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Conserved domains on  [gi|481048609|gb|AGJ98296|]
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GvpG [Prodigiosinella confusarubida]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GvpG super family cl04943
Gas vesicle protein G; Gas vesicles are intracellular, protein-coated, and hollow organelles ...
 8-74 1.30e-07

Gas vesicle protein G; Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are found in gas vesicles and play a role in the formation of gas vesicles.


The actual alignment was detected with superfamily member pfam05120:

Pssm-ID: 428318  Cd Length: 72  Bit Score: 45.95  E-value: 1.30e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 481048609    8 LFSPVKGVMWIFRQIHELAEDELAgEADRIRESLTDLYMLLETGQITEDEFEQQEAVLLDRLDALDE 74
Cdd:pfam05120   5 PLAPVRGVIWIAEQIQERAERQLD-DPENLQKELAALQRQLDMGEIDEEEFDRREEELLLRLEALTR 70
 
Name Accession Description Interval E-value
GvpG pfam05120
Gas vesicle protein G; Gas vesicles are intracellular, protein-coated, and hollow organelles ...
 8-74 1.30e-07

Gas vesicle protein G; Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are found in gas vesicles and play a role in the formation of gas vesicles.


Pssm-ID: 428318  Cd Length: 72  Bit Score: 45.95  E-value: 1.30e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 481048609    8 LFSPVKGVMWIFRQIHELAEDELAgEADRIRESLTDLYMLLETGQITEDEFEQQEAVLLDRLDALDE 74
Cdd:pfam05120   5 PLAPVRGVIWIAEQIQERAERQLD-DPENLQKELAALQRQLDMGEIDEEEFDRREEELLLRLEALTR 70
 
Name Accession Description Interval E-value
GvpG pfam05120
Gas vesicle protein G; Gas vesicles are intracellular, protein-coated, and hollow organelles ...
 8-74 1.30e-07

Gas vesicle protein G; Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are found in gas vesicles and play a role in the formation of gas vesicles.


Pssm-ID: 428318  Cd Length: 72  Bit Score: 45.95  E-value: 1.30e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 481048609    8 LFSPVKGVMWIFRQIHELAEDELAgEADRIRESLTDLYMLLETGQITEDEFEQQEAVLLDRLDALDE 74
Cdd:pfam05120   5 PLAPVRGVIWIAEQIQERAERQLD-DPENLQKELAALQRQLDMGEIDEEEFDRREEELLLRLEALTR 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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