI-MVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:COG4148 168 -RKAEILPYLERlrdeLDIpILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLS 223
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
48-231 |
1.52e-14 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 71.14 E-value: 1.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT------------VRSLfDIGLGFE-----PDA 110
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQdiaamsrkelreLRRK-KISMVFQsfallPHR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 TGRENILYrGL-LLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFM 189
Cdd:cd03294 118 TVLENVAF-GLeVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489053489 190 TKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03294 197 REMQDELLRLQAELQKtIVFITHDLDEALRLGDRIAIMKDGRL 239
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
49-231 |
1.59e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 71.30 E-value: 1.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFD----IGLGFE-PD----------- 109
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGdllTEENVWDirhkIGMVFQnPDnqfvgatvedd 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 -ATGRENilyrgllLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEvigagdAAF 188
Cdd:PRK13650 103 vAFGLEN-------KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE------ATS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489053489 189 MTKAKAR------IMNMVEKAEIMVLA-SHDLANVrQLCTRALVFKAGTI 231
Cdd:PRK13650 170 MLDPEGRleliktIKGIRDDYQMTVISiTHDLDEV-ALSDRVLVMKNGQV 218
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
49-239 |
2.35e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 72.01 E-value: 2.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRS--------------------LFdiglgfeP 108
Cdd:PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCArltpakahqlgiylvpqeplLF-------P 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 109 DATGRENILYRgllLGLTPRFMREIEDEIiefADLGDFIDYPIKTYSAGMQVRLAFAISTAV--DGDILLLDEVIGAGDA 186
Cdd:PRK15439 100 NLSVKENILFG---LPKRQASMQKMKQLL---AALGCQLDLDSSAGSLEVADRQIVEILRGLmrDSRILILDEPTASLTP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489053489 187 AFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK15439 174 AETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
46-242 |
6.13e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 69.73 E-value: 6.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTL----------KVTGTVRSLFD-------------- 101
Cdd:PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewifkdeknkKKTKEKEKVLEklviqktrfkkikk 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 102 -------IGLGFEP------DATGRENILYRGLLLGLTPRFMREIEDEIIEFADLG-DFIDYPIKTYSAGMQVRLAFAIS 167
Cdd:PRK13651 100 ikeirrrVGVVFQFaeyqlfEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDeSYLQRSPFELSGGQKRRVALAGI 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 168 TAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
49-230 |
7.65e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 66.70 E-value: 7.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRslfdiglgfepdatgrenILYrglllgltpr 128
Cdd:cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVK------------------IGY---------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 129 fmreiedeiieFADLgdfidypiktySAGMQVRLAFAISTAVDGDILLLDEVigagdaafmT-----KAKARIMNMVEKA 203
Cdd:cd03221 68 -----------FEQL-----------SGGEKMRLALAKLLLENPNLLLLDEP---------TnhldlESIEALEEALKEY 116
|
170 180
....*....|....*....|....*...
gi 489053489 204 E-IMVLASHDLANVRQLCTRALVFKAGT 230
Cdd:cd03221 117 PgTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
48-247 |
1.02e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 70.43 E-value: 1.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT--VRSLFDI--GLGFEP--DA-----TGRENI 116
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKsiLTNISDVhqNMGYCPqfDAiddllTGREHL 2033
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 117 LYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARI 196
Cdd:TIGR01257 2034 YLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489053489 197 MNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAISFYNSG 247
Cdd:TIGR01257 2114 VSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDG 2164
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
33-242 |
3.25e-13 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 67.10 E-value: 3.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 33 LSMRRsAGANIedihaLKGISVDIARGERVALIGHNGAGKSTFLKTIAG-LYPISsgtlkvtGTVRsLFDIGLGfepDAT 111
Cdd:PRK13548 8 LSVRL-GGRTL-----LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGeLSPDS-------GEVR-LNGRPLA---DWS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLL-----------------LGLTPRFMREIEDEII-----EFADLGDFIDYPIKTYSAGMQVRLAFA---- 165
Cdd:PRK13548 71 PAELARRRAVLpqhsslsfpftveevvaMGRAPHGLSRAEDDALvaaalAQVDLAHLAGRDYPQLSGGEQQRVQLArvla 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 166 -IStAVDGD--ILLLDEVIGAGDAA----FMTKAKarimNMVEKAEIMVLAS-HDLANVRQLCTRALVFKAGTIAFDGRV 237
Cdd:PRK13548 151 qLW-EPDGPprWLLLDEPTSALDLAhqhhVLRLAR----QLAHERGLAVIVVlHDLNLAARYADRIVLLHQGRLVADGTP 225
|
....*
gi 489053489 238 EDAIS 242
Cdd:PRK13548 226 AEVLT 230
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
45-231 |
3.43e-13 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 66.88 E-value: 3.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvRSLFD-------IGLGFE-----PDATG 112
Cdd:cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG--KDITNlpphkrpVNTVFQnyalfPHLTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENILYrGL-LLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTK 191
Cdd:cd03300 90 FENIAF-GLrLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489053489 192 AKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03300 169 MQLELKRLQKELGItFVFVTHDQEEALTMSDRIAVMNKGKI 209
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
49-224 |
4.64e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 65.98 E-value: 4.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvrslfdiGLGFEPDATGReNILYRGLLLG---- 124
Cdd:cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG-------PLDFQRDSIAR-GLLYLGHAPGiktt 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 125 LTP----RFMREI-EDEIIEFA----DLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKAR 195
Cdd:cd03231 88 LSVlenlRFWHADhSDEQVEEAlarvGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
|
170 180
....*....|....*....|....*....
gi 489053489 196 IMNMVEKAEIMVLASHDLANVRQLCTRAL 224
Cdd:cd03231 168 MAGHCARGGMVVLTTHQDLGLSEAGAREL 196
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
49-243 |
5.17e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 66.98 E-value: 5.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISsGTLKVTGTV----RSLFD-----------IGLGF-EPD--- 109
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRVEGRVeffnQNIYErrvnlnrlrrqVSMVHpKPNlfp 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENILYRGLLLGLTPRF-MREIEDEIIEFADLGDFIDYPIKT----YSAGMQVRLAFAISTAVDGDILLLDEVIGAG 184
Cdd:PRK14258 102 MSVYDNVAYGVKIVGWRPKLeIDDIVESALKDADLWDEIKHKIHKsaldLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 185 DAAFMTKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGtiafDGRVEDAISF 243
Cdd:PRK14258 182 DPIASMKVESLIQSLRLRSELtMVIVSHNLHQVSRLSDFTAFFKGN----ENRIGQLVEF 237
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
45-239 |
8.59e-13 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 66.64 E-value: 8.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT------------VRSlfDIGLGFEPDA-- 110
Cdd:COG1135 17 PVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVdltalserelraARR--KIGMIFQHFNll 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 ---TGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDA 186
Cdd:COG1135 95 ssrTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADaYP-SQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 187 AfMTKAkarIMNMVekAEI-------MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG1135 174 E-TTRS---ILDLL--KDInrelgltIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLD 227
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
44-231 |
9.61e-13 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 65.32 E-value: 9.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---------TVRSLF-----DIGLgFEpd 109
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGidirdisrkSLRSMIgvvlqDTFL-FS-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENILYRglllglTPRFMREIEDEIIEFADLGDFIDYPIKTY-----------SAGMQVRLAFAISTAVDGDILLLD 178
Cdd:cd03254 91 GTIMENIRLG------RPNATDEEVIEAAKEAGAHDFIMKLPNGYdtvlgenggnlSQGERQLLAIARAMLRDPKILILD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 179 EVIGAGDaafmTKAKARIMN-----MVEKAEIMVlaSHDLANVRQlCTRALVFKAGTI 231
Cdd:cd03254 165 EATSNID----TETEKLIQEaleklMKGRTSIII--AHRLSTIKN-ADKILVLDDGKI 215
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
45-231 |
1.03e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 66.27 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFD----IGLGFE-PD-----AT 111
Cdd:PRK13642 19 DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGellTAENVWNlrrkIGMVFQnPDnqfvgAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTK 191
Cdd:PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489053489 192 AKARIMNMVEKAEIMVLA-SHDLANVRQlCTRALVFKAGTI 231
Cdd:PRK13642 179 IMRVIHEIKEKYQLTVLSiTHDLDEAAS-SDRILVMKAGEI 218
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
48-242 |
1.19e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 65.78 E-value: 1.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT----------VRSLfdIGLGFEPDAT---GR- 113
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIdtgdfsklqgIRKL--VGIVFQNPETqfvGRt 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 --ENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTK 191
Cdd:PRK13644 95 veEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489053489 192 AKARIMNMVEKAEIMVLASHDLANVrQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK13644 175 VLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLS 224
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
44-179 |
2.42e-12 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 65.96 E-value: 2.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFD-IGLGF-EP---DATG 112
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGvdirdlTLESLRRqIGVVPqDTflfSGTI 430
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 113 RENILYrglllGLTPRFMREIEdEIIEFADLGDFI-------DYPI----KTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:COG1132 431 RENIRY-----GRPDATDEEVE-EAAKAAQAHEFIealpdgyDTVVgergVNLSGGQRQRIAIARALLKDPPILILDE 502
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
45-242 |
3.64e-12 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 65.25 E-value: 3.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG-TVRSLF-------------DIGLGFEPDa 110
Cdd:PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGdDVEALSaraasrrvasvpqDTSLSFEFD- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 tGRENIlyrglLLGLTP---RFMREIE------DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVI 181
Cdd:PRK09536 94 -VRQVV-----EMGRTPhrsRFDTWTEtdraavERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 182 GAGDAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK09536 168 ASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
30-212 |
5.39e-12 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 65.13 E-value: 5.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 30 NALL---SMRRSAGANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD----- 101
Cdd:PRK10535 2 TALLelkDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDadala 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 102 ------IGLGFE-----PDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAV 170
Cdd:PRK10535 82 qlrrehFGFIFQryhllSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489053489 171 DGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVLASHD 212
Cdd:PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
48-239 |
5.81e-12 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 63.86 E-value: 5.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKV---------------TGTVRSLFDIGLgFEpDATG 112
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLrgqhieglpghqiarMGVVRTFQHVRL-FR-EMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENILY-------RGLLLGL--TPRFmREIEDEIIEFA-------DLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILL 176
Cdd:PRK11300 98 IENLLVaqhqqlkTGLFSGLlkTPAF-RRAESEALDRAatwlervGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 177 LDEViGAGDAAFMTKA-KARIMNMVEKAEIMV-LASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK11300 177 LDEP-AAGLNPKETKElDELIAELRNEHNVTVlLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
53-235 |
5.91e-12 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 62.90 E-value: 5.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 53 SVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-----------VRSLFdiglgfepdatgRENILYRGL 121
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVdvtaappadrpVSMLF------------QENNLFAHL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 122 L------LGLTPRF-MREIEDEIIEFA----DLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMT 190
Cdd:cd03298 86 TveqnvgLGLSPGLkLTAEDRQAIEVAlarvGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489053489 191 KAKARIMNMVEKAEIMVL-ASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:cd03298 166 EMLDLVLDLHAETKMTVLmVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
49-241 |
6.38e-12 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 63.56 E-value: 6.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG----------------------------TVRSLf 100
Cdd:COG4604 17 LDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGldvattpsrelakrlailrqenhinsrlTVREL- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 101 dIGLGFEPDATGRenilyrglllgLTPRfMREIEDEIIEFADLGDFIDYPIKTYSAGmQVRLAF-AISTAVDGDILLLDE 179
Cdd:COG4604 96 -VAFGRFPYSKGR-----------LTAE-DREIIDEAIAYLDLEDLADRYLDELSGG-QRQRAFiAMVLAQDTDYVLLDE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489053489 180 VIGAGDaafMtKAKARIMNMVEKAE-------IMVLasHDLANVRQLCTRALVFKAGTIAFDGRVEDAI 241
Cdd:COG4604 162 PLNNLD---M-KHSVQMMKLLRRLAdelgktvVIVL--HDINFASCYADHIVAMKDGRVVAQGTPEEII 224
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
48-213 |
8.41e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 63.67 E-value: 8.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLY-----PISSGT-LKVTGTVRSLFDI----GLGFE-PD-----AT 111
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLlpddnPNSKITvDGITLTAKTVWDIrekvGIVFQnPDnqfvgAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYrGLLLGLTPRF-MREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMT 190
Cdd:PRK13640 102 VGDDVAF-GLENRAVPRPeMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180
|
170 180
....*....|....*....|....
gi 489053489 191 KAKARIMNMVEKAEIMVLA-SHDL 213
Cdd:PRK13640 181 QILKLIRKLKKKNNLTVISiTHDI 204
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
35-231 |
9.17e-12 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 62.87 E-value: 9.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 35 MRRSAGANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD-----------IG 103
Cdd:PRK10584 12 LKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDeearaklrakhVG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 104 LGFE-----PDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLD 178
Cdd:PRK10584 92 FVFQsfmliPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 179 EVIGAGDaafmTKAKARIMNMV-----EKAEIMVLASHDLanvrQL---CTRALVFKAGTI 231
Cdd:PRK10584 172 EPTGNLD----RQTGDKIADLLfslnrEHGTTLILVTHDL----QLaarCDRRLRLVNGQL 224
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-240 |
1.51e-11 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 62.07 E-value: 1.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 1 MIQPSITLSNVHLHYAASAfkersvktlvnallsmrrsaganiEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIA 80
Cdd:COG4181 4 SSAPIIELRGLTKTVGTGA------------------------GELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLA 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 81 GLYPISSGTLKVTGtvRSLFdiGLGFEPDATGR-ENIlyrG-------LLLGLT-------P------RFMREIEDEIIE 139
Cdd:COG4181 60 GLDRPTSGTVRLAG--QDLF--ALDEDARARLRaRHV---GfvfqsfqLLPTLTalenvmlPlelagrRDARARARALLE 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 140 FADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfmtkAKARIMNMV-----EKAEIMVLASHD- 212
Cdd:COG4181 133 RVGLGHRLDhYP-AQLSGGEQQRVALARAFATEPAILFADEPTGNLDAA----TGEQIIDLLfelnrERGTTLVLVTHDp 207
|
250 260
....*....|....*....|....*....
gi 489053489 213 -LAnvrQLCTRALVFKAGTIAFDGRVEDA 240
Cdd:COG4181 208 aLA---ARCDRVLRLRAGRLVEDTAATAA 233
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
46-212 |
1.79e-11 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 63.32 E-value: 1.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF-----DIGLGFE-----PDATGREN 115
Cdd:PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVppyqrPINMMFQsyalfPHMTVEQN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 116 ILYrGLLLGLTPRfmREIED---EIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKA 192
Cdd:PRK11607 112 IAF-GLKQDKLPK--AEIASrvnEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188
|
170 180
....*....|....*....|.
gi 489053489 193 KARIMNMVEKAEIM-VLASHD 212
Cdd:PRK11607 189 QLEVVDILERVGVTcVMVTHD 209
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
42-239 |
2.50e-11 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 61.91 E-value: 2.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 42 NIEDIH-------ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSL----------FD--- 101
Cdd:PRK10619 7 NVIDLHkrygeheVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLvrdkdgqlkvADknq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 102 -------IGLGFE-----PDATGRENILYRGL-LLGLTPRFMReiEDEIIEFADLGdfID------YPIKtYSAGMQVRL 162
Cdd:PRK10619 87 lrllrtrLTMVFQhfnlwSHMTVLENVMEAPIqVLGLSKQEAR--ERAVKYLAKVG--IDeraqgkYPVH-LSGGQQQRV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 163 AFAISTAVDGDILLLDEVIGAGDAAFMTKAkARIMN-MVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEV-LRIMQqLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
45-240 |
2.75e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 62.74 E-value: 2.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD----IGLG-------FE--PDAT 111
Cdd:COG3845 17 GVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSprdaIALGigmvhqhFMlvPNLT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENIlyrglLLGLTPRF-----MREIEDEIIEFAD-LGDFID--YPIKTYSAGMQVRlafaistaV--------DGDIL 175
Cdd:COG3845 97 VAENI-----VLGLEPTKggrldRKAARARIRELSErYGLDVDpdAKVEDLSVGEQQR--------VeilkalyrGARIL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489053489 176 LLDE---VIGAGDA----AFMTKAKARimnmvEKAEIMVlaSHDLANVRQLCTRALVFKAGTIAFDGRVEDA 240
Cdd:COG3845 164 ILDEptaVLTPQEAdelfEILRRLAAE-----GKSIIFI--THKLREVMAIADRVTVLRRGKVVGTVDTAET 228
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
48-245 |
6.66e-11 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 61.05 E-value: 6.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--TVRSLFDIGLGFEPDA--------------- 110
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGqpTRQALQKNLVAYVPQSeevdwsfpvlvedvv 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 -TGRENilYRGLLLGLTPRfMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDaafm 189
Cdd:PRK15056 102 mMGRYG--HMGWLRRAKKR-DRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD---- 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 190 TKAKARIMNMV----EKAEIMVLASHDLANVRQLCTRALVFKaGTIAFDGRVEDAISFYN 245
Cdd:PRK15056 175 VKTEARIISLLrelrDEGKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGPTETTFTAEN 233
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
44-235 |
6.93e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 60.79 E-value: 6.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG-----TVRSLF----DIGLGFE-PDatgr 113
Cdd:PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpldySKRGLLalrqQVATVFQdPE---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYRGL---------LLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAG 184
Cdd:PRK13638 88 QQIFYTDIdsdiafslrNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489053489 185 DAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK13638 168 DPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
49-243 |
7.90e-11 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 60.47 E-value: 7.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF----------DIGLGFEpDATGREN--- 115
Cdd:PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLnraqrkafrrDIQMVFQ-DSISAVNprk 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 116 ----ILYRGL--LLGLTPRFMREIEDEIIEFADLGDFI-DYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAF 188
Cdd:PRK10419 107 tvreIIREPLrhLLSLDKAERLARASEMLRAVDLDDSVlDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 189 MTKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAISF 243
Cdd:PRK10419 187 QAGVIRLLKKLQQQFGTaCLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTF 242
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
46-242 |
8.15e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 61.36 E-value: 8.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKV----------------TGTV------------- 96
Cdd:TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrvgdewvdmtkpgpdgRGRAkryigilhqeydl 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 97 ---RSLFD-----IGLGFePDATGRENILYRGLLLGLTPRFMREIEDEiiefadlgdfidYPiKTYSAGMQVRLAFAIST 168
Cdd:TIGR03269 377 yphRTVLDnlteaIGLEL-PDELARMKAVITLKMVGFDEEKAEEILDK------------YP-DELSEGERHRVALAQVL 442
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 169 AVDGDILLLDEVIGAGDAAFMTKAKARIMNM-VEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:TIGR03269 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKArEEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
45-179 |
8.17e-11 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 60.44 E-value: 8.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTlKVTGTVrsLFD-----------------IGLGFE 107
Cdd:COG1117 23 DKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDLIPGA-RVEGEI--LLDgediydpdvdvvelrrrVGMVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 -----PdATGRENILYrGL-LLGLTPRfmREIeDEIIEFA--------DLGDFIDYPIKTYSAGMQVRLAFAISTAVDGD 173
Cdd:COG1117 100 kpnpfP-KSIYDNVAY-GLrLHGIKSK--SEL-DEIVEESlrkaalwdEVKDRLKKSALGLSGGQQQRLCIARALAVEPE 174
|
....*.
gi 489053489 174 ILLLDE 179
Cdd:COG1117 175 VLLMDE 180
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
45-232 |
1.07e-10 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 60.81 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVtGTVR------SLFDIGLGFE-----PDATGR 113
Cdd:PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRmndvppAERGVGMVFQsyalyPHLSVA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYrGLLLGLTPRfmREIE---DEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMT 190
Cdd:PRK11000 94 ENMSF-GLKLAGAKK--EEINqrvNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489053489 191 KAKARIMNMVEKAE-IMVLASHDLANVRQLCTRALVFKAGTIA 232
Cdd:PRK11000 171 QMRIEISRLHKRLGrTMIYVTHDQVEAMTLADKIVVLDAGRVA 213
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
44-235 |
1.11e-10 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 58.86 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTL--------KVTGTVRSLFDIgLGFEP---DATG 112
Cdd:cd03247 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEItldgvpvsDLEKALSSLISV-LNQRPylfDTTL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 113 RENilyrgllLGLtpRFmreiedeiiefadlgdfidypiktySAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafmtKA 192
Cdd:cd03247 92 RNN-------LGR--RF-------------------------SGGERQRLALARILLQDAPIVLLDEPTVGLDP----IT 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489053489 193 KARIMNMV-----EKAEIMVlaSHDLANVRQLcTRALVFKAGTIAFDG 235
Cdd:cd03247 134 ERQLLSLIfevlkDKTLIWI--THHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
52-231 |
1.30e-10 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 60.50 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSL--FDIGLGFE-----PDATGRENILYrGL 121
Cdd:PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGedvTHRSIqqRDICMVFQsyalfPHMSLGENVGY-GL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 122 -LLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMV 200
Cdd:PRK11432 104 kMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183
|
170 180 190
....*....|....*....|....*....|..
gi 489053489 201 EKAEIMVL-ASHDLANVRQLCTRALVFKAGTI 231
Cdd:PRK11432 184 QQFNITSLyVTHDQSEAFAVSDTVIVMNKGKI 215
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
45-186 |
1.33e-10 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 59.48 E-value: 1.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFD-IGL-GFEP---DATGR 113
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGvdirdlNLRWLRSqIGLvSQEPvlfDGTIA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYrglllGLTPRFMREIEdEIIEFADLGDFI-DYPIK----------TYSAGMQVRLAFAISTAVDGDILLLDEVIG 182
Cdd:cd03249 95 ENIRY-----GKPDATDEEVE-EAAKKANIHDFImSLPDGydtlvgergsQLSGGQKQRIAIARALLRNPKILLLDEATS 168
|
....
gi 489053489 183 AGDA 186
Cdd:cd03249 169 ALDA 172
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
52-239 |
1.65e-10 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 60.63 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPIsSGTLKVTGTVRSLFDIG--------LGFEP---DATGRENIlyrg 120
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPEswrkhlswVGQNPqlpHGTLRDNV---- 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 121 lLLGlTPRFMREIEDEIIEFADLGDFI-------DYPIKTYSAGMQV----RLAFAISTAVDGDILLLDEVIGAGDAafm 189
Cdd:PRK11174 444 -LLG-NPDASDEQLQQALENAWVSEFLpllpqglDTPIGDQAAGLSVgqaqRLALARALLQPCQLLLLDEPTASLDA--- 518
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 190 tKAKARIMNMVEKAE-----IMVlaSHDLANVRQlCTRALVFKAGTIAFDGRVED 239
Cdd:PRK11174 519 -HSEQLVMQALNAASrrqttLMV--THQLEDLAQ-WDQIWVMQDGQIVQQGDYAE 569
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
42-231 |
1.69e-10 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 58.21 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 42 NIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFDIGLGFEPdatgrEN 115
Cdd:cd03215 9 GLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGkpvtrrSPRDAIRAGIAYVP-----ED 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 116 ILYRGLLLGLTprfmreIEDEIIefadLGDFIdypiktySAGMQVRLAFAISTAVDGDILLLDEV-----IGagdaafmt 190
Cdd:cd03215 84 RKREGLVLDLS------VAENIA----LSSLL-------SGGNQQKVVLARWLARDPRVLILDEPtrgvdVG-------- 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489053489 191 kAKARIMNMVE------KAEIMVlaSHDLANVRQLCTRALVFKAGTI 231
Cdd:cd03215 139 -AKAEIYRLIReladagKAVLLI--SSELDELLGLCDRILVMYEGRI 182
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
48-213 |
1.70e-10 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 60.45 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIGL-----GFEP------DATGRENi 116
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEvrrrvSVCAqdahlfDTTVREN- 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 117 lyrgLLLGlTPRFMREIEDEIIEFADLGDFI-------DYPI----KTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGD 185
Cdd:TIGR02868 429 ----LRLA-RPDATDEELWAALERVGLADWLralpdglDTVLgeggARLSGGERQRLALARALLADAPILLLDEPTEHLD 503
|
170 180 190
....*....|....*....|....*....|.
gi 489053489 186 AafmtKAKARIMNMVEKAE---IMVLASHDL 213
Cdd:TIGR02868 504 A----ETADELLEDLLAALsgrTVVLITHHL 530
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
48-179 |
1.77e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 59.72 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKV----TGTVRSLFDI----GLGFE-PD--------- 109
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVdgldTSDEENLWDIrnkaGMVFQnPDnqivative 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 110 ---ATGRENilyrgllLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PRK13633 105 edvAFGPEN-------LGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
49-211 |
1.85e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 58.81 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT---------VRSLFDIG--LGFEPDATGRENIL 117
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQsikkdlctyQKQLCFVGhrSGINPYLTLRENCL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 118 YRgllLGLTPRFMrEIeDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIM 197
Cdd:PRK13540 97 YD---IHFSPGAV-GI-TELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171
|
170
....*....|....
gi 489053489 198 NMVEKAEIMVLASH 211
Cdd:PRK13540 172 EHRAKGGAVLLTSH 185
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
48-235 |
2.37e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 59.41 E-value: 2.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG-------------TVRSlfDIGLGFE-PDATGR 113
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDitithktkdkyirPVRK--RIGMVFQfPESQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYRGLLLGltPRFMREIEDEIIEFA-----DLG---DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGD 185
Cdd:PRK13646 100 EDTVEREIIFG--PKNFKMNLDEVKNYAhrllmDLGfsrDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 186 AafmtKAKARIMNMVEKAEI-----MVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK13646 178 P----QSKRQVMRLLKSLQTdenktIILVSHDMNEVARYADEVIVMKEGSIVSQT 228
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
47-239 |
3.41e-10 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 58.32 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvrslfDI-----------GLGFEP------- 108
Cdd:cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ-----DItklpmhkrarlGIGYLPqeasifr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 109 DATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAF 188
Cdd:cd03218 89 KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 189 MTKAKARIMNMVEKAeIMVLAS-HdlaNVR---QLCTRALVFKAGTIAFDGRVED 239
Cdd:cd03218 169 VQDIQKIIKILKDRG-IGVLITdH---NVRetlSITDRAYIIYEGKVLAEGTPEE 219
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
48-245 |
3.78e-10 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 58.49 E-value: 3.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------------TVRSLF-DIGLGFE-----PD 109
Cdd:PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhfdfsktpsdkAIRELRrNVGMVFQqynlwPH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENILYRGL-LLGLTPRFMREIEDEIIEFADLGDFID-YPIKtYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAA 187
Cdd:PRK11124 97 LTVQQNLIEAPCrVLGLSKDQALARAEKLLERLRLKPYADrFPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 188 FMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGrveDAISFYN 245
Cdd:PRK11124 176 ITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG---DASCFTQ 230
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
44-242 |
4.27e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 58.55 E-value: 4.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV-----RSLFD----IGLGFE-PD---- 109
Cdd:PRK13639 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPikydkKSLLEvrktVGIVFQnPDdqlf 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 -ATGRENILYRGLLLGLTprfMREIED---EIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGD 185
Cdd:PRK13639 93 aPTVEEDVAFGPLNLGLS---KEEVEKrvkEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 186 AAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK13639 170 PMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
52-239 |
5.18e-10 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 58.02 E-value: 5.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPiSSGTLKVTGTVRSlfdiglgfepDATGRENILYRGLLL-------- 123
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLE----------AWSAAELARHRAYLSqqqtppfa 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 124 -------------GLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAG--MQVRLAFAI-----STAVDGDILLLDEVIGA 183
Cdd:PRK03695 84 mpvfqyltlhqpdKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGewQRVRLAAVVlqvwpDINPAGQLLLLDEPMNS 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 184 GDAAfMTKAKARIMNMVEKAEIMVL-ASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK03695 164 LDVA-QQAALDRLLSELCQQGIAVVmSSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
49-242 |
6.07e-10 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 58.10 E-value: 6.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvrSLFDIG-------LGFEP-------DATGRE 114
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK--PISMLSsrqlarrLALLPqhhltpeGITVRE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NILY-RGLLLGLTPRFM---REIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGD----A 186
Cdd:PRK11231 96 LVAYgRSPWLSLWGRLSaedNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDinhqV 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 187 AFMtkAKARIMNMVEKAEIMVLasHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK11231 176 ELM--RLMRELNTQGKTVVTVL--HDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
48-214 |
6.65e-10 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 58.84 E-value: 6.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvRSLFDIglgfePDATGRENILYRGLLLGLTP 127
Cdd:TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG--VPLADA-----DADSWRDQIAWVPQHPFLFA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 128 RFMRE---------IEDEIIE----------FADLGDFIDYPI----KTYSAGMQVRLAFAISTAVDGDILLLDEVIGAG 184
Cdd:TIGR02857 410 GTIAEnirlarpdaSDAEIREaleragldefVAALPQGLDTPIgeggAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489
|
170 180 190
....*....|....*....|....*....|...
gi 489053489 185 DA---AFMTKAKARIMNmvekAEIMVLASHDLA 214
Cdd:TIGR02857 490 DAeteAEVLEALRALAQ----GRTVLLVTHRLA 518
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
49-187 |
7.51e-10 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 58.67 E-value: 7.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF-----DIGLGfepdaTGRENILYrglll 123
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARPAGARVLFlpqrpYLPLG-----TLREALLY----- 448
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 124 gltPRFMREIEDEII----EFADLGDFIDYP------IKTYSAGMQVRLAFA--ISTAVdgDILLLDEVIGAGDAA 187
Cdd:COG4178 449 ---PATAEAFSDAELrealEAVGLGHLAERLdeeadwDQVLSLGEQQRLAFArlLLHKP--DWLFLDEATSALDEE 519
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
49-118 |
9.51e-10 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 56.01 E-value: 9.51e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIGLGFEPDATGRENILY 118
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY 86
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
48-186 |
9.78e-10 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 57.40 E-value: 9.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRS--LFDIGLGFEPDA-----TGRENILYrG 120
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEgpGAERGVVFQNEGllpwrNVQDNVAF-G 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 121 LLLGLTPRFMRE-IEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDA 186
Cdd:PRK11248 95 LQLAGVEKMQRLeIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
47-232 |
1.07e-09 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 58.11 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDI------GLGF--E--------PDA 110
Cdd:COG1129 266 GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPrdairaGIAYvpEdrkgeglvLDL 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 TGRENI-------LYRGLLlgLTPRFMREIEDEIIEfaDLG---DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE- 179
Cdd:COG1129 346 SIRENItlasldrLSRGGL--LDRRRERALAEEYIK--RLRiktPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEp 421
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 180 ---V-IGagdaafmtkAKARIMNMVE------KAEIMVlaSHDLANVRQLCTRALVFKAGTIA 232
Cdd:COG1129 422 trgIdVG---------AKAEIYRLIRelaaegKAVIVI--SSELPELLGLSDRILVMREGRIV 473
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
45-239 |
1.24e-09 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 57.50 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLFD---------IGLGFE-----PD 109
Cdd:PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQdLTALSEkelrkarrqIGMIFQhfnllSS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENIlyrGLLLGL--TPRfmREIE---DEIIEFADLGDFID-YPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGA 183
Cdd:PRK11153 97 RTVFDNV---ALPLELagTPK--AEIKarvTELLELVGLSDKADrYP-AQLSGGQKQRVAIARALASNPKVLLCDEATSA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 184 GDAAfMTKAkarIMNMVekAEI-------MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK11153 171 LDPA-TTRS---ILELL--KDInrelgltIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
52-100 |
1.31e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 57.89 E-value: 1.31e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV---------RSLF 100
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPvtadnreayRQLF 408
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
44-185 |
1.40e-09 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 56.47 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRslfDIGLG-------------FEPD 109
Cdd:cd03251 13 DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHdVR---DYTLAslrrqiglvsqdvFLFN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ATGRENILYrglllGLTPRFMREIEdEIIEFADLGDFIDYPIKTY-----------SAGMQVRLAFAISTAVDGDILLLD 178
Cdd:cd03251 90 DTVAENIAY-----GRPGATREEVE-EAARAANAHEFIMELPEGYdtvigergvklSGGQRQRIAIARALLKDPPILILD 163
|
....*..
