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Conserved domains on  [gi|47028041|gb|AAT09044|]
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envelope glycoprotein, partial [Shokwe virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Bunya_G2 super family cl04159
Bunyavirus glycoprotein G2; Bunyavirus has three genomic segments: small (S), middle-sized (M), ...
 21-158 4.40e-73

Bunyavirus glycoprotein G2; Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This family contains the G2 glycoprotein which interacts with the pfam03557 G1 glycoprotein.


The actual alignment was detected with superfamily member pfam03563:

Pssm-ID: 397566  Cd Length: 281  Bit Score: 220.57  E-value: 4.40e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47028041    21 RCFHGGALIKERISTTSISEFCLKDDVSMIKSEITYQKNDTGIFGHSKIFRNWIVKEWKACNPVPSAGGSINVIEINDDM 100
Cdd:pfam03563   1 RCFSGGTLIKEKNSTTGLSELCLKDDISMIKSESDYDKNDTGIFATNKAYRKWTVKDWKDCNPVPDENGPINVLDVDKDG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 47028041   101 SLATKNYICTRDCTITVDKEDAQIIFQTDKLNHFEVSGTTLSSGWFKTKASVTLDRTC 158
Cdd:pfam03563  81 MLITKTYACRKDCEITIDKENAEIILSSEGLNHYEISGTTIKSGWFKNTTSISLEQTC 138
 
Name Accession Description Interval E-value
Bunya_G2 pfam03563
Bunyavirus glycoprotein G2; Bunyavirus has three genomic segments: small (S), middle-sized (M), ...
 21-158 4.40e-73

Bunyavirus glycoprotein G2; Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This family contains the G2 glycoprotein which interacts with the pfam03557 G1 glycoprotein.


Pssm-ID: 397566  Cd Length: 281  Bit Score: 220.57  E-value: 4.40e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47028041    21 RCFHGGALIKERISTTSISEFCLKDDVSMIKSEITYQKNDTGIFGHSKIFRNWIVKEWKACNPVPSAGGSINVIEINDDM 100
Cdd:pfam03563   1 RCFSGGTLIKEKNSTTGLSELCLKDDISMIKSESDYDKNDTGIFATNKAYRKWTVKDWKDCNPVPDENGPINVLDVDKDG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 47028041   101 SLATKNYICTRDCTITVDKEDAQIIFQTDKLNHFEVSGTTLSSGWFKTKASVTLDRTC 158
Cdd:pfam03563  81 MLITKTYACRKDCEITIDKENAEIILSSEGLNHYEISGTTIKSGWFKNTTSISLEQTC 138
 
Name Accession Description Interval E-value
Bunya_G2 pfam03563
Bunyavirus glycoprotein G2; Bunyavirus has three genomic segments: small (S), middle-sized (M), ...
 21-158 4.40e-73

Bunyavirus glycoprotein G2; Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This family contains the G2 glycoprotein which interacts with the pfam03557 G1 glycoprotein.


Pssm-ID: 397566  Cd Length: 281  Bit Score: 220.57  E-value: 4.40e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47028041    21 RCFHGGALIKERISTTSISEFCLKDDVSMIKSEITYQKNDTGIFGHSKIFRNWIVKEWKACNPVPSAGGSINVIEINDDM 100
Cdd:pfam03563   1 RCFSGGTLIKEKNSTTGLSELCLKDDISMIKSESDYDKNDTGIFATNKAYRKWTVKDWKDCNPVPDENGPINVLDVDKDG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 47028041   101 SLATKNYICTRDCTITVDKEDAQIIFQTDKLNHFEVSGTTLSSGWFKTKASVTLDRTC 158
Cdd:pfam03563  81 MLITKTYACRKDCEITIDKENAEIILSSEGLNHYEISGTTIKSGWFKNTTSISLEQTC 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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