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Conserved domains on  [gi|47117378|sp|P61241|]
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RecName: Full=Protein Ycf2

Protein Classification

Ycf2( domain architecture ID 11414145)

Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2297 0e+00

Ycf2; Provisional


:

Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4101.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378     1 MKGHQLKSWIFELREILREIKNSHYFLDSWTKLNLVGSFTHIFFHQERFMKLFDPRIWSILLSCDSQSSTSNRYFTIKGV 80
Cdd:CHL00206    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    81 VLLVVAVLIYRINNRNMVERKNLYLMRLLPIPMNSIGPRNDTLEESFLSSNINRLIVSLLYLPKGKKISESCFMDPKEST 160
Cdd:CHL00206   81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   161 WLLPITKKCIMPESNWGSRWWRNRIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVSYTDtdDPIRKDHDLELFDR 240
Cdd:CHL00206  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMD--DPIRKDHDWELFDR 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   241 LSPGKKQNIINLNSGQLFEILVKHLICYLMSAFREKRPIEVEGFFKQQGAEATIQSNDIEHVPRLFSgnKNKWGISLQNC 320
Cdd:CHL00206  239 LSPRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFS--RNKWAISLQNC 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   321 AQFHMWQFHQDLFVSWGKNQHESDFLRNVSRENLIWLGSMWLVNKDRFFSKVRNVSSNIQYDSTRSIFVKVTDSSQLKGS 400
Cdd:CHL00206  317 AQFHMWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGS 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   401 SDQSRDHFNSISNEDSEYHTLIHQTEIEQLKERSILWDPSFLQTERTEIESDRFPKCLSGYFSMSRLFTEREKQMNNHLF 480
Cdd:CHL00206  397 SDQSRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLL 476

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   481 PEEIEEFIGNPTRSIRSFFSDRWSELHLGSNATERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHP 560
Cdd:CHL00206  477 PEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHP 556

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   561 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFCDLFHLFHGRNKGGYTLHHDFESEERFQERADLFTLSITEPDLMYHKGF 640
Cdd:CHL00206  557 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGF 636

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   641 AFSIDSYGLDQKKLLNEVFNSRDESKKKSLLVLPHIFYEENESFYRRIRTKSVRISCRNGLEDP--KIVVFASNNIMEAV 718
Cdd:CHL00206  637 AFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAV 716

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   719 NQYRLIRNLIQIQYSTYGYIRNVSKRFFLMNRSDRNFEYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL- 797
Cdd:CHL00206  717 NQYRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLi 796

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   798 -ISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSEVIDKQDLSKSLRFFLSKSLL 876
Cdd:CHL00206  797 fISRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 876

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   877 F-------LSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLNKLKPFLLDDHDTSQRSKLLING 949
Cdd:CHL00206  877 FlskkllfLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLING 956

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   950 GTIARFWFNKIPKWMIDSFHTRNNRGKSFENTDSYFSMISHDRDNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFWFY 1029
Cdd:CHL00206  957 GTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1030 CNKRFPFYAEKTRINNYDLTYGQFLNISFIRNKIFSLCVGKKKHVFLERDTIspSPIESQVSDIFIPNDFPQSGDETYNL 1109
Cdd:CHL00206 1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTI--SPIESQVSNIFIPNDFPQSGDETYNL 1114

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1110 YKSFHFPTRSDPFVRRAIYSIADISGTPLTEEQRVNFEGTYCQPLSDLNLSDSEGKNLHQYLSFNSNMGLIHTPCSEKYL 1189
Cdd:CHL00206 1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1190 PSGKRKKRNLCLNKCVEKRQMYRTFQRDSAFSNISKWNLFQTYMPWFLTSTGCKYINFILLDTFSDPLPILSSSHKFVSI 1269
Cdd:CHL00206 1195 PSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSI 1274

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1270 FHDIMHGS--AWSIPQKKLRAILPQWNLISEISSKCLQNLLLSEEMIHRnnESPVPLIWTHLRSPNPREFFYSSLFLLLV 1347
Cdd:CHL00206 1275 FHDIMHGSdiSWRILQKKLGLKLPQWNLISEISSKCLHNLLLSEEMIHR--ESESPLIWTHLRSPNVREFLYSILFLLLV 1352

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1348 AGYLVRTHLLFVSRVSSELHTELEKIKSLMIPSYMMELRKLLDSYPPPELNSFWLKNLFLVALEQLGDSPEEIRGsdSGG 1427
Cdd:CHL00206 1353 AGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRG--SGG 1430

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1428 NMLLGGGPAYGVKSIRSKKKdlnINLIDIIDLISIIPNPVNPITFSINTRRLSRTSKEIYSLIRKRKNVNSDWIDGKIES 1507
Cdd:CHL00206 1431 NMLLGGGPAYGVKSIRSKKK---YLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIES 1507

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1508 WVANSDLIDDEEREFLVQFSALTTEKRIDQILWSLTHSDPFSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNSEFNRSCL 1587
Cdd:CHL00206 1508 WVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCL 1587

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1588 AERRIFLAHYQTITYSQTSCGANSSHFPSHGKPFSLRLDLSPSRGILVIGSIGTGRSYLVKYLATNSYLPSITVSPNKFL 1667
Cdd:CHL00206 1588 AERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1668 DDKPKGYliddiddsddidlddsNSIDDSDDVDIGDSDDIDIDDDLDAELLTMTNVLTMYMTPKMDRFDITPQLELAKAM 1747
Cdd:CHL00206 1668 DNKPKGF----------------LIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAM 1731

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1748 SPCIIWIPNIHDLYVNESNYLSLGLLVNHLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKSNTCIKIRRLLIPQQRK 1827
Cdd:CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1828 HFFILSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDH 1907
Cdd:CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDH 1891

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1908 GILFYQIGRSFAQNVLLSNCSIDPISTYMKKKSCKEGDSYLYKWYFELGTSIKKLTTLLYLLSCSAGSVAQDLWSPPGPD 1987
Cdd:CHL00206 1892 GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPD 1971

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1988 EKNWITSYGFVENDSDLVHGLLE--GALVGSSRTEKDCSQFDNDRVTLLLRSEPRNPLDMMQNGSCSIVDQRFLYEKYES 2065
Cdd:CHL00206 1972 EKNGITSYGLVENDSDLVHGLLEveGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYES 2051

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  2066 EFEEGEGEGTLDPQQIEEDLFNHIVWAPRIWRPCGNLFDCIERPNESRFPYRSRSFRGKQIISHKEDELQENDLEFLQSG 2145
Cdd:CHL00206 2052 EFEEGESEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSG 2131

                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  2146 TMQYQTRDRSSKEQGFFQISQFIWDPADPFFFLFKDQPFVSVFARREFFADEEMSKGLITSQTHSPTSIYERWLIKNTQE 2225
Cdd:CHL00206 2132 TMQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQE 2211

                        2250      2260      2270      2280      2290      2300      2310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47117378  2226 KHFELLIHRQRWLSTNSSLSNGSFRSNTPSESYQYLSNLFLSNGTLLDQMAKTLLRKRWLFPDEMKhlIHVT 2297
Cdd:CHL00206 2212 KHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMK--IGFM 2281
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2297 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4101.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378     1 MKGHQLKSWIFELREILREIKNSHYFLDSWTKLNLVGSFTHIFFHQERFMKLFDPRIWSILLSCDSQSSTSNRYFTIKGV 80
Cdd:CHL00206    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    81 VLLVVAVLIYRINNRNMVERKNLYLMRLLPIPMNSIGPRNDTLEESFLSSNINRLIVSLLYLPKGKKISESCFMDPKEST 160
Cdd:CHL00206   81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   161 WLLPITKKCIMPESNWGSRWWRNRIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVSYTDtdDPIRKDHDLELFDR 240
Cdd:CHL00206  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMD--DPIRKDHDWELFDR 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   241 LSPGKKQNIINLNSGQLFEILVKHLICYLMSAFREKRPIEVEGFFKQQGAEATIQSNDIEHVPRLFSgnKNKWGISLQNC 320
Cdd:CHL00206  239 LSPRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFS--RNKWAISLQNC 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   321 AQFHMWQFHQDLFVSWGKNQHESDFLRNVSRENLIWLGSMWLVNKDRFFSKVRNVSSNIQYDSTRSIFVKVTDSSQLKGS 400
Cdd:CHL00206  317 AQFHMWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGS 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   401 SDQSRDHFNSISNEDSEYHTLIHQTEIEQLKERSILWDPSFLQTERTEIESDRFPKCLSGYFSMSRLFTEREKQMNNHLF 480
Cdd:CHL00206  397 SDQSRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLL 476

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   481 PEEIEEFIGNPTRSIRSFFSDRWSELHLGSNATERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHP 560
Cdd:CHL00206  477 PEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHP 556

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   561 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFCDLFHLFHGRNKGGYTLHHDFESEERFQERADLFTLSITEPDLMYHKGF 640
Cdd:CHL00206  557 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGF 636

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   641 AFSIDSYGLDQKKLLNEVFNSRDESKKKSLLVLPHIFYEENESFYRRIRTKSVRISCRNGLEDP--KIVVFASNNIMEAV 718
Cdd:CHL00206  637 AFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAV 716