gi 489053489 179 EVIGAGD 185
Cdd:cd03251 164 EATSALD 170
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
48-230 |
1.46e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 57.07 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLK-----------------------------VTGTVRs 98
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFynnqaitddnfeklrkhigivfqnpdnqfVGSIVK- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 99 lFDIGLGFEPDATGRENilyrglllgltprfMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLD 178
Cdd:PRK13648 103 -YDVAFGLENHAVPYDE--------------MHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489053489 179 EVIGAGDAafmtKAKARIMNMV-----EKAEIMVLASHDLANVRQ-----LCTRALVFKAGT 230
Cdd:PRK13648 168 EATSMLDP----DARQNLLDLVrkvksEHNITIISITHDLSEAMEadhviVMNKGTVYKEGT 225
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
41-106 |
1.50e-09 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 56.00 E-value: 1.50e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 41 ANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGL--YPISSGTLKVTG--------TVRSLFDIGLGF 106
Cdd:cd03217 8 VSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGeditdlppEERARLGIFLAF 83
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
45-239 |
1.59e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 56.73 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFDI----GLGFE-PD-----AT 111
Cdd:PRK13652 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGepiTKENIREVrkfvGLVFQnPDdqifsPT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTK 191
Cdd:PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489053489 192 AKARIMNMVEKAEIMVLAS-HDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK13652 176 LIDFLNDLPETYGMTVIFStHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
6-179 |
1.84e-09 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 57.29 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 6 ITLSNVHLHYAASAFkersvktlvnallsmrrsaganiedihALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPI 85
Cdd:PRK10522 323 LELRNVTFAYQDNGF---------------------------SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 86 SSGTLKVTG---------TVRSLF-----DIGL--------GFEPDATGRENILYRgllLGLTPRFmrEIEDEIIEFADL 143
Cdd:PRK10522 376 QSGEILLDGkpvtaeqpeDYRKLFsavftDFHLfdqllgpeGKPANPALVEKWLER---LKMAHKL--ELEDGRISNLKL 450
|
170 180 190
....*....|....*....|....*....|....*.
gi 489053489 144 gdfidypiktySAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PRK10522 451 -----------SKGQKKRLALLLALAEERDILLLDE 475
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
46-230 |
1.87e-09 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 56.29 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLfDIGlgfepDATGRENILYRGLLLGL 125
Cdd:COG4778 24 LPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGGWV-DLA-----QASPREILALRRRTIGY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 126 TPRFMREI-------------------EDEIIEFA--------------DLgdfidYPIkTYSAGMQVRLAFAISTAVDG 172
Cdd:COG4778 98 VSQFLRVIprvsaldvvaepllergvdREEARARArellarlnlperlwDL-----PPA-TFSGGEQQRVNIARGFIADP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489053489 173 DILLLDEVIGAGDAAfmtkAKARIMNMVEKAE----IMVLASHDLANVRQLCTRALVFKAGT 230
Cdd:COG4778 172 PLLLLDEPTASLDAA----NRAVVVELIEEAKargtAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
48-242 |
2.76e-09 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 55.96 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIG-LGFEPDATGRENILYRG-----L 121
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAwLRRQVGVVLQENVLFNRsirdnI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 122 LLGLTPRFMREIEdEIIEFADLGDFIDYPIKTY-----------SAGMQVRLAFAISTAVDGDILLLDEVIGAGDaafmT 190
Cdd:cd03252 97 ALADPGMSMERVI-EAAKLAGAHDFISELPEGYdtivgeqgaglSGGQRQRIAIARALIHNPRILIFDEATSALD----Y 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 191 KAKARIM-NM--VEKAEIMVLASHDLANVRQlCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:cd03252 172 ESEHAIMrNMhdICAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLA 225
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
48-236 |
4.44e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 56.07 E-value: 4.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFDIG-------LGFEPDATGRE 114
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGqemrfaSTTAALAAGvaiiyqeLHLVPEMTVAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NilyrgLLLGLTPR---FMRE---IEDEIIEFADLGDFID--YPIKTYSAGMQ--VRLAFAISTavDGDILLLDEVIGAG 184
Cdd:PRK11288 99 N-----LYLGQLPHkggIVNRrllNYEAREQLEHLGVDIDpdTPLKYLSIGQRqmVEIAKALAR--NARVIAFDEPTSSL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489053489 185 DAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKagtiafDGR 236
Cdd:PRK11288 172 SAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFK------DGR 217
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
48-239 |
4.55e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 55.51 E-value: 4.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD-----------IGLGFE-PDATGREN 115
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSkqkeikpvrkkVGVVFQfPESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 116 ILYRGLL-----LGLTPRFMREIEDEIIEFADLG-DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafm 189
Cdd:PRK13643 101 TVLKDVAfgpqnFGIPKEKAEKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP--- 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489053489 190 tKAKARIMNMVEK----AEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK13643 178 -KARIEMMQLFESihqsGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
45-148 |
4.64e-09 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 56.01 E-value: 4.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV--------RslfDIGLGFE-----PDAT 111
Cdd:PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVvnelepadR---DIAMVFQnyalyPHMS 92
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 489053489 112 GRENILYrglllGLTPRFM--REIEDEIIEFAD---LGDFID 148
Cdd:PRK11650 93 VRENMAY-----GLKIRGMpkAEIEERVAEAARileLEPLLD 129
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
20-239 |
4.67e-09 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 56.33 E-value: 4.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 20 FKERSVKTLVNALLSMRR-SAGANIEDIhaLKGISVDIARGERVALIGHNGAGKSTFLKTIAG-LYPISsgtlkvtGTVR 97
Cdd:PRK10636 300 FSFRAPESLPNPLLKMEKvSAGYGDRII--LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGeLAPVS-------GEIG 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 98 SLFDIGLGF---------EPDATGRENilyrglLLGLTPRFM-REIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAIS 167
Cdd:PRK10636 371 LAKGIKLGYfaqhqleflRADESPLQH------LARLAPQELeQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALI 444
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 168 TAVDGDILLLDEVIGAGDAAfMTKAKARIMNMVEKAeiMVLASHDLANVRQLCTRALVFKAGTIA-FDGRVED 239
Cdd:PRK10636 445 VWQRPNLLLLDEPTNHLDLD-MRQALTEALIDFEGA--LVVVSHDRHLLRSTTDDLYLVHDGKVEpFDGDLED 514
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
48-229 |
5.72e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 55.17 E-value: 5.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTI---AGLYP--ISSGTLKVTG---------TVRSLFDIGLGF-EPDA-- 110
Cdd:PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmNDLNPevTITGSIVYNGhniysprtdTVDLRKEIGMVFqQPNPfp 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 -TGRENILYRGLLLGLTPrfmREIEDEIIEFADLGDFIDYPIK--------TYSAGMQVRLAFAISTAVDGDILLLDEVI 181
Cdd:PRK14239 100 mSIYENVVYGLRLKGIKD---KQVLDEAVEKSLKGASIWDEVKdrlhdsalGLSGGQQQRVCIARVLATSPKIILLDEPT 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489053489 182 GAGDAAFMTKAKARIMNMVEKAeIMVLASHDLANVRQLCTRALVFKAG 229
Cdd:PRK14239 177 SALDPISAGKIEETLLGLKDDY-TMLLVTRSMQQASRISDRTGFFLDG 223
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
45-231 |
7.37e-09 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 54.40 E-value: 7.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD--------IGLGFEPDATGR--- 113
Cdd:cd03248 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEhkylhskvSLVGQEPVLFARslq 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYrglllGLTPRFMREIEdEIIEFADLGDFIDYPIKTY-----------SAGMQVRLAFAISTAVDGDILLLDEVIG 182
Cdd:cd03248 106 DNIAY-----GLQSCSFECVK-EAAQKAHAHSFISELASGYdtevgekgsqlSGGQKQRVAIARALIRNPQVLILDEATS 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489053489 183 AGDAAFMTKAKARIMNMVEKAEIMVLAsHDLANVRQlCTRALVFKAGTI 231
Cdd:cd03248 180 ALDAESEQQVQQALYDWPERRTVLVIA-HRLSTVER-ADQILVLDGGRI 226
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
49-179 |
7.76e-09 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 54.20 E-value: 7.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGL---YPISSGTLKVTGTVRS----LFDIGLG-----FEPDATGRENI 116
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRvegGGTTSGQILFNGQPRKpdqfQKCVAYVrqddiLLPGLTVRETL 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 117 LYRGLLLG--LTPRFMREIEDEIIEFADLGDFI--DYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:cd03234 103 TYTAILRLprKSSDAIRKKRVEDVLLRDLALTRigGNLVKGISGGERRRVSIAVQLLWDPKVLILDE 169
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
49-120 |
1.20e-08 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 52.99 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIG-----LGFEP------DATGRENIL 117
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNelgdhVGYLPqddelfSGSIAENIL 97
|
...
gi 489053489 118 YRG 120
Cdd:cd03246 98 SGG 100
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
45-231 |
1.73e-08 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 54.73 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFD-------IGL-GFEP---DATGR 113
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDhhylhrqVALvGQEPvlfSGSVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYrglllGLTPRFMREIEDEIIEfADLGDFIDYPIKTY-----------SAGMQVRLAFAISTAVDGDILLLDEVIG 182
Cdd:TIGR00958 573 ENIAY-----GLTDTPDEEIMAAAKA-ANAHDFIMEFPNGYdtevgekgsqlSGGQKQRIAIARALVRKPRVLILDEATS 646
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489053489 183 AGDAAFmtkAKARIMNMVEKAEIMVLASHDLANVRQlCTRALVFKAGTI 231
Cdd:TIGR00958 647 ALDAEC---EQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSV 691
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
49-239 |
1.96e-08 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 53.31 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPiSSGTLKVTGtvRSLfdiglgfePDATGRENILYRGLLL--GLT 126
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLLP-GQGEILLNG--RPL--------SDWSAAELARHRAYLSqqQSP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 127 PRFMR----------------EIEDEIIEFAD---LGDFIDYPIKTYSAGMQ--VRLAFA---ISTAV--DGDILLLDEV 180
Cdd:COG4138 81 PFAMPvfqylalhqpagasseAVEQLLAQLAEalgLEDKLSRPLTQLSGGEWqrVRLAAVllqVWPTInpEGQLLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489053489 181 IGAGDAAFMTKAKARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:COG4138 161 MNSLDVAQQAALDRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAE 219
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
47-244 |
2.02e-08 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 54.28 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYP---ISSGTLKVTGTVRSL------------FDIglgFEPDAT 111
Cdd:TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPkgvKGSGSVLLNGMPIDAkemraisayvqqDDL---FIPTLT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLL-LG--LTPRFMREIEDEIIEFADLGDFIDYPI------KTYSAGMQVRLAFAISTAVDGDILLLDEVIG 182
Cdd:TIGR00955 116 VREHLMFQAHLrMPrrVTKKEKRERVDEVLQALGLRKCANTRIgvpgrvKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489053489 183 AGDaAFMTKAKARIM-NMVEKAEIMVLASHD-LANVRQLCTRALVFKAGTIAFDGRVEDAISFY 244
Cdd:TIGR00955 196 GLD-SFMAYSVVQVLkGLAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQAVPFF 258
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
51-211 |
2.50e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 52.50 E-value: 2.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 51 GISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvrslfdiglgfEPDATGRE----NILYRGLLLG-- 124
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG------------EPIRRQRDeyhqDLLYLGHQPGik 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 125 --LTP----RFM----REIEDEIIEFA----DLGDFIDYPIKTYSAGMQVRLAFA---ISTAVdgdILLLDEVIGAGDAA 187
Cdd:PRK13538 87 teLTAlenlRFYqrlhGPGDDEALWEAlaqvGLAGFEDVPVRQLSAGQQRRVALArlwLTRAP---LWILDEPFTAIDKQ 163
|
170 180
....*....|....*....|....
gi 489053489 188 FMTKAKARIMNMVEKAEIMVLASH 211
Cdd:PRK13538 164 GVARLEALLAQHAEQGGMVILTTH 187
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
55-226 |
3.07e-08 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 52.80 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 55 DIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVtgtvrSLFDIGLG---FEPDATGRenilYRGLLLGLTPRFMR 131
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-----ELDTVSYKpqyIKADYEGT----VRDLLSSITKDFYT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 132 E--IEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEvigagDAAFM--------TKAKAR-IMNmv 200
Cdd:cd03237 92 HpyFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDE-----PSAYLdveqrlmaSKVIRRfAEN-- 164
|
170 180
....*....|....*....|....*.
gi 489053489 201 EKAEIMVLaSHDLANVRQLCTRALVF 226
Cdd:cd03237 165 NEKTAFVV-EHDIIMIDYLADRLIVF 189
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
49-229 |
3.51e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 52.91 E-value: 3.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG-------TVRSLFDI----GLGFE-PDATGRENI 116
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGyhitpetGNKNLKKLrkkvSLVFQfPEAQLFENT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 117 LYRGLLLGltPRFMREIEDEIIEFA-----DLG---DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEViGAGDAAF 188
Cdd:PRK13641 103 VLKDVEFG--PKNFGFSEDEAKEKAlkwlkKVGlseDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP-AAGLDPE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489053489 189 MTKAKARIMNMVEKA-EIMVLASHDLANVRQLCTRALVFKAG 229
Cdd:PRK13641 180 GRKEMMQLFKDYQKAgHTVILVTHNMDDVAEYADDVLVLEHG 221
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
48-239 |
3.64e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 53.10 E-value: 3.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV-------RSLFDI----GLGFE-PDA----- 110
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVitagkknKKLKPLrkkvGIVFQfPEHqlfee 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 TGRENILYRGLLLGLTPRFMREIEDEIIEFADLG-DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafm 189
Cdd:PRK13634 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPeELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP--- 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 190 tKAKARIMNMV-----EKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK13634 179 -KGRKEMMEMFyklhkEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
45-231 |
3.83e-08 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 52.62 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVT---GTVRSLFDIGL----------------- 104
Cdd:PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRmrdGQLRDLYALSEaerrrllrtewgfvhqh 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 105 ---GFEPDATGRENILYRglLLGLTPRFMREIEDEIIEFADL----GDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLL 177
Cdd:PRK11701 98 prdGLRMQVSAGGNIGER--LMAVGARHYGDIRATAGDWLERveidAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489053489 178 DEVIGAGDAAfmtkAKARIMNMV-----EKAEIMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:PRK11701 176 DEPTGGLDVS----VQARLLDLLrglvrELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
56-227 |
4.76e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 53.27 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 56 IARGERVALIGHNGAGKSTFLKTIAG-LYPISsgtlkvtGTVrsLFDIGLGFEP-------DATGREnilyrgLLLGLTP 127
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGvLKPDE-------GEV--DPELKISYKPqyikpdyDGTVED------LLRSITD 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 128 RFMRE-IEDEIIEFADLGDFIDYPIKTYSAG-MQvRLAFAISTAVDGDILLLDEvigagDAAFM--------TKAKARIM 197
Cdd:PRK13409 427 DLGSSyYKSEIIKPLQLERLLDKNVKDLSGGeLQ-RVAIAACLSRDADLYLLDE-----PSAHLdveqrlavAKAIRRIA 500
|
170 180 190
....*....|....*....|....*....|
gi 489053489 198 NMVEKAEIMVlaSHDLANVRQLCTRALVFK 227
Cdd:PRK13409 501 EEREATALVV--DHDIYMIDYISDRLMVFE 528
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
45-179 |
6.01e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 53.20 E-value: 6.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvrslfDI------------------GLG- 105
Cdd:NF033858 13 KTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGG-----DMadarhrravcpriaympqGLGk 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 106 -FEPDATGRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:NF033858 88 nLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDE 162
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
45-231 |
6.30e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 52.32 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLK------------TIAGLYPISSGTLKVTGTVRSLFDIGLGFE-PD-- 109
Cdd:PRK13645 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQltngliisetgqTIVGDYAIPANLKKIKEVKRLRKEIGLVFQfPEyq 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 ---ATGRENILYRGLLLGLTPRfmrEIEDEIIEFADL----GDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIG 182
Cdd:PRK13645 103 lfqETIEKDIAFGPVNLGENKQ---EAYKKVPELLKLvqlpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489053489 183 AGDAafmtKAKARIMNMVEK-----AEIMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:PRK13645 180 GLDP----KGEEDFINLFERlnkeyKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
49-235 |
6.33e-08 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 52.10 E-value: 6.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRS-----LFDIGLGFEPDA-TGRENILYRGLL 122
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLEswsskAFARKVAYLPQQlPAAEGMTVRELV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 -LGLTP------RFM---REIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKA 192
Cdd:PRK10575 107 aIGRYPwhgalgRFGaadREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDV 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489053489 193 KARIMNMVEKAEIMVLAS-HDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK10575 187 LALVHRLSQERGLTVIAVlHDINMAARYCDYLVALRGGEMIAQG 230
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
48-117 |
7.01e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 51.32 E-value: 7.01e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrslfdiglGF---EP---DATGRENIL 117
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI--------AYvsqEPwiqNGTIRENIL 87
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
41-107 |
7.52e-08 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 51.95 E-value: 7.52e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 41 ANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAG--LYPISSGTLKVTGT--------VRSLFDIGLGFE 107
Cdd:CHL00131 15 ASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGEsildlepeERAHLGIFLAFQ 91
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
48-179 |
7.78e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.09 E-value: 7.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLFDI---GLGFEPD-------ATGRENI 116
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKdIETNLDAvrqSLGMCPQhnilfhhLTVAEHI 1024
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 117 LYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:TIGR01257 1025 LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
43-212 |
8.62e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 51.59 E-value: 8.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 43 IEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV----RSLF---------DIGLGFE-- 107
Cdd:PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVlyfgKDIFqidaiklrkEVGMVFQqp 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 ---PDATGRENILYRGLLLGLT-PRFMREIEDEIIE----FADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PRK14246 100 npfPHLSIYDNIAYPLKSHGIKeKREIKKIVEECLRkvglWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE 179
|
170 180 190
....*....|....*....|....*....|...
gi 489053489 180 VIGAGDAAfMTKAKARIMNMVEKAEIMVLASHD 212
Cdd:PRK14246 180 PTSMIDIV-NSQAIEKLITELKNEIAIVIVSHN 211
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
49-239 |
8.81e-08 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 51.75 E-value: 8.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYP--ISSGTLKVTGtvrslfDIGLGFEP----DAT----------- 111
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTggGAPRGARVTG------DVTLNGEPlaaiDAPrlarlravlpq 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 ----------------GRENILYRGlllGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAI--------- 166
Cdd:PRK13547 91 aaqpafafsareivllGRYPHARRA---GALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARvlaqlwpph 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489053489 167 STAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVLA-SHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAiVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
48-94 |
8.99e-08 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 51.34 E-value: 8.99e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG 65
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
49-239 |
1.68e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.43 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRslfdIGL-------GFEPDATgrenilyrgl 121
Cdd:PRK15064 335 FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENAN----IGYyaqdhayDFENDLT---------- 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 122 LLGLTPRFMREIEDEIIEFADLG------DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDaafMTKAKAr 195
Cdd:PRK15064 401 LFDWMSQWRQEGDDEQAVRGTLGrllfsqDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD---MESIES- 476
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489053489 196 iMNM-VEKAE-IMVLASHDLANVRQLCTRALVFKA-GTIAFDGRVED 239
Cdd:PRK15064 477 -LNMaLEKYEgTLIFVSHDREFVSSLATRIIEITPdGVVDFSGTYEE 522
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
42-95 |
1.93e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 51.49 E-value: 1.93e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 489053489 42 NIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVtGT 95
Cdd:PRK11147 328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
45-239 |
2.52e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 50.89 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGK------STFLKTIAGLYPISSGTL-----KVTGTVRSLFDIGLGFEPDATGR 113
Cdd:NF000106 25 EVKAVDGVDLDVREGTVLGVLGP*GAA**rgalpAHV*GPDAGRRPWRF*TWcanrrALRRTIG*HRPVR*GRRESFSGR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAK 193
Cdd:NF000106 105 ENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVW 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489053489 194 ARIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:NF000106 185 DEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDE 230
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
32-84 |
2.86e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 50.70 E-value: 2.86e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 32 LLSMRrsagaNI----EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYP 84
Cdd:PRK13549 5 LLEMK-----NItktfGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
48-235 |
3.60e-07 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 50.01 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLY-----PISSGTL---------KVTGTVR-SLFDIGLGFEP-DAT 111
Cdd:PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdksAGSHIELlgrtvqregRLARDIRkSRANTGYIFQQfNLV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLL--LGLTP-------RFMREIEDEIIEF---ADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PRK09984 99 NRLSVLENVLIgaLGSTPfwrtcfsWFTREQKQRALQAltrVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 180 VIGAGD--AAFMTKAKARIMNMVEKAEImVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK09984 179 PIASLDpeSARIVMDTLRDINQNDGITV-VVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
63-242 |
3.99e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 49.71 E-value: 3.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 63 ALIGHNGAGKSTFLKTIAGLYPISSGtLKVTGTV----RSLFD----------IGLGFE-PDA---TGRENILYRGLLLG 124
Cdd:PRK14271 51 SLMGPTGSGKTTFLRTLNRMNDKVSG-YRYSGDVllggRSIFNyrdvlefrrrVGMLFQrPNPfpmSIMDNVLAGVRAHK 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 125 LTPRF-MREIEDEIIEFADLGDFI-----DYPIKtYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMN 198
Cdd:PRK14271 130 LVPRKeFRGVAQARLTEVGLWDAVkdrlsDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489053489 199 MVEKAEIMVLaSHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK14271 209 LADRLTVIIV-THNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
31-133 |
4.94e-07 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 50.07 E-value: 4.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 31 ALLSMRR---SAGANIEDIHALKGISVDIARGERVALIGHNGAGKS-TFLkTIAGLYPisSGTLKVTGTVRslFDiglgf 106
Cdd:COG4172 5 PLLSVEDlsvAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTAL-SILRLLP--DPAAHPSGSIL--FD----- 74
|
90 100
....*....|....*....|....*..
gi 489053489 107 epdatGREnilyrglLLGLTPRFMREI 133
Cdd:COG4172 75 -----GQD-------LLGLSERELRRI 89
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
49-185 |
5.14e-07 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 5.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFDiGLGFEP------DATGRENI 116
Cdd:cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGqdirevTLDSLRR-AIGVVPqdtvlfNDTIGYNI 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 117 LYRGllLGLTPRFMRE------IEDEIIEFADLGDFIDYPIKTY-SAGMQVRLAFAISTAVDGDILLLDEVIGAGD 185
Cdd:cd03253 96 RYGR--PDATDEEVIEaakaaqIHDKIMRFPDGYDTIVGERGLKlSGGEKQRVAIARAILKNPPILLLDEATSALD 169
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
48-231 |
5.21e-07 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 49.96 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLFDIGLgfepdatgRENI--LYRGLLLg 124
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTdIRTVTRASL--------RRNIavVFQDAGL- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 125 ltprFMREIEDEI---------------IEFADLGDFIDYPIKTY-----------SAGMQVRLAFAISTAVDGDILLLD 178
Cdd:PRK13657 421 ----FNRSIEDNIrvgrpdatdeemraaAERAQAHDFIERKPDGYdtvvgergrqlSGGERQRLAIARALLKDPPILILD 496
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489053489 179 EVIGAGDAAFMTKAKARIMNMVEKAEIMVLAsHDLANVRQlCTRALVFKAGTI 231
Cdd:PRK13657 497 EATSALDVETEAKVKAALDELMKGRTTFIIA-HRLSTVRN-ADRILVFDNGRV 547
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
48-235 |
5.44e-07 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 49.95 E-value: 5.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG--------------TV---RSLFdiglgfePDA 110
Cdd:PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGqdithvpaenrhvnTVfqsYALF-------PHM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 111 TGRENILYrGLLLGLTPRfmREIEDEIIE---FADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAA 187
Cdd:PRK09452 102 TVFENVAF-GLRMQKTPA--AEITPRVMEalrMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489053489 188 FMTKAKARIMNMVEKAEI-MVLASHDLANVRQLCTRALVFKAGTIAFDG 235
Cdd:PRK09452 179 LRKQMQNELKALQRKLGItFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
55-227 |
6.01e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 49.78 E-value: 6.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 55 DIARGERVALIGHNGAGKSTFLKTIAGLYPISSGtlKVTGTVRslfdigLGF-----EPDATGR-ENILYRglllGLTPR 128
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEG--EVDEDLK------ISYkpqyiSPDYDGTvEEFLRS----ANTDD 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 129 FMREI-EDEIIEFADLGDFIDYPIKTYSAG-MQvRLAFAISTAVDGDILLLDEvigagDAAF------MTKAKArIMNMV 200
Cdd:COG1245 430 FGSSYyKTEIIKPLGLEKLLDKNVKDLSGGeLQ-RVAIAACLSRDADLYLLDE-----PSAHldveqrLAVAKA-IRRFA 502
|
170 180
....*....|....*....|....*....
gi 489053489 201 E--KAEIMVLaSHDLANVRQLCTRALVFK 227
Cdd:COG1245 503 EnrGKTAMVV-DHDIYLIDYISDRLMVFE 530
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
49-187 |
9.00e-07 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 48.70 E-value: 9.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvRSLFDIGLGFEPDATGRENILYrglllGLTPR 128
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSWIMPGTIKENIIF-----GVSYD 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489053489 129 FMR--------EIEDEIIEFADLgdfiDYPIK-----TYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAA 187
Cdd:cd03291 126 EYRyksvvkacQLEEDITKFPEK----DNTVLgeggiTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 193
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
47-229 |
1.93e-06 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 47.56 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF----------DIGLGFEP-----DAT 111
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLknrevpflrrQIGMIFQDhhllmDRT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFI-DYPIKtYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAfMT 190
Cdd:PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAkNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA-LS 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489053489 191 KAKARIMNMVEKAEIMVL-ASHDLANVRQLCTRALVFKAG 229
Cdd:PRK10908 174 EGILRLFEEFNRVGVTVLmATHDIGLISRRSYRMLTLSDG 213
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
28-94 |
2.09e-06 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 47.57 E-value: 2.09e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489053489 28 LVNALLSMRRSAgANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:PRK11614 1 MEKVMLSFDKVS-AHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG 66
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
50-97 |
2.27e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 48.19 E-value: 2.27e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489053489 50 KGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVR 97
Cdd:PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVK 388
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
49-238 |
2.41e-06 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 47.36 E-value: 2.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLkVTGT-----VRSlfDIGLGFEpDATgrenilyrgLL- 122
Cdd:PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTaplaeARE--DTRLMFQ-DAR---------LLp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 ---------LGLTPRFmREIEDEIIEFADLGDFI-DYPiKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKA 192
Cdd:PRK11247 95 wkkvidnvgLGLKGQW-RDAALQALAAVGLADRAnEWP-AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489053489 193 KARIMNMVEKAEIMV-LASHDLANVRQLCTRALVFKAGTIAFDGRVE 238
Cdd:PRK11247 173 QDLIESLWQQHGFTVlLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
47-179 |
2.61e-06 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 46.88 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPissgTLKVTGTVRSLFDIglgFEPDATGRENILYRGLLLGLT 126
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALK----GTPVAGCVDVPDNQ---FGREASLIDAIGRKGDFKDAV 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 127 prfmreiedEIIEFADLGDFIDY--PIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:COG2401 117 ---------ELLNAVGLSDAVLWlrRFKELSTGQKFRFRLALLLAERPKLLVIDE 162
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
48-96 |
2.75e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 47.43 E-value: 2.75e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTV 96
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTL 70
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
6-246 |
3.51e-06 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 47.57 E-value: 3.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 6 ITLSNVHLHYAASAFKERSVKTLVNALLSMRRSAGANIEDIHA---LKGISVDIARGERVALIGHNGAGKSTFLKTIAGL 82
Cdd:PLN03211 38 ITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQErtiLNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 83 YPISSGTLKVTGTVRSLFDIGL---GF-------EPDATGRENILYRGLLL---GLTPRFMREIEDEIIE---FADLGDF 146
Cdd:PLN03211 118 IQGNNFTGTILANNRKPTKQILkrtGFvtqddilYPHLTVRETLVFCSLLRlpkSLTKQEKILVAESVISelgLTKCENT 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 147 I--DYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVLASHDLAN-VRQLCTRA 223
Cdd:PLN03211 198 IigNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSrVYQMFDSV 277
|
250 260
....*....|....*....|...
gi 489053489 224 LVFKAGTIAFDGRVEDAISFYNS 246
Cdd:PLN03211 278 LVLSEGRCLFFGKGSDAMAYFES 300
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
58-214 |
3.59e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 47.47 E-value: 3.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 58 RGERVALIGHNGAGKSTFLKTIAG------------------------------LYPISSGTLKV--------------T 93
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGelkpnlgdydeepswdevlkrfrgtelqdyFKKLANGEIKVahkpqyvdlipkvfK 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 94 GTVRSLFdiglgfepdatgrENILYRGLLlgltprfmreieDEIIEFADLGDFIDYPIKTYSAG-MQvRLAFAISTAVDG 172
Cdd:COG1245 178 GTVRELL-------------EKVDERGKL------------DELAEKLGLENILDRDISELSGGeLQ-RVAIAAALLRDA 231
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489053489 173 DILLLDEVigagdAAF------MTKAKArIMNMVEKAEIMVLASHDLA 214
Cdd:COG1245 232 DFYFFDEP-----SSYldiyqrLNVARL-IRELAEEGKYVLVVEHDLA 273
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
49-178 |
3.68e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 47.60 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGtvRSLFDIGLGFEPDATGRENILYrglllGLTPR 128
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSWIMPGTIKDNIIF-----GLSYD 514
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489053489 129 FMR--------EIEDEIIEFAD-----LGDfidyPIKTYSAGMQVRLAFAISTAVDGDILLLD 178
Cdd:TIGR01271 515 EYRytsvikacQLEEDIALFPEkdktvLGE----GGITLSGGQRARISLARAVYKDADLYLLD 573
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
66-180 |
3.90e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 46.02 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 66 GHNGAGKSTFLKTIAGLYPISSGTLKV----TGTVRSLF--DIG--LGFEPDATGRENIlyrglllgltpRFMREIEDEI 137
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYkncnINNIAKPYctYIGhnLGLKLEMTVFENL-----------KFWSEIYNSA 101
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 489053489 138 ------IEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEV 180
Cdd:PRK13541 102 etlyaaIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
52-242 |
3.94e-06 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 46.81 E-value: 3.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDI------GLGFEPDATG--RENILYRGLLL 123
Cdd:PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLhararrGIGYLPQEASifRRLSVYDNLMA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 124 ------GLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIM 197
Cdd:PRK10895 102 vlqirdDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489053489 198 NMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK10895 182 HLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
48-231 |
4.68e-06 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 46.95 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLFD----------IGLGFE-----PDAT 111
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVdIAKISDaelrevrrkkIAMVFQsfalmPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 112 GRENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTK 191
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489053489 192 AKARIMNMVEKAE-IMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:PRK10070 203 MQDELVKLQAKHQrTIVFISHDLDEAMRIGDRIAIMQNGEV 243
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
3-95 |
5.11e-06 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 47.13 E-value: 5.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 3 QPSITLSNVHLHYAASAFkersvktlvnallsmrrsaganiediHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGL 82
Cdd:PRK11160 336 QVSLTLNNVSFTYPDQPQ--------------------------PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 389
|
90
....*....|...
