NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488615364|ref|WP_002552213|]
View 

MULTISPECIES: DUF1244 domain-containing protein [Pseudomonas]

Protein Classification

DUF1244 domain-containing protein( domain architecture ID 10007468)

DUF1244 domain-containing protein similar to Pseudomonas aeruginosa PA3440

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG3492 COG3492
Uncharacterized conserved protein, DUF1244 family [Function unknown];
1-93 5.48e-64

Uncharacterized conserved protein, DUF1244 family [Function unknown];


:

Pssm-ID: 442715  Cd Length: 96  Bit Score: 188.09  E-value: 5.48e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488615364  1 MTEQERLELEAAAFRRLVAHLDSRKDVQNIDLMNLSGFCRNCLSKWYKAAADEKHIDISLDDAREVVYGMPYSEWKAQYQ 80
Cdd:COG3492   1 MDDQTRTELEAAAFRRLVAHLDERTDVQNIDLMNLAGFCRNCLSKWYREAAEERGVELDKDEAREIVYGMPYAEWKAKYQ 80

                        90
                ....*....|...
gi 488615364 81 KEANAEQQAAFAK 93
Cdd:COG3492  81 TEATPEQLAAFEA 93
 
Name Accession Description Interval E-value
COG3492 COG3492
Uncharacterized conserved protein, DUF1244 family [Function unknown];
1-93 5.48e-64

Uncharacterized conserved protein, DUF1244 family [Function unknown];


Pssm-ID: 442715  Cd Length: 96  Bit Score: 188.09  E-value: 5.48e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488615364  1 MTEQERLELEAAAFRRLVAHLDSRKDVQNIDLMNLSGFCRNCLSKWYKAAADEKHIDISLDDAREVVYGMPYSEWKAQYQ 80
Cdd:COG3492   1 MDDQTRTELEAAAFRRLVAHLDERTDVQNIDLMNLAGFCRNCLSKWYREAAEERGVELDKDEAREIVYGMPYAEWKAKYQ 80

                        90
                ....*....|...
gi 488615364 81 KEANAEQQAAFAK 93
Cdd:COG3492  81 TEATPEQLAAFEA 93
DUF1244 pfam06844
Protein of unknown function (DUF1244); This family consists of several short bacterial ...
 28-92 1.44e-41

Protein of unknown function (DUF1244); This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.


Pssm-ID: 429151  Cd Length: 65  Bit Score: 130.45  E-value: 1.44e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488615364  28 QNIDLMNLSGFCRNCLSKWYKAAADEKHIDISLDDAREVVYGMPYSEWKAQYQKEANAEQQAAFA 92
Cdd:pfam06844  1 QNIDLMNLAGFCRNCLSKWYREAAEERGVELDKDEAREIVYGMPYAEWKAKHQTEATPEQLAAFE 65
 
Name Accession Description Interval E-value
COG3492 COG3492
Uncharacterized conserved protein, DUF1244 family [Function unknown];
1-93 5.48e-64

Uncharacterized conserved protein, DUF1244 family [Function unknown];


Pssm-ID: 442715  Cd Length: 96  Bit Score: 188.09  E-value: 5.48e-64
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488615364  1 MTEQERLELEAAAFRRLVAHLDSRKDVQNIDLMNLSGFCRNCLSKWYKAAADEKHIDISLDDAREVVYGMPYSEWKAQYQ 80
Cdd:COG3492   1 MDDQTRTELEAAAFRRLVAHLDERTDVQNIDLMNLAGFCRNCLSKWYREAAEERGVELDKDEAREIVYGMPYAEWKAKYQ 80

                        90
                ....*....|...
gi 488615364 81 KEANAEQQAAFAK 93
Cdd:COG3492  81 TEATPEQLAAFEA 93
DUF1244 pfam06844
Protein of unknown function (DUF1244); This family consists of several short bacterial ...
 28-92 1.44e-41

Protein of unknown function (DUF1244); This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.


Pssm-ID: 429151  Cd Length: 65  Bit Score: 130.45  E-value: 1.44e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488615364  28 QNIDLMNLSGFCRNCLSKWYKAAADEKHIDISLDDAREVVYGMPYSEWKAQYQKEANAEQQAAFA 92
Cdd:pfam06844  1 QNIDLMNLAGFCRNCLSKWYREAAEERGVELDKDEAREIVYGMPYAEWKAKHQTEATPEQLAAFE 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH