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Conserved domains on  [gi|472820143|gb|AGI44108|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Heteracris adspersa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-201 5.36e-69

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 220.01  E-value: 5.36e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00165 309 FLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYF 160
Cdd:MTH00165 389 VSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWL 468

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 472820143 161 GYLISSVNFSDDLLSLSFLSSVSFVGSMWFMPFLSTKFIKY 201
Cdd:MTH00165 469 GYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISY 509
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-201 5.36e-69

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 220.01  E-value: 5.36e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00165 309 FLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYF 160
Cdd:MTH00165 389 VSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWL 468

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 472820143 161 GYLISSVNFSDDLLSLSFLSSVSFVGSMWFMPFLSTKFIKY 201
Cdd:MTH00165 469 GYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISY 509
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 83-199 7.80e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 90.30  E-value: 7.80e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   83 YSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYFGY 162
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 472820143  163 LISSVNfSDDLLSLSFLSSVSFVGSMWFMPFLSTKFI 199
Cdd:pfam06455  81 ELSNLS-NKQLKKSLNFNLHSFSGSMWFFPNLSHRLI 116
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-164 2.84e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 84.82  E-value: 2.84e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-MVCLSWINCFIFFLYFFSTGL 79
Cdd:COG1009  341 FLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  80 TASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWL---------IFPIPHVIILPYYLKFLT 150
Cdd:COG1009  420 TAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALP 499

                        170
                 ....*....|....
gi 472820143 151 IFVVVLGSYFGYLI 164
Cdd:COG1009  500 LLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-201 5.36e-69

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 220.01  E-value: 5.36e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00165 309 FLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYF 160
Cdd:MTH00165 389 VSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWL 468

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 472820143 161 GYLISSVNFSDDLLSLSFLSSVSFVGSMWFMPFLSTKFIKY 201
Cdd:MTH00165 469 GYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISY 509
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-197 6.05e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 142.86  E-value: 6.05e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00209 305 FICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLT 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYF 160
Cdd:MTH00209 385 AAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLL 464

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 472820143 161 GYLISSVNfsddLLSLSFLSSVSFVGSMWFMPFLSTK 197
Cdd:MTH00209 465 MYMVLKKN----FFLIKGYKVNYFLSQMWFLPDLSSQ 497
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-201 3.17e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 140.75  E-value: 3.17e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00151 306 FLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLT 385

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVlgsyF 160
Cdd:MTH00151 386 ALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVIL----L 461

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 472820143 161 GYLISSVNFSDDLLSLSFLSSVSFVGSMWFMPFLSTKFIKY 201
Cdd:MTH00151 462 GLFLSFGFWDSGFSSSKMVKLSFFFSSMWFLSPLSSQPLKS 502
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-199 2.65e-38

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 138.36  E-value: 2.65e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00207 309 FVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALT 388

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYF 160
Cdd:MTH00207 389 AAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALL 468

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 472820143 161 GYLISSVNFSDDLLSLSFLSSVSFVGSMWFMPFLSTKFI 199
Cdd:MTH00207 469 AWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFI 507
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-157 4.17e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 118.80  E-value: 4.17e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00108 340 FMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLT 419

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFP--IPHVIIlPYYLKFLTIFVVVLG 157
Cdd:MTH00108 420 AAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQMTM-PLYLKLTALAVTILG 497
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-161 4.75e-31

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 118.73  E-value: 4.75e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00004 339 FLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFT 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPI-PHVIILPYYLKFLTIFVVVLGSY 159
Cdd:MTH00004 419 AAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGIL 498


                 ..
gi 472820143 160 FG 161
Cdd:MTH00004 499 LA 500
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-157 2.87e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 113.46  E-value: 2.87e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00066 337 FLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFT 416

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPI-PHVIILPYYLKFLTIFVVVLG 157
Cdd:MTH00066 417 AVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLG 494
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-164 3.33e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 113.53  E-value: 3.33e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00208 366 FLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLT 445

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHvIILPYYLKFLTIFVVVLGSYF 160
Cdd:MTH00208 446 AVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPP-LTLPLILKSLPLIVTIIGAAF 524


                 ....
gi 472820143 161 GYLI 164
Cdd:MTH00208 525 SFSF 528
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-165 3.51e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 113.12  E-value: 3.51e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00211 334 FMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLT 413

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVII-LPYYLKFLTIFVVVLGSY 159
Cdd:MTH00211 414 AAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLL 493


                 ....*.
gi 472820143 160 FGYLIS 165
Cdd:MTH00211 494 LGLELV 499
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-92 3.50e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 104.91  E-value: 3.50e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00137 345 FLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFT 424

                         90
                 ....*....|...
gi 472820143  81 ASYSFRL-FYYSM 92
Cdd:MTH00137 425 AVYSLRVvFFVSM 437
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 83-199 7.80e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 90.30  E-value: 7.80e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   83 YSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYFGY 162
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 472820143  163 LISSVNfSDDLLSLSFLSSVSFVGSMWFMPFLSTKFI 199
Cdd:pfam06455  81 ELSNLS-NKQLKKSLNFNLHSFSGSMWFFPNLSHRLI 116
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-157 1.48e-20

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 88.60  E-value: 1.48e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00020 340 FLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLT 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYS-MSGDNNFYSSFSFDDNGYYISFGMIGLL-IVAVFGGSLLSWLI--FPIPHVIILPYYLKFLTIFVVVL 156
Cdd:MTH00020 420 AFYSIRLIYLTfLSNTNLKKAVFFHLHEGDWNLLLPLGILaLGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSLG 499


                 .
gi 472820143 157 G 157
Cdd:MTH00020 500 G 500
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-164 2.11e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 88.14  E-value: 2.11e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00210 341 FLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLT 420

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSS--FSFDDNGYYISFGMIGLLIVAVFGGSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGS 158
Cdd:MTH00210 421 AFYSIRLIYLTFITNTNSKKEvfIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGA 500


                 ....*.
gi 472820143 159 YFGYLI 164
Cdd:MTH00210 501 LLAFVI 506
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-164 1.34e-19

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 85.98  E-value: 1.34e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEmVCLSWINCFIFFLYFFSTGLT 80
Cdd:PRK06590 347 FLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLT 425

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNnfyssfsfDDNGY-------YISFGMIGLLIVAVFGG-----SLLSWLIFPIPHVII-----LP 143
Cdd:PRK06590 426 AFYSFRLIFLVFHGKE--------KEKIHhphespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhLP 497

                        170       180
                 ....*....|....*....|.
gi 472820143 144 YYLKFLTIFVVVLGSYFGYLI 164
Cdd:PRK06590 498 VWVALLPLVVALAGIALAWLL 518
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-164 2.84e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 84.82  E-value: 2.84e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLkDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-MVCLSWINCFIFFLYFFSTGL 79
Cdd:COG1009  341 FLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  80 TASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFGGSLLSWL---------IFPIPHVIILPYYLKFLT 150
Cdd:COG1009  420 TAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALP 499

                        170
                 ....*....|....
gi 472820143 151 IFVVVLGSYFGYLI 164
Cdd:COG1009  500 LLLSLLGIALGYLL 513
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-95 4.55e-16

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 75.83  E-value: 4.55e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKD--------SQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSwiNCFIFFL 72
Cdd:PRK07376 357 FLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFV 434

                         90       100
                 ....*....|....*....|...
gi 472820143  73 YFFSTGLTASYSFRLFYYSMSGD 95
Cdd:PRK07376 435 GFLTAGMTAFYMFRMYFLTFEGE 457
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-76 1.67e-10

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 58.86  E-value: 1.67e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 472820143    1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFS 76
Cdd:pfam00361 216 FLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-99 2.03e-10

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 59.14  E-value: 2.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNL--------KDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMvclSWINCFIF-F 71
Cdd:CHL00025 357 FLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaI 433

                         90       100
                 ....*....|....*....|....*...
gi 472820143  72 LYFFSTGLTASYSFRLFYYSMSGDNNFY 99
Cdd:CHL00025 434 IAWSTAGLTAFYMFRIYLLTFEGHLRVH 461
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-59 2.49e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 56.12  E-value: 2.49e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLK-DSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEM 59
Cdd:MTH00032 356 FLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-90 2.92e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 49.76  E-value: 2.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVcLSWINCFIFFLYFFSTGLT 80
Cdd:COG0651  341 FLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLT 418

                         90
                 ....*....|
gi 472820143  81 ASYSFRLFYY 90
Cdd:COG0651  419 LAYFVRIFGR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-89 1.22e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 44.96  E-value: 1.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTgLT 80
Cdd:PRK12667 364 FLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-IS 441


                 ....*....
gi 472820143  81 ASYSFRLFY 89
Cdd:PRK12667 442 LVGYFRAWY 450
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-58 1.78e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.64  E-value: 1.78e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 472820143   1 FMCAGSMIHNLKDsQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 58
Cdd:PRK08667 350 FLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 1-81 1.87e-04

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 41.43  E-value: 1.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILEMVCLSWINCFIFFLYF-FSTGL 79
Cdd:PRK07390 350 FMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLlLVNAL 425


                 ..
gi 472820143  80 TA 81
Cdd:PRK07390 426 TA 427
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-164 2.73e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 41.06  E-value: 2.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:MTH00095 293 FMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLT 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143  81 ASYSFRLFYYSMSGDNNFYSSFSFDDNGYYISFGMIGLLIVAVFggSLLSWLIFPIPHVIILPYYLKFLTIFVVVLGSYF 160
Cdd:MTH00095 373 FGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVFFLW--WLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFF 450


                 ....
gi 472820143 161 GYLI 164
Cdd:MTH00095 451 FFKL 454
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-88 3.82e-04

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 40.45  E-value: 3.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWIncFIFFLYFFSTGLT 80
Cdd:COG1008  344 FLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILT 420


                 ....*...
gi 472820143  81 ASYSFRLF 88
Cdd:COG1008  421 AAYLLWMY 428
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-57 9.84e-04

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 39.11  E-value: 9.84e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 472820143   1 FMCAGSMIHNLKDSqDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 57
Cdd:PRK12668 309 FMSAGAVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK12650 PRK12650
DUF4040 family protein;
1-87 1.01e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.26  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNlKDSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYFFSTGLT 80
Cdd:PRK12650 341 FMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALG 419

                         90
                 ....*....|.
gi 472820143  81 A----SYSFRL 87
Cdd:PRK12650 420 AvftfAYSARL 430
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-90 1.81e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 38.32  E-value: 1.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 472820143   1 FMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEMVCLSWINCFIFFLYfFSTGLT 80
Cdd:PRK08375 340 FLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLL-ASSLLA 417

                         90
                 ....*....|
gi 472820143  81 ASYSFRLFYY 90
Cdd:PRK08375 418 LLYFLRIWYR 427
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-57 2.98e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.87  E-value: 2.98e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 472820143   1 FMCAGSMIHNLKdSQDIRFMGSIVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 57
Cdd:PRK05846 346 FLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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