gi 489053489 83 YPISSGTLKVTGT 95
Cdd:PRK11160 390 WDPQQGEILLNGQ 402
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
32-84 |
5.22e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 47.13 E-value: 5.22e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 489053489 32 LLSMRRSAgANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYP 84
Cdd:TIGR02633 1 LLEMKGIV-KTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
51-179 |
7.66e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 46.78 E-value: 7.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 51 GISVDiargERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVR-SLFD------IGLGFEPdatgrenILYRGLLL 123
Cdd:PLN03073 531 GIDLD----SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRmAVFSqhhvdgLDLSSNP-------LLYMMRCF 599
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 489053489 124 GLTPRfmREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PLN03073 600 PGVPE--QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
49-232 |
8.27e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.86 E-value: 8.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFlktIAGLYPI---SSGTLKVTGTvrSLFDIGLG---FEPDATGRENILYRGLL 122
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSL---TLGLFRInesAEGEIIIDGL--NIAKIGLHdlrFKITIIPQDPVLFSGSL 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 -LGLTPrFMREIEDEI---IEFADLGDFID-YPIK----------TYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAA 187
Cdd:TIGR00957 1377 rMNLDP-FSQYSDEEVwwaLELAHLKTFVSaLPDKldhecaeggeNLSVGQRQLVCLARALLRKTKILVLDEATAAVDLE 1455
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489053489 188 FMTKAKARIMNMVEKAEIMVLAsHDLANVRQLcTRALVFKAGTIA 232
Cdd:TIGR00957 1456 TDNLIQSTIRTQFEDCTVLTIA-HRLNTIMDY-TRVIVLDKGEVA 1498
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
59-179 |
8.32e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 45.61 E-value: 8.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 59 GERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG-----TVRSLFDIGL----GFEPDATGRENILYrglLLGLTPRF 129
Cdd:PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGktatrGDRSRFMAYLghlpGLKADLSTLENLHF---LCGLHGRR 113
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 489053489 130 MREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PRK13543 114 AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
49-97 |
9.75e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 46.08 E-value: 9.75e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVR 97
Cdd:TIGR03719 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETVK 386
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
46-87 |
1.01e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 45.94 E-value: 1.01e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISS 87
Cdd:NF040905 14 VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGS 55
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
56-90 |
1.02e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 46.10 E-value: 1.02e-05
10 20 30
....*....|....*....|....*....|....*
gi 489053489 56 IARGERVALIGHNGAGKSTFLKTIAGLYPISSGTL 90
Cdd:PRK11147 26 IEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI 60
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
45-211 |
1.67e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 44.90 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKT---IAGLYPISsgtlKVTGTV----RSLFDIGLG---------FE- 107
Cdd:PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrLIELYPEA----RVSGEVyldgQDIFKMDVIelrrrvqmvFQi 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 ----PDATGRENILYrGLLLGLTPRFMREIEDEI---IEFADL----GDFIDYPIKTYSAGMQVRLAFAISTAVDGDILL 176
Cdd:PRK14247 91 pnpiPNLSIFENVAL-GLKLNRLVKSKKELQERVrwaLEKAQLwdevKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169
|
170 180 190
....*....|....*....|....*....|....*
gi 489053489 177 LDEVIGAGDAAFMTKAKARIMNMvEKAEIMVLASH 211
Cdd:PRK14247 170 ADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTH 203
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
49-94 |
1.68e-05 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 45.58 E-value: 1.68e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDG 419
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
49-179 |
1.84e-05 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 44.72 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRslfdigLGFEPDAtgreniLYRGLLLGLT-P 127
Cdd:PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLR------IGYVPQK------LYLDTTLPLTvN 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 489053489 128 RFMR----EIEDEI---IEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PRK09544 88 RFLRlrpgTKKEDIlpaLKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
47-214 |
1.97e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 44.45 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTlKVTGTVRsLF----------------DIGLGFE--- 107
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEA-RVEGEVR-LFgrniyspdvdpievrrEVGMVFQypn 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 108 --PDATGRENILYrGLLLGLTPRFMREIeDEIIEFA----DLGDFI-----DYPiKTYSAGMQVRLAFAISTAVDGDILL 176
Cdd:PRK14267 96 pfPHLTIYDNVAI-GVKLNGLVKSKKEL-DERVEWAlkkaALWDEVkdrlnDYP-SNLSGGQRQRLVIARALAMKPKILL 172
|
170 180 190
....*....|....*....|....*....|....*...
gi 489053489 177 LDEVIGAGDAAFMTKAKARIMNMVEKAEImVLASHDLA 214
Cdd:PRK14267 173 MDEPTANIDPVGTAKIEELLFELKKEYTI-VLVTHSPA 209
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
48-94 |
2.19e-05 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 44.99 E-value: 2.19e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG 65
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
35-95 |
2.33e-05 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 45.06 E-value: 2.33e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 35 MRRSAGanieDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPiSSGTLKVTGT 95
Cdd:COG4172 292 FRRTVG----HVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQ 347
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
49-94 |
3.18e-05 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 44.71 E-value: 3.18e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
48-185 |
3.58e-05 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 44.62 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFD--------IGLgFepDATGR 113
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGhdlrdyTLASLRNqvalvsqnVHL-F--NDTIA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 114 ENILYrglllGLTPRFMREiedEIIEFADLG---DFI---DYPIKT--------YSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:PRK11176 435 NNIAY-----ARTEQYSRE---QIEEAARMAyamDFInkmDNGLDTvigengvlLSGGQRQRIAIARALLRDSPILILDE 506
|
....*.
gi 489053489 180 VIGAGD 185
Cdd:PRK11176 507 ATSALD 512
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
50-242 |
3.58e-05 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 43.82 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 50 KGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLF-------DIGLgFEPDATGRENILYRGLL 122
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYaskevarRIGL-LAQNATTPGDITVQELV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 L-GLTP------RFMREIEDEI---IEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKA 192
Cdd:PRK10253 103 ArGRYPhqplftRWRKEDEEAVtkaMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489053489 193 KARIMNM-VEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFDGRVEDAIS 242
Cdd:PRK10253 183 LELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
49-179 |
4.40e-05 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 42.92 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGL--YPISSGTLKVTGTVRSLFDIG--LGFEPdatgRENILYrgllLG 124
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLINGRPLDKRSFRkiIGYVP----QDDILH----PT 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 125 LTPRfmreiedEIIEFADLgdfidypIKTYSAGMQVRLAFAISTAVDGDILLLDE 179
Cdd:cd03213 97 LTVR-------ETLMFAAK-------LRGLSGGERKRVSIALELVSNPSLLFLDE 137
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
52-97 |
4.76e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.11 E-value: 4.76e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAG-LYPiSSGTLKVTGTVR 97
Cdd:PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGdLEP-SAGNVSLDPNER 65
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
49-186 |
5.69e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 44.17 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrslfdiglGFEP------DATGRENILYRGll 122
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV--------AYVPqqawiqNDSLRENILFGK-- 723
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 123 lGLTPRFMREIEDEIIEFADL-----GDFIDYPIK--TYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDA 186
Cdd:TIGR00957 724 -ALNEKYYQQVLEACALLPDLeilpsGDRTEIGEKgvNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
49-239 |
7.39e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 43.61 E-value: 7.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGtlkvtgtvRSLFDIGLGFEP------DATGRENILYrgll 122
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG--------RVWAERSIAYVPqqawimNATVRGNILF---- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 lgLTPRFMREIEDEI------IEFADLGDFIDYPIK----TYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAafmtKA 192
Cdd:PTZ00243 744 --FDEEDAARLADAVrvsqleADLAQLGGGLETEIGekgvNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA----HV 817
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489053489 193 KARIMNMV----EKAEIMVLASHDLaNVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PTZ00243 818 GERVVEECflgaLAGKTRVLATHQV-HVVPRADYVVALGDGRVEFSGSSAD 867
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
30-212 |
1.04e-04 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 42.39 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 30 NALLSMRRsAGANIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvrslfDIgLGFEPD 109
Cdd:PRK10247 5 SPLLQLQN-VGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-----DI-STLKPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 110 A-----------------TGRENILYRGLLLGLTPRfMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDG 172
Cdd:PRK10247 78 IyrqqvsycaqtptlfgdTVYDNLIFPWQIRNQQPD-PAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489053489 173 DILLLDEVIGAGDAAFMTKAKARIMNMVEKAEIMVL-ASHD 212
Cdd:PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLwVTHD 197
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
48-232 |
1.16e-04 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 42.01 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 48 ALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIG-----LGFEPdatgRENILYRGLL 122
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEdlrssLTIIP----QDPTLFSGTI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 123 LGLTPRFMREIEDEI---IEFADLGDfidypikTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDAAFMTKAKARIMNM 199
Cdd:cd03369 99 RSNLDPFDEYSDEEIygaLRVSEGGL-------NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171
|
170 180 190
....*....|....*....|....*....|...
gi 489053489 200 VEKAEIMVLAsHDLANVRQlCTRALVFKAGTIA 232
Cdd:cd03369 172 FTNSTILTIA-HRLRTIID-YDKILVMDAGEVK 202
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
33-240 |
1.46e-04 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 42.71 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 33 LSMRRSAGAniediHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFDIGLGF 106
Cdd:COG3845 263 LSVRDDRGV-----PALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGeditglSPRERRRLGVAY 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 107 --E--------PDATGRENIL---YRGLLLG----LTPRFMREIEDEIIEfadlgDF------IDYPIKTYSAG-MQ-VR 161
Cdd:COG3845 338 ipEdrlgrglvPDMSVAENLIlgrYRRPPFSrggfLDRKAIRAFAEELIE-----EFdvrtpgPDTPARSLSGGnQQkVI 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 162 LAFAISTavDGDILL-------LDevIGAgdAAFMTKakaRIMNMVEKAEIMVLASHDLANVRQLCTRALVFKAGTIAFD 234
Cdd:COG3845 413 LARELSR--DPKLLIaaqptrgLD--VGA--IEFIHQ---RLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGE 483
|
....*.
gi 489053489 235 GRVEDA 240
Cdd:COG3845 484 VPAAEA 489
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
42-94 |
1.67e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 41.70 E-value: 1.67e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 42 NIEDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGL--YPISSGTLKVTG 94
Cdd:PRK09580 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKG 64
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
35-238 |
1.74e-04 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 42.38 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 35 MRRSAGANiediHALKGISVDIARGERVALIGHNGAGKST----FLKTIAglypiSSGTLKVTGTVRSLFD--------- 101
Cdd:PRK15134 292 LKRTVDHN----VVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQPLHNLNrrqllpvrh 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 102 -IGLGFE-PDAT-----GRENILYRGLLLGLTPRFMREIEDEIIE-FADLGdfID------YPIKtYSAGMQVRLAFAIS 167
Cdd:PRK15134 363 rIQVVFQdPNSSlnprlNVLQIIEEGLRVHQPTLSAAQREQQVIAvMEEVG--LDpetrhrYPAE-FSGGQRQRIAIARA 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 168 TAVDGDILLLDEVIGAGDAAfmtkAKARIMNMVEK-------AEIMVlaSHDLANVRQLCTRALVFKAGTIAFDGRVE 238
Cdd:PRK15134 440 LILKPSLIILDEPTSSLDKT----VQAQILALLKSlqqkhqlAYLFI--SHDLHVVRALCHQVIVLRQGEVVEQGDCE 511
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
35-232 |
1.80e-04 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 42.35 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 35 MRRSAGANIEDIHALKG-----ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG------TVRSLFDIG 103
Cdd:PRK15439 260 RQQAAGAPVLTVEDLTGegfrnISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGkeinalSTAQRLARG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 104 LGFEP----------DATGRENILyrGLLLGLTPRFMREIEDEI----------IEFADlgdfIDYPIKTYSAGMQVRLA 163
Cdd:PRK15439 340 LVYLPedrqssglylDAPLAWNVC--ALTHNRRGFWIKPARENAvleryrralnIKFNH----AEQAARTLSGGNQQKVL 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 164 FAISTAVDGDILLLDEVIGAGDAAfmtkAKARIMNMVEK------AEIMVlaSHDLANVRQLCTRALVFKAGTIA 232
Cdd:PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVS----ARNDIYQLIRSiaaqnvAVLFI--SSDLEEIEQMADRVLVMHQGEIS 482
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
44-228 |
2.81e-04 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 41.71 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGL--YPISSGtlkvtgtvRSLFDIGLGFEPDATGRENILYRGl 121
Cdd:TIGR03269 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSG--------RIIYHVALCEKCGYVERPSKVGEP- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 122 llglTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRlAFAI---STAVDGDILLLDEVIGAGDAAfMTKAkARIMN 198
Cdd:TIGR03269 82 ----CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR-TFALygdDTVLDNVLEALEEIGYEGKEA-VGRA-VDLIE 154
|
170 180 190
....*....|....*....|....*....|....*...
