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Conserved domains on  [gi|470235905|ref|YP_007627076|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Ommexecha virens]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.03e-39

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.36  E-value: 1.03e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   3 TLSMSFMITFIVPMLVMTIATMLSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 470235905  83 TSNMMVWSTSTMFFILVLLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.03e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.36  E-value: 1.03e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   3 TLSMSFMITFIVPMLVMTIATMLSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 470235905  83 TSNMMVWSTSTMFFILVLLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.11e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 81.70  E-value: 1.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   19 MTIATMLSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIMKtSNMMVWSTSTMFFIL 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 470235905   99 VLLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 5.60e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 75.54  E-value: 5.60e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   8 FMITFIVPMLVMTIATMLSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALilpiiiimktsnMM 87
Cdd:COG0838   12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVF------------LF 78

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 470235905  88 VWSTS-----------TMFFILVLLGGLYHEWNQGALQW 115
Cdd:COG0838   79 PWAVVfrelgwfglieMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 1.03e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.36  E-value: 1.03e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   3 TLSMSFMITFIVPMLVMTIATMLSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 470235905  83 TSNMMVWSTSTMFFILVLLGGLYHEWNQGALQW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 5.82e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 123.81  E-value: 5.82e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   1 MLTLSMSFMITFIVPMLVMTIATMLSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 470235905  81 MKTSNMMVWSTSTMFFILVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.15e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 113.16  E-value: 1.15e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   1 MLTLSMSFMITFIVPMLVMTIATMLSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 470235905  81 MKTSNMMVWSTSTMFFILVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 7.31e-31

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 106.10  E-value: 7.31e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   1 MLTLSMSFMITFIVPMLVMTIATMLSKKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIII 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 470235905  81 MKTSNMMVWSTSTMFFILVLLGGLYHEWNQGALQWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 6-117 9.02e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 90.43  E-value: 9.02e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   6 MSFMITFIVPMLVMTIATMLSKKII----NDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIM 81
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLpsrsPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 470235905  82 KTSNMMVWSTSTMFFILVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-117 1.16e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 90.00  E-value: 1.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   2 LTLSMSFMITFIVPMLVMTIATMLSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIM 81
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 470235905  82 KTSNMMVWSTSTMFFILVLLGGLYHEWNQGALQWAE 117
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-116 2.31e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 89.17  E-value: 2.31e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   1 MLTLSMsFMITFIVPMLVMTIATMLSKkIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIII 80
Cdd:MTH00113   1 MNLISM-LTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 78

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 470235905  81 MKTSNMMVWSTSTMFFILVLLGGLYHEWNQGALQWA 116
Cdd:MTH00113  79 INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-117 8.71e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 87.74  E-value: 8.71e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905  16 MLVMTIATMLSKKIIN----------DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI---IIIMK 82
Cdd:MTH00069   3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 470235905  83 TSNMMVWSTstmfFILVLLG-GLYHEWNQGALQWAE 117
Cdd:MTH00069  83 PTNTLFWST----LILILLTlGLIYEWIQGGLEWAE 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 16-117 2.88e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 86.51  E-value: 2.88e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905  16 MLVMTIATMLS----------KKIINDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI---IIIMK 82
Cdd:MTH00136   5 TTILTITIALSlilaivsfwlPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgDQLPS 84

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 470235905  83 TSNMMVWSTStmffILVLLG-GLYHEWNQGALQWAE 117
Cdd:MTH00136  85 PLLTFFWATA----VLILLTlGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.11e-21

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 81.70  E-value: 1.11e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   19 MTIATMLSKKIINdREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIMKtSNMMVWSTSTMFFIL 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 470235905   99 VLLGGLYHEWNQGALQ 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 4.40e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 80.71  E-value: 4.40e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   1 MLTLSMSFMITFIVPMLVMTIATMLSKKIInDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIII 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNP-DGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 470235905  81 MKTSNmmVWSTSTMFFILVLLGGLYHEWNQGALQW 115
Cdd:MTH00203  80 NQLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-116 2.21e-19

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 76.83  E-value: 2.21e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   8 FMITFIVPMLVMTIATMLSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIMKTSNMