NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|488534883|ref|XP_004459147|]
View 

distal membrane-arm assembly complex protein 1 [Dasypus novemcinctus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4536 super family cl20928
Domain of unknown function (DUF4536); This domain family is thought to be a transmembrane ...
 46-92 3.79e-12

Domain of unknown function (DUF4536); This domain family is thought to be a transmembrane helix. It is found in eukaryotes, and is approximately 50 amino acids in length. In humans, it is located in the chromosomal position, C9orf123. The family contains the uncharacterized Sch. pombe protein TAM6 which is found in the mitochondrion.


The actual alignment was detected with superfamily member pfam15055:

Pssm-ID: 464474  Cd Length: 47  Bit Score: 56.16  E-value: 3.79e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 488534883   46 DCWSCRVLSGSGLLGAGGYVYWVARKPMKLGYPPTPGIITQMVIGIS 92
Cdd:pfam15055   1 DCWSCRLVSGSGLIGAGAYVYVQARRRMKLGGPPGMGTIAQMAFALG 47
 
Name Accession Description Interval E-value
DUF4536 pfam15055
Domain of unknown function (DUF4536); This domain family is thought to be a transmembrane ...
 46-92 3.79e-12

Domain of unknown function (DUF4536); This domain family is thought to be a transmembrane helix. It is found in eukaryotes, and is approximately 50 amino acids in length. In humans, it is located in the chromosomal position, C9orf123. The family contains the uncharacterized Sch. pombe protein TAM6 which is found in the mitochondrion.


Pssm-ID: 464474  Cd Length: 47  Bit Score: 56.16  E-value: 3.79e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 488534883   46 DCWSCRVLSGSGLLGAGGYVYWVARKPMKLGYPPTPGIITQMVIGIS 92
Cdd:pfam15055   1 DCWSCRLVSGSGLIGAGAYVYVQARRRMKLGGPPGMGTIAQMAFALG 47
 
Name Accession Description Interval E-value
DUF4536 pfam15055
Domain of unknown function (DUF4536); This domain family is thought to be a transmembrane ...
 46-92 3.79e-12

Domain of unknown function (DUF4536); This domain family is thought to be a transmembrane helix. It is found in eukaryotes, and is approximately 50 amino acids in length. In humans, it is located in the chromosomal position, C9orf123. The family contains the uncharacterized Sch. pombe protein TAM6 which is found in the mitochondrion.


Pssm-ID: 464474  Cd Length: 47  Bit Score: 56.16  E-value: 3.79e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 488534883   46 DCWSCRVLSGSGLLGAGGYVYWVARKPMKLGYPPTPGIITQMVIGIS 92
Cdd:pfam15055   1 DCWSCRLVSGSGLIGAGAYVYVQARRRMKLGGPPGMGTIAQMAFALG 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH