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Conserved domains on  [gi|47156566|gb|AAT12172|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Paraspadella gotoi]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009625)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-104 5.25e-24

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 88.03  E-value: 5.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPF-- 78
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWsn 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 47156566   79 ------TKILFFFLAVIMLGLIYEWFFGGLDW 104
Cdd:MTH00203  81 qlsslsLLLAFLFLILLTLGLIYEWLQGGLEW 112
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-104 5.25e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 88.03  E-value: 5.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPF-- 78
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWsn 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 47156566   79 ------TKILFFFLAVIMLGLIYEWFFGGLDW 104
Cdd:MTH00203  81 qlsslsLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-103 3.84e-16

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 67.45  E-value: 3.84e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    31 NKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILP--MPFTKI-------LFFFLAVIMLGLIYEWFFGG 101
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwaVSFRELgwfgfveMLIFIAILLVGLVYAWKKGA 92


                  ..
gi 47156566   102 LD 103
Cdd:pfam00507  93 LE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-104 6.30e-15

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 64.76  E-value: 6.30e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   4 VMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILP-------M 76
Cdd:COG0838   8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwavvfreL 87

                        90       100       110
                ....*....|....*....|....*....|
gi 47156566  77 PFTKIL--FFFLAVIMLGLIYEWFFGGLDW 104
Cdd:COG0838  88 GWFGLIemLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-104 5.25e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 88.03  E-value: 5.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPF-- 78
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWsn 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 47156566   79 ------TKILFFFLAVIMLGLIYEWFFGGLDW 104
Cdd:MTH00203  81 qlsslsLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 33-104 1.39e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 86.90  E-value: 1.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   33 EKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPF-----TKILFFF-----LAVIMLGLIYEWFFGGL 102
Cdd:MTH00136  33 EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWgdqlpSPLLTFFwatavLILLTLGLIYEWLQGGL 112


                 ..
gi 47156566  103 DW 104
Cdd:MTH00136 113 EW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 33-104 9.72e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 84.61  E-value: 9.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   33 EKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPF----------TKILFFFLAVIMLGLIYEWFFGGL 102
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWasqtnnlntmLTMALLLISLLALSLAYEWTQKGL 111


                 ..
gi 47156566  103 DW 104
Cdd:MTH00106 112 EW 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-104 6.98e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 82.73  E-value: 6.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    3 LVMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMP----- 77
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPwasql 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 47156566   78 FTKILFFFLAVIML-----GLIYEWFFGGLDW 104
Cdd:MTH00069  81 NTPTNTLFWSTLILilltlGLIYEWIQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-105 7.45e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 82.60  E-value: 7.45e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFL-FFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILP---- 75
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLgLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPvlqs 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 47156566   76 ------MPFTKILFFFLAVIMLGLIYEWFFGGLDWM 105
Cdd:MTH00148  81 lgssfsVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-105 2.02e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 78.77  E-value: 2.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILicsfmyfLFFLNFKVDFNK---EKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMP 77
Cdd:MTH00113   4 ISMLTISLALSTI-------LTTLNFWLTQTKpdnEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 76

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 47156566   78 F-----TKILFFFLAVIM-----LGLIYEWFFGGLDWM 105
Cdd:MTH00113  77 WainltTPTTTLTWATIIltlltLGLIYEWLQGGLEWA 114
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-106 8.31e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 74.64  E-value: 8.31e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFLFF-LNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPFT 79
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWmLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 47156566   80 KILFF----------FLAVIMLGLIYEWFFGGLDWMV 106
Cdd:MTH00202  81 LKSSWskggllggtiFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-104 2.17e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 73.66  E-value: 2.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    3 LVMMYFCFSILICSFMYFL-FFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPFT-- 79
Cdd:MTH00161   1 MILIILLIILLISIILMILaSLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIfk 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 47156566   80 --------KILFFFLAVIMLGLIYEWFFGGLDW 104
Cdd:MTH00161  81 tsnmmswlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 31-104 3.86e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 73.09  E-value: 3.86e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   31 NKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPFTK----------ILFFFLAVIMLGLIYEWFFG 100
Cdd:MTH00042  31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATlitnpstllpISLIFLIILTIGLVYEWVNG 110


                 ....
gi 47156566  101 GLDW 104
Cdd:MTH00042 111 GLEW 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-104 4.52e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 72.97  E-value: 4.52e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFL-FFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMP-- 77
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAaWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPti 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 47156566   78 ------FTKIL--FFFLAVIMLGLIYEWFFGGLDW 104
Cdd:MTH00012  81 lmtstsKTVVYtsILFLLILVIGLIHEWREGSLDW 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-103 3.84e-16

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 67.45  E-value: 3.84e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    31 NKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILP--MPFTKI-------LFFFLAVIMLGLIYEWFFGG 101
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwaVSFRELgwfgfveMLIFIAILLVGLVYAWKKGA 92


                  ..
gi 47156566   102 LD 103
Cdd:pfam00507  93 LE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-104 6.30e-15

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 64.76  E-value: 6.30e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   4 VMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILP-------M 76
Cdd:COG0838   8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwavvfreL 87

                        90       100       110
                ....*....|....*....|....*....|
gi 47156566  77 PFTKIL--FFFLAVIMLGLIYEWFFGGLDW 104
Cdd:COG0838  88 GWFGLIemLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-104 5.13e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 62.80  E-value: 5.13e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPFTK 80
Cdd:MTH00055   5 FLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVY 84

                         90       100       110
                 ....*....|....*....|....*....|...
gi 47156566   81 ---------ILFFFLAVIMLGLIYEWFFGGLDW 104
Cdd:MTH00055  85 nqiglfgfwVMYLFLIILTIGLIYEWVKGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 4-104 1.43e-12

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 59.11  E-value: 1.43e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    4 VMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILP--MPFTKI 81
Cdd:PRK06602  11 FLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwaVSFREI 90

                         90       100       110
                 ....*....|....*....|....*....|
gi 47156566   82 -------LFFFLAVIMLGLIYEWFFGGLDW 104
Cdd:PRK06602  91 gwlgfveAMIFILVLLVGLVYLWRKGALDW 120
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 12-104 3.77e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 55.07  E-value: 3.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   12 ILICSFMYFLFFLNFKVDfNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPFTK---------IL 82
Cdd:MTH00018  12 VLSALFSGASYFLGVKQP-DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYnqiapfgfwTM 90

                         90       100
                 ....*....|....*....|..
gi 47156566   83 FFFLAVIMLGLIYEWFFGGLDW 104
Cdd:MTH00018  91 VGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-104 5.15e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 54.94  E-value: 5.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   31 NKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPFT---------KILFFFLAVIMLGLIYEWFFGG 101
Cdd:MTH00030  40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVfnqlnlfsfWIVYTFLIVLAIGLAYEWIKGG 119


                 ...
gi 47156566  102 LDW 104
Cdd:MTH00030 120 LEW 122
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-106 1.39e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 45.66  E-value: 1.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMYFCFSILICSFMYFLFFLNFKVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLIL-----P 75
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLgllvsD 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 47156566   76 MPFTKILFFFLAVIMLGLIYEWFFGGLDWMV 106
Cdd:MTH00092  81 FSSLISFFMLMIFIFFGFYMEWWYGKLIWVI 111
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 30-104 4.87e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 44.66  E-value: 4.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   30 FNKEKISPFECGFDPLSDARLP--FCMKFFVIGVIFLIFDIEVVLILP--MPFTKILFF-------FLAVIMLGLIYEWF 98
Cdd:PRK07928  33 YNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPwaVSFDALGVFglvemalFMLTVFVAYAYVWR 112


                 ....*.
gi 47156566   99 FGGLDW 104
Cdd:PRK07928 113 RGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-104 5.23e-06

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 41.90  E-value: 5.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    1 MFLVMMY--FCFSILICSFMYFLFFLNFK----VDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLIL 74
Cdd:CHL00022   1 MFLLYEYdiFWAFLIISSLIPILAFLISGllapISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 47156566   75 P--MPFTKI-------LFFFLAVIMLGLIYEWFFGGLDW 104
Cdd:CHL00022  81 PwaMSFDVLgvsafieALIFVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
31-105 2.33e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 40.11  E-value: 2.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566   31 NKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILP--MPFTKI-------LFFFLAVIMLGLIYEWFFGG 101
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPwaVAYDKLglfalieMLIFVVMLLVGLAYAWKKKV 118


                 ....
gi 47156566  102 LDWM 105
Cdd:PRK07756 119 LQWL 122
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 2-106 2.79e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 34.49  E-value: 2.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47156566    2 FLVMMYFCFSILICSFMYFLFFLNFkVDFNKEKISPFECGFDPLSDARLPFCMKFFVIGVIFLIFDIEVVLILPMPFTKI 81
Cdd:MTH00060   6 FVFFVFFLLFLVIYFFHSGLWNNKI-YSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGL 84

                         90       100       110
                 ....*....|....*....|....*....|..
gi 47156566   82 LF-------FFLAVIMLGLIYEWFFGGLDWMV 106
Cdd:MTH00060  85 LFynfwyyyFFLLLLFLGFVVELFSGYVRWVY 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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