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   719 NQYRLIRNLIQIQYSTYGYIRNVSKRFFLMNRSDRNFEYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL- 797
Cdd:CHL00206  717 NQYRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLi 796

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   798 -ISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSEVIDKQDLSKSLRFFLSKSLL 876
Cdd:CHL00206  797 fISRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 876

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   877 F-------LSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLNKLKPFLLDDHDTSQRSKLLING 949
Cdd:CHL00206  877 FlskkllfLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLING 956

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   950 GTIARFWFNKIPKWMIDSFHTRNNRGKSFENTDSYFSMISHDRDNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFWFY 1029
Cdd:CHL00206  957 GTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1030 CNKRFPFYAEKTRINNYDLTYGQFLNISFIRNKIFSLCVGKKKHVFLERDTIspSPIESQVSDIFIPNDFPQSGDETYNL 1109
Cdd:CHL00206 1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTI--SPIESQVSNIFIPNDFPQSGDETYNL 1114

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1110 YKSFHFPTRSDPFVRRAIYSIADISGTPLTEEQRVNFEGTYCQPLSDLNLSDSEGKNLHQYLSFNSNMGLIHTPCSEKYL 1189
Cdd:CHL00206 1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1190 PSGKRKKRNLCLNKCVEKRQMYRTFQRDSAFSNISKWNLFQTYMPWFLTSTGCKYINFILLDTFSDPLPILSSSHKFVSI 1269
Cdd:CHL00206 1195 PSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSI 1274

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1270 FHDIMHGS--AWSIPQKKLRAILPQWNLISEISSKCLQNLLLSEEMIHRnnESPVPLIWTHLRSPNPREFFYSSLFLLLV 1347
Cdd:CHL00206 1275 FHDIMHGSdiSWRILQKKLGLKLPQWNLISEISSKCLHNLLLSEEMIHR--ESESPLIWTHLRSPNVREFLYSILFLLLV 1352

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1348 AGYLVRTHLLFVSRVSSELHTELEKIKSLMIPSYMMELRKLLDSYPPPELNSFWLKNLFLVALEQLGDSPEEIRGsdSGG 1427
Cdd:CHL00206 1353 AGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRG--SGG 1430

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1428 NMLLGGGPAYGVKSIRSKKKdlnINLIDIIDLISIIPNPVNPITFSINTRRLSRTSKEIYSLIRKRKNVNSDWIDGKIES 1507
Cdd:CHL00206 1431 NMLLGGGPAYGVKSIRSKKK---YLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIES 1507

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1508 WVANSDLIDDEEREFLVQFSALTTEKRIDQILWSLTHSDPFSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNSEFNRSCL 1587
Cdd:CHL00206 1508 WVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCL 1587

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1588 AERRIFLAHYQTITYSQTSCGANSSHFPSHGKPFSLRLDLSPSRGILVIGSIGTGRSYLVKYLATNSYLPSITVSPNKFL 1667
Cdd:CHL00206 1588 AERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1668 DDKPKGYliddiddsddidlddsNSIDDSDDVDIGDSDDIDIDDDLDAELLTMTNVLTMYMTPKMDRFDITPQLELAKAM 1747
Cdd:CHL00206 1668 DNKPKGF----------------LIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAM 1731

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1748 SPCIIWIPNIHDLYVNESNYLSLGLLVNHLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKSNTCIKIRRLLIPQQRK 1827
Cdd:CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1828 HFFILSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDH 1907
Cdd:CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDH 1891

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1908 GILFYQIGRSFAQNVLLSNCSIDPISTYMKKKSCKEGDSYLYKWYFELGTSIKKLTTLLYLLSCSAGSVAQDLWSPPGPD 1987
Cdd:CHL00206 1892 GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPD 1971

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1988 EKNWITSYGFVENDSDLVHGLLE--GALVGSSRTEKDCSQFDNDRVTLLLRSEPRNPLDMMQNGSCSIVDQRFLYEKYES 2065
Cdd:CHL00206 1972 EKNGITSYGLVENDSDLVHGLLEveGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYES 2051

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  2066 EFEEGEGEGTLDPQQIEEDLFNHIVWAPRIWRPCGNLFDCIERPNESRFPYRSRSFRGKQIISHKEDELQENDLEFLQSG 2145
Cdd:CHL00206 2052 EFEEGESEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSG 2131

                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  2146 TMQYQTRDRSSKEQGFFQISQFIWDPADPFFFLFKDQPFVSVFARREFFADEEMSKGLITSQTHSPTSIYERWLIKNTQE 2225
Cdd:CHL00206 2132 TMQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQE 2211

                        2250      2260      2270      2280      2290      2300      2310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47117378  2226 KHFELLIHRQRWLSTNSSLSNGSFRSNTPSESYQYLSNLFLSNGTLLDQMAKTLLRKRWLFPDEMKhlIHVT 2297
Cdd:CHL00206 2212 KHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMK--IGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1483 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2901.68  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378      1 MKGHQLKSWIFELREILREIKNSHYFLDSWTKLNLVGSFTHIFFHQERFMKLFDPRIWSILLSCDSQSSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378     81 VLLVVAVLIYRINNRNMVERKNLYLMRLLPIPMNSIGPRNDTLEESFLSSNINRLIVSLLYLPKGKKISESCFMDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    161 WLLPITKKCIMPESNWGSRWWRNRIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVSYTDtdDPIRKDHDLELFDR 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMD--DPIRKDHDWELFDR 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    241 LSPGKKQNIINLNSGQLFEILVKHLICYLMSAFREKRPIEVEGFFKQQGAEATIQSNDIEHVPRLFSgnKNKWGISLQNC 320
Cdd:pfam05695  239 LSPRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFS--RNKWAISLQNC 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    321 AQFHMWQFHQDLFVSWGKNQHESDFLRNVSRENLIWLGSMWLVNKDRFFSKVRNVSSNIQYDSTRSIFVKVTDSSQLKGS 400
Cdd:pfam05695  317 AQFHMWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGS 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    401 SDQSRDHFNSISNEDSEYHTLIHQTEIEQLKERSILWDPSFLQTERTEIESDRFPKCLSGYFSMSRLFTEREKQMNNHLF 480
Cdd:pfam05695  397 SDQSRDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLL 476

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    481 PEEIEEFIGNPTRSIRSFFSDRWSELHLGSNATERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHP 560
Cdd:pfam05695  477 PEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHP 556

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    561 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFCDLFHLFHGRNKGGYTLHHDFESEERFQERADLFTLSITEPDLMYHKGF 640
Cdd:pfam05695  557 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGF 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    641 AFSIDSYGLDQKKLLNEVFNSRDESKKKSLLVLPHIFYEENESFYRRIRTKSVRISCRNGLED--PKIVVFASNNIMEAV 718
Cdd:pfam05695  637 AFSIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDpkPKIVVFASNNIMEAV 716

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    719 NQYRLIRNLIQIQYSTYGYIRNVSKRFFLMNRSDRNFEYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL- 797
Cdd:pfam05695  717 NQYRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLi 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    798 -ISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSEVIDKQDLSKSLRFFLSKSLL 876
Cdd:pfam05695  797 fISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLL 876

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    877 FLSK-------SLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLNKLKPFLLDDHDTSQRSKLLING 949
Cdd:pfam05695  877 FLSKfllflsnSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLING 956

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    950 GTIARFWFNKIPKWMIDSFHTRNNRGKSFENTDSYFSMISHDRDNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFWFY 1029
Cdd:pfam05695  957 GTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1030 CNKRFPFYAEKTRINNYDLTYGQFLNISFIRNKIFSLCVGKKKHVFLERDTIspSPIESQVSDIFIPNDFPQSGDETYNL 1109
Cdd:pfam05695 1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTI--SPIESQVSNIFIPNDFPQSGDETYNL 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1110 YKSFHFPTRSDPFVRRAIYSIADISGTPLTEEQRVNFEGTYCQPLSDLNLSDSEGKNLHQYLSFNSNMGLIHTPCSEKYL 1189
Cdd:pfam05695 1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1190 PSGKRKKRNLCLNKCVEKRQMYRTFQRDSAFSNISKWNLFQTYMPWFLTSTGCKYINFILLDTFSDPLPILSSSHKFVSI 1269
Cdd:pfam05695 1195 PSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSI 1274

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1270 FHDIMHGS--AWSIPQKKLraILPQWNLISEISSKCLQNLLLSEEMIHRNNESpvPLIWTHLRSPNPREFFYSSLFLLLV 1347
Cdd:pfam05695 1275 FHDIMHGSdiLWRIRQKKL--CLPQWNLISEISSKCLHNLLLSEEMIHRNNES--PLISTHLRSPNVREFFYSILFLLLV 1350

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1348 AGYLVRTHLLFVSRVSSELHTELEKIKSLMIPSYMMELRKLLDSYPPPELNSFWLKNLFLVALEQLGDSPEEIRGSDSGG 1427
Cdd:pfam05695 1351 AGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSASGG 1430

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 47117378   1428 NMLLGGGPAYGVKSIRSKKKDLNINLIDIIDLISIIPNPVNPITFSINTRRLSRTS 1483
Cdd:pfam05695 1431 NMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1619-1817 1.02e-69