gi 489053489 199 MVEKAEIMVLASHDLAN--------VRQLCTRALVFKA 228
Cdd:TIGR03269 155 MVQLSHRITHIARDLSGgekqrvvlARQLAKEPFLFLA 192
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
49-221 |
3.67e-04 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 40.30 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGL--------------YPISSGTLKVTGTVRSLfDIglgFEPDATGRE 114
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRktagvitgeilingRPLDKNFQRSTGYVEQQ-DV---HSPNLTVRE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 115 NILYRGLLLGLTPRFMReiedeiiefadlgdfidypiktysagmqvRLAFAISTAVDGDILLLDEVIGAGDAafmtKAKA 194
Cdd:cd03232 99 ALRFSALLRGLSVEQRK-----------------------------RLTIGVELAAKPSILFLDEPTSGLDS----QAAY 145
|
170 180
....*....|....*....|....*..
gi 489053489 195 RIMNMVEKaeimvLASHDLAnvrQLCT 221
Cdd:cd03232 146 NIVRFLKK-----LADSGQA---ILCT 164
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
49-186 |
4.19e-04 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 40.57 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRS---------LFDIGLGF-------EPDATG 112
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSklssaakaeLRNQKLGFiyqfhhlLPDFTA 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489053489 113 RENILYRGLLLGLTPRFMREIEDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLDEVIGAGDA 186
Cdd:PRK11629 105 LENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
58-214 |
5.43e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 40.95 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 58 RGERVALIGHNGAGKSTFLKTIAG-LYP-----------------------------ISSGTLKV--------------T 93
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGeLIPnlgdyeeepswdevlkrfrgtelqnyfkkLYNGEIKVvhkpqyvdlipkvfK 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 94 GTVRSLFdiglgfepdatgrENILYRGLLlgltprfmreieDEIIEFADLGDFIDYPIKTYSAGMQVRLAFAISTAVDGD 173
Cdd:PRK13409 178 GKVRELL-------------KKVDERGKL------------DEVVERLGLENILDRDISELSGGELQRVAIAAALLRDAD 232
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489053489 174 ILLLDEV-----IGAGdaafMTKAKArIMNMVEKAEIMVLaSHDLA 214
Cdd:PRK13409 233 FYFFDEPtsyldIRQR----LNVARL-IRELAEGKYVLVV-EHDLA 272
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
46-94 |
5.80e-04 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 40.16 E-value: 5.80e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD 74
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
63-239 |
6.05e-04 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 40.63 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 63 ALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVrsLFD-------------IGLGFE-----PDATGRENILYrglllG 124
Cdd:PRK11144 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV--LFDaekgiclppekrrIGYVFQdarlfPHYKVRGNLRY-----G 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 125 LTpRFMREIEDEIIEFADLGDFID-YPIkTYSAGMQVRLAF--AISTAvdGDILLLDEVIGAGDAAfmtkAKARIMNMVE 201
Cdd:PRK11144 101 MA-KSMVAQFDKIVALLGIEPLLDrYPG-SLSGGEKQRVAIgrALLTA--PELLLMDEPLASLDLP----RKRELLPYLE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489053489 202 K--AEI---MVLASHDLANVRQLCTRALVFKAGTIAFDGRVED 239
Cdd:PRK11144 173 RlaREInipILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
58-223 |
7.68e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 38.89 E-value: 7.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 58 RGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTVRSLFDIGLGFEPDATGRENILYRGlllgltprfmreiedei 137
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 138 iefadlgdfidypiktysaGMQVRLAFAISTAVDGDILLLDEVIGAGDAA------FMTKAKARIMNMVEKAEIMVLASH 211
Cdd:smart00382 64 -------------------ELRLRLALALARKLKPDVLILDEITSLLDAEqealllLLEELRLLLLLKSEKNLTVILTTN 124
|
170
....*....|..
gi 489053489 212 DLANVRQLCTRA 223
Cdd:smart00382 125 DEKDLGPALLRR 136
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
47-82 |
7.72e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 40.30 E-value: 7.72e-04
10 20 30
....*....|....*....|....*....|....*.
gi 489053489 47 HALKGISVDIARGERVALIGHNGAGKSTFLKTIAGL 82
Cdd:TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
63-212 |
9.17e-04 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 39.13 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 63 ALIGHNGAGKSTFLKTI-AGLYPISSGTLK-------VTGTVRSLFDIGLGFEpDATGRENILYRGLllgltprfmrEIE 134
Cdd:cd03240 26 LIVGQNGAGKTTIIEALkYALTGELPPNSKggahdpkLIREGEVRAQVKLAFE-NANGKKYTITRSL----------AIL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 135 DEIIeFADLGDF---IDYPIKTYSAGMQVRLAFAISTA------VDGDILLLDEVIGAGDAAFMTKAKARIMNMVEKAEI 205
Cdd:cd03240 95 ENVI-FCHQGESnwpLLDMRGRCSGGEKVLASLIIRLAlaetfgSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKN 173
|
....*....
gi 489053489 206 --MVLASHD 212
Cdd:cd03240 174 fqLIVITHD 182
|
|
| PRK01889 |
PRK01889 |
GTPase RsgA; Reviewed |
38-148 |
1.02e-03 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234988 [Multi-domain] Cd Length: 356 Bit Score: 39.92 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 38 SAGANIEDIHALKGISVDIAR-----GERVALIGHNGAGKSTFLKTIAGlypissGTLKVTGTVRslfdiglgfEPDATG 112
Cdd:PRK01889 169 APGVPVLAVSALDGEGLDVLAawlsgGKTVALLGSSGVGKSTLVNALLG------EEVQKTGAVR---------EDDSKG 233
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 489053489 113 RENILYRGLLL----GL---TPRfMREIE------------DEIIEFADLGDFID 148
Cdd:PRK01889 234 RHTTTHRELHPlpsgGLlidTPG-MRELQlwdaedgveetfSDIEELAAQCRFRD 287
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
49-94 |
1.23e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 40.15 E-value: 1.23e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNG 1371
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
43-80 |
1.56e-03 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 38.83 E-value: 1.56e-03
10 20 30
....*....|....*....|....*....|....*....
gi 489053489 43 IEDIHALKGISVDIARGERV-ALIGHNGAGKSTFLKTIA 80
Cdd:COG3950 8 IENFRGFEDLEIDFDNPPRLtVLVGENGSGKTTLLEAIA 46
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
45-231 |
1.79e-03 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 39.45 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGT-VRSLFDIGLgfepdATGRENI--LYRGL 121
Cdd:PRK10261 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQrIDTLSPGKL-----QALRRDIqfIFQDP 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 122 LLGLTPRfmREIEDEIIEFADLGDFID------------------------YPiKTYSAGMQVRLAFAISTAVDGDILLL 177
Cdd:PRK10261 411 YASLDPR--QTVGDSIMEPLRVHGLLPgkaaaarvawllervgllpehawrYP-HEFSGGQRQRICIARALALNPKVIIA 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489053489 178 DEVIGAGDAAFmtkaKARIMNMV-----EKAEIMVLASHDLANVRQLCTRALVFKAGTI 231
Cdd:PRK10261 488 DEAVSALDVSI----RGQIINLLldlqrDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
46-217 |
2.03e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 38.79 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---------TVRSLF-DIGLGF--------- 106
Cdd:PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGqdllkadpeAQKLLRqKIQIVFqnpygslnp 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 107 ---------EP--------DATGRENILYRGLLLGLTPrfmreiedeiiEFADlgdfiDYPiKTYSAGMQVRLAFAISTA 169
Cdd:PRK11308 108 rkkvgqileEPllintslsAAERREKALAMMAKVGLRP-----------EHYD-----RYP-HMFSGGQRQRIAIARALM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489053489 170 VDGDILLLDEVIGAGDAAFmtkaKARIMN-MVEKAEIMVLA----SHDLANVR 217
Cdd:PRK11308 171 LDPDVVVADEPVSALDVSV----QAQVLNlMMDLQQELGLSyvfiSHDLSVVE 219
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
49-97 |
2.29e-03 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 38.01 E-value: 2.29e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPissGTLKVTGTVR 97
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE---GNVSVEGDIH 68
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
52-92 |
3.75e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 38.19 E-value: 3.75e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKV 92
Cdd:TIGR00954 471 LSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTK 511
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
45-232 |
4.91e-03 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 37.84 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 45 DIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG---TVRSLFD-----IGL--------GFEP 108
Cdd:PRK09700 275 DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGkdiSPRSPLDavkkgMAYitesrrdnGFFP 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053489 109 DATGRENIL---------YRGLLLGLTPRFMREIEDEIIEFADLG-DFIDYPIKTYSAGMQVRLAFAISTAVDGDILLLD 178
Cdd:PRK09700 355 NFSIAQNMAisrslkdggYKGAMGLFHEVDEQRTAENQRELLALKcHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489053489 179 EVIGAGDAAfmtkAKARIMNMV----EKAEIMVLASHDLANVRQLCTRALVFKAGTIA 232
Cdd:PRK09700 435 EPTRGIDVG----AKAEIYKVMrqlaDDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
44-104 |
5.25e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 38.09 E-value: 5.25e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489053489 44 EDIHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTGTvRSLFDIGL 104
Cdd:PTZ00265 396 KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS-HNLKDINL 455
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
49-82 |
5.30e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 37.79 E-value: 5.30e-03
10 20 30
....*....|....*....|....*....|....
gi 489053489 49 LKGISVDIARGERVALIGHNGAGKSTFLKTIAGL 82
Cdd:PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
52-94 |
5.97e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 37.80 E-value: 5.97e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 489053489 52 ISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:NF033858 285 VSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFG 327
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
46-94 |
9.78e-03 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 37.02 E-value: 9.78e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 489053489 46 IHALKGISVDIARGERVALIGHNGAGKSTFLKTIAGLYPISSGTLKVTG 94
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG 59
|
|
| |