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 231.50  E-value: 1.02e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378 1619 KPFSLRLDLSPSRGILVIGSIGTGRSYLVKYLATNSYLPSITVSPNKFLDDKPKGYLIDDIDDSddidlddsnsiddsdd 1698
Cdd:cd19505    1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDGM---------------- 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378 1699 vdigdsddididddldaelltmtnvltmyMTPKMDRFDITPQLELAKAMSPCIIWIPNIHDLYVN-------ESNYLSLG 1771
Cdd:cd19505   65 -----------------------------LILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLG 115

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 47117378 1772 LLVNHLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKSNTCIKI 1817
Cdd:cd19505  116 LLLNYLSRDFEKSSTRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
 
Name Accession Description Interval E-value
ycf2 CHL00206
Ycf2; Provisional
 1-2297 0e+00

Ycf2; Provisional


Pssm-ID: 214396 [Multi-domain]  Cd Length: 2281  Bit Score: 4101.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378     1 MKGHQLKSWIFELREILREIKNSHYFLDSWTKLNLVGSFTHIFFHQERFMKLFDPRIWSILLSCDSQSSTSNRYFTIKGV 80
Cdd:CHL00206    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRILSILLSRNSQGSTSNRYFTIKGV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    81 VLLVVAVLIYRINNRNMVERKNLYLMRLLPIPMNSIGPRNDTLEESFLSSNINRLIVSLLYLPKGKKISESCFMDPKEST 160
Cdd:CHL00206   81 VLLVVAVLIYRINNRNMVERKNLYLTGLLPIPMNSIGPRNDTLEESFGSSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   161 WLLPITKKCIMPESNWGSRWWRNRIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVSYTDtdDPIRKDHDLELFDR 240
Cdd:CHL00206  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMD--DPIRKDHDWELFDR 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   241 LSPGKKQNIINLNSGQLFEILVKHLICYLMSAFREKRPIEVEGFFKQQGAEATIQSNDIEHVPRLFSgnKNKWGISLQNC 320
Cdd:CHL00206  239 LSPRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFS--RNKWAISLQNC 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   321 AQFHMWQFHQDLFVSWGKNQHESDFLRNVSRENLIWLGSMWLVNKDRFFSKVRNVSSNIQYDSTRSIFVKVTDSSQLKGS 400
Cdd:CHL00206  317 AQFHMWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGS 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   401 SDQSRDHFNSISNEDSEYHTLIHQTEIEQLKERSILWDPSFLQTERTEIESDRFPKCLSGYFSMSRLFTEREKQMNNHLF 480
Cdd:CHL00206  397 SDQSRDHFDSISNEDSEYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLL 476

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   481 PEEIEEFIGNPTRSIRSFFSDRWSELHLGSNATERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHP 560
Cdd:CHL00206  477 PEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEIVDIFKIITYLQNTVSIHP 556

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   561 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFCDLFHLFHGRNKGGYTLHHDFESEERFQERADLFTLSITEPDLMYHKGF 640
Cdd:CHL00206  557 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFFDLFHLFHDRNRGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGF 636

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   641 AFSIDSYGLDQKKLLNEVFNSRDESKKKSLLVLPHIFYEENESFYRRIRTKSVRISCRNGLEDP--KIVVFASNNIMEAV 718
Cdd:CHL00206  637 AFSIDSYGLDQKQFLNEVFNSRDESKKKSLLVLPPIFYEENESFYRRIRKKWVRISCGNDLEDPkpKIVVFASNNIMEAV 716

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   719 NQYRLIRNLIQIQYSTYGYIRNVSKRFFLMNRSDRNFEYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL- 797
Cdd:CHL00206  717 NQYRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLi 796

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   798 -ISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSEVIDKQDLSKSLRFFLSKSLL 876
Cdd:CHL00206  797 fISRTERSMNRDPDAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKLLL 876

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   877 F-------LSKSLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLNKLKPFLLDDHDTSQRSKLLING 949
Cdd:CHL00206  877 FlskkllfLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIVHLKKLKPFLLDDHDTSQKSKFLING 956

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   950 GTIARFWFNKIPKWMIDSFHTRNNRGKSFENTDSYFSMISHDRDNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFWFY 1029
Cdd:CHL00206  957 GTISPFLFNKIPKWMIDSFHTRINRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1030 CNKRFPFYAEKTRINNYDLTYGQFLNISFIRNKIFSLCVGKKKHVFLERDTIspSPIESQVSDIFIPNDFPQSGDETYNL 1109
Cdd:CHL00206 1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDTI--SPIESQVSNIFIPNDFPQSGDETYNL 1114

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1110 YKSFHFPTRSDPFVRRAIYSIADISGTPLTEEQRVNFEGTYCQPLSDLNLSDSEGKNLHQYLSFNSNMGLIHTPCSEKYL 1189
Cdd:CHL00206 1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1190 PSGKRKKRNLCLNKCVEKRQMYRTFQRDSAFSNISKWNLFQTYMPWFLTSTGCKYINFILLDTFSDPLPILSSSHKFVSI 1269
Cdd:CHL00206 1195 PSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSILSKWNLFQTYMPWFFTSTGWKYLNLIFLDTFSDLLPILSSSQKFVSI 1274

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1270 FHDIMHGS--AWSIPQKKLRAILPQWNLISEISSKCLQNLLLSEEMIHRnnESPVPLIWTHLRSPNPREFFYSSLFLLLV 1347
Cdd:CHL00206 1275 FHDIMHGSdiSWRILQKKLGLKLPQWNLISEISSKCLHNLLLSEEMIHR--ESESPLIWTHLRSPNVREFLYSILFLLLV 1352

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1348 AGYLVRTHLLFVSRVSSELHTELEKIKSLMIPSYMMELRKLLDSYPPPELNSFWLKNLFLVALEQLGDSPEEIRGsdSGG 1427
Cdd:CHL00206 1353 AGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRG--SGG 1430

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1428 NMLLGGGPAYGVKSIRSKKKdlnINLIDIIDLISIIPNPVNPITFSINTRRLSRTSKEIYSLIRKRKNVNSDWIDGKIES 1507
Cdd:CHL00206 1431 NMLLGGGPAYGVKSIRSKKK---YLNINLIDIIDLIPNPINRITFSRNTRHLSHTSKEIYSLIRKRKNVNGDWIDDKIES 1507

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1508 WVANSDLIDDEEREFLVQFSALTTEKRIDQILWSLTHSDPFSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNSEFNRSCL 1587
Cdd:CHL00206 1508 WVANSDSIDDEEREFLVQFSTLTTEKRIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCL 1587

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1588 AERRIFLAHYQTITYSQTSCGANSSHFPSHGKPFSLRLDLSPSRGILVIGSIGTGRSYLVKYLATNSYLPSITVSPNKFL 1667
Cdd:CHL00206 1588 AERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1668 DDKPKGYliddiddsddidlddsNSIDDSDDVDIGDSDDIDIDDDLDAELLTMTNVLTMYMTPKMDRFDITPQLELAKAM 1747
Cdd:CHL00206 1668 DNKPKGF----------------LIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAM 1731

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1748 SPCIIWIPNIHDLYVNESNYLSLGLLVNHLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKSNTCIKIRRLLIPQQRK 1827
Cdd:CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1828 HFFILSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDH 1907
Cdd:CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDH 1891

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1908 GILFYQIGRSFAQNVLLSNCSIDPISTYMKKKSCKEGDSYLYKWYFELGTSIKKLTTLLYLLSCSAGSVAQDLWSPPGPD 1987
Cdd:CHL00206 1892 GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLTILLYLLSCSAGSVAQDLWSLPGPD 1971

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  1988 EKNWITSYGFVENDSDLVHGLLE--GALVGSSRTEKDCSQFDNDRVTLLLRSEPRNPLDMMQNGSCSIVDQRFLYEKYES 2065
Cdd:CHL00206 1972 EKNGITSYGLVENDSDLVHGLLEveGALVGSSRTEKDCSQFDNDRVTLLLRPEPRNPLDMMQNGSCSIVDQRFLYEKYES 2051

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  2066 EFEEGEGEGTLDPQQIEEDLFNHIVWAPRIWRPCGNLFDCIERPNESRFPYRSRSFRGKQIISHKEDELQENDLEFLQSG 2145
Cdd:CHL00206 2052 EFEEGESEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDEEDELQENDSEFLQSG 2131

                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378  2146 TMQYQTRDRSSKEQGFFQISQFIWDPADPFFFLFKDQPFVSVFARREFFADEEMSKGLITSQTHSPTSIYERWLIKNTQE 2225
Cdd:CHL00206 2132 TMQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSRREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQE 2211

                        2250      2260      2270      2280      2290      2300      2310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47117378  2226 KHFELLIHRQRWLSTNSSLSNGSFRSNTPSESYQYLSNLFLSNGTLLDQMAKTLLRKRWLFPDEMKhlIHVT 2297
Cdd:CHL00206 2212 KHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLRKRWLFPDEMK--IGFM 2281
DUF825 pfam05695
Plant protein of unknown function (DUF825); This family consists of several plant proteins ...
 1-1483 0e+00

Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown.


Pssm-ID: 283375  Cd Length: 1486  Bit Score: 2901.68  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378      1 MKGHQLKSWIFELREILREIKNSHYFLDSWTKLNLVGSFTHIFFHQERFMKLFDPRIWSILLSCDSQSSTSNRYFTIKGV 80
Cdd:pfam05695    1 MKGHQFKSWIFELREILREIKNSHYFLDSWTQFNSVGSFIHIFFHQERFIKLFDPRIWSILLSRNSQGSTSNRYFTIKGV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378     81 VLLVVAVLIYRINNRNMVERKNLYLMRLLPIPMNSIGPRNDTLEESFLSSNINRLIVSLLYLPKGKKISESCFMDPKEST 160
Cdd:pfam05695   81 VLFVVAVLIYRINNRNMVERKNLYLTRLLPIPMNSIGPRNDTLEESFESSNINRLIVSLLYLPKGKKISESCFLDPKEST 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    161 WLLPITKKCIMPESNWGSRWWRNRIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVSYTDtdDPIRKDHDLELFDR 240
Cdd:pfam05695  161 WVLPITKKCIMPESNWGSRWWRNWIGKKRDSSCKISNETVAGIEISFKEKDIKYLEFLFVYYMD--DPIRKDHDWELFDR 238

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    241 LSPGKKQNIINLNSGQLFEILVKHLICYLMSAFREKRPIEVEGFFKQQGAEATIQSNDIEHVPRLFSgnKNKWGISLQNC 320
Cdd:pfam05695  239 LSPRKRRNIINLNSGQLFEILVKHWICYLMSAFREKIPIEVEGFFKQQGAGSTIQSNDIEHVSHLFS--RNKWAISLQNC 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    321 AQFHMWQFHQDLFVSWGKNQHESDFLRNVSRENLIWLGSMWLVNKDRFFSKVRNVSSNIQYDSTRSIFVKVTDSSQLKGS 400
Cdd:pfam05695  317 AQFHMWQFRQDLFVSWGKNPHESDFLRNVSRENWIWLDNVWLVNKDRFFSKVRNVSSNIQYDSTRSSFVQVTDSSQLKGS 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    401 SDQSRDHFNSISNEDSEYHTLIHQTEIEQLKERSILWDPSFLQTERTEIESDRFPKCLSGYFSMSRLFTEREKQMNNHLF 480
Cdd:pfam05695  397 SDQSRDHFDSISNEDSKYHTLINQREIQQLKERSILWDPSFLQTERTEIESDRFPKCLSGYSSMSRLFTEREKQMNNHLL 476

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    481 PEEIEEFIGNPTRSIRSFFSDRWSELHLGSNATERSTRDQKLLKKQQDVSFVPSRRSENKEMVDIFKIITYLQNTVSIHP 560
Cdd:pfam05695  477 PEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQQDVSFVPSRRSENKEMVNIFKIITYLQNTVSIHP 556

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    561 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFCDLFHLFHGRNKGGYTLHHDFESEERFQERADLFTLSITEPDLMYHKGF 640
Cdd:pfam05695  557 ISSDPGCDMVPKDEPDMDSSNKISFLNKNPFWDLFHLFHDRNSGGYTLHHDFESEERFQEMADLFTLSITEPDLVYHKGF 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    641 AFSIDSYGLDQKKLLNEVFNSRDESKKKSLLVLPHIFYEENESFYRRIRTKSVRISCRNGLED--PKIVVFASNNIMEAV 718
Cdd:pfam05695  637 AFSIDSYGLDQKHFLNEVFNSRDESKKKSLLVLPPLFYEENESFYRRIRKKWVRISCGNNLEDpkPKIVVFASNNIMEAV 716

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    719 NQYRLIRNLIQIQYSTYGYIRNVSKRFFLMNRSDRNFEYGIQRDQIGNDTLNHITIMKYTINQHLSNLKKSQKKWFDPL- 797
Cdd:pfam05695  717 NQYRLIRNLIQIQYSTYGYIRNVLNRFFLMNRSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLi 796

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    798 -ISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKNRFQVVFDRLRINQHSIDWSEVIDKQDLSKSLRFFLSKSLL 876
Cdd:pfam05695  797 fISRTERSMNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLL 876

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    877 FLSK-------SLPFFFVSIGNIPIHRSEIHIYELKGPNDQLCNQLLESIGVQIVHLNKLKPFLLDDHDTSQRSKLLING 949
Cdd:pfam05695  877 FLSKfllflsnSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQIFHLKKWKPFLLDDHDTSQKSKFLING 956

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378    950 GTIARFWFNKIPKWMIDSFHTRNNRGKSFENTDSYFSMISHDRDNWLNPVKPFHRSSLISSFYKANQLRFLNNPHHFWFY 1029
Cdd:pfam05695  957 GTISPFLFNKIPKWMIDSFHTRNNRRKSFDNTDSYFSMISHDPDNWLNPVKPFHRSSLISSFYKANRLRFLNNPHHFCFY 1036

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1030 CNKRFPFYAEKTRINNYDLTYGQFLNISFIRNKIFSLCVGKKKHVFLERDTIspSPIESQVSDIFIPNDFPQSGDETYNL 1109
Cdd:pfam05695 1037 CNKRFPFYVEKARINNYDFTYGQFLNILFIRNKIFSLCDGKKKHAFLERDTI--SPIESQVSNIFIPNDFPQSGDETYNL 1114

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1110 YKSFHFPTRSDPFVRRAIYSIADISGTPLTEEQRVNFEGTYCQPLSDLNLSDSEGKNLHQYLSFNSNMGLIHTPCSEKYL 1189
Cdd:pfam05695 1115 YKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQIVNFEKTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYL 1194

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1190 PSGKRKKRNLCLNKCVEKRQMYRTFQRDSAFSNISKWNLFQTYMPWFLTSTGCKYINFILLDTFSDPLPILSSSHKFVSI 1269
Cdd:pfam05695 1195 PSEKRKKRSLCLKKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSI 1274

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1270 FHDIMHGS--AWSIPQKKLraILPQWNLISEISSKCLQNLLLSEEMIHRNNESpvPLIWTHLRSPNPREFFYSSLFLLLV 1347
Cdd:pfam05695 1275 FHDIMHGSdiLWRIRQKKL--CLPQWNLISEISSKCLHNLLLSEEMIHRNNES--PLISTHLRSPNVREFFYSILFLLLV 1350

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378   1348 AGYLVRTHLLFVSRVSSELHTELEKIKSLMIPSYMMELRKLLDSYPPPELNSFWLKNLFLVALEQLGDSPEEIRGSDSGG 1427
Cdd:pfam05695 1351 AGYLVRTHLLFVSRVSSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIRGSASGG 1430

                         1450      1460      1470      1480      1490
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 47117378   1428 NMLLGGGPAYGVKSIRSKKKDLNINLIDIIDLISIIPNPVNPITFSINTRRLSRTS 1483
Cdd:pfam05695 1431 NMLLGGGPAYGVKSIRSKKKYLNINLIDIIDLISIIPNPINRITFSRNTRHLSHTS 1486
RecA-like_Ycf2 cd19505
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ...
 1619-1817 1.02e-69

ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410913 [Multi-domain]  Cd Length: 161  Bit Score: 231.50  E-value: 1.02e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378 1619 KPFSLRLDLSPSRGILVIGSIGTGRSYLVKYLATNSYLPSITVSPNKFLDDKPKGYLIDDIDDSddidlddsnsiddsdd 1698
Cdd:cd19505    1 KPFSLRLGLSPSKGILLIGSIETGRSYLIKSLAANSYVPLIRISLNKLLYNKPDFGNDDWIDGM---------------- 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378 1699 vdigdsddididddldaelltmtnvltmyMTPKMDRFDITPQLELAKAMSPCIIWIPNIHDLYVN-------ESNYLSLG 1771
Cdd:cd19505   65 -----------------------------LILKESLHRLNLQFELAKAMSPCIIWIPNIHELNVNrstqnleEDPKLLLG 115

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 47117378 1772 LLVNHLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKSNTCIKI 1817
Cdd:cd19505  116 LLLNYLSRDFEKSSTRNILVIASTHIPQKVDPALIAPNRLDTCINI 161
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1620-1809 3.50e-06

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 49.20  E-value: 3.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378 1620 PFSLRLDLSPSRGILVIGSIGTGRSYLVKYLATNSYLPSITVSpnkflddkpkgyliddiddsddidlddsnsiddsddv 1699
Cdd:cd19481   16 SRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVK------------------------------------- 58

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47117378 1700 digdsddididddldaelltMTNVLTMYMTPKMDRfdITPQLELAKAMSPCIIWIPNIHDL-----YVNESNYLSLglLV 1774
Cdd:cd19481   59 --------------------LSSLLSKYVGESEKN--LRKIFERARRLAPCILFIDEIDAIgrkrdSSGESGELRR--VL 114

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 47117378 1775 NHLSRDCERCSTRN-ILVIASTHIPQKVDPALIAPN 1809
Cdd:cd19481  115 NQLLTELDGVNSRSkVLVIAATNRPDLLDPALLRPG 150
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1741-1806 6.55e-05

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 44.89  E-value: 6.55e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47117378   1741 LELAKAMSPCIIWIPNIHDLYVNESNYLS------LGLLVNHLSRdcERCSTRNILVIASTHIPQKVDPALI 1806
Cdd:pfam00004   50 FEAAKKLAPCVIFIDEIDALAGSRGSGGDsesrrvVNQLLTELDG--FTSSNSKVIVIAATNRPDKLDPALL 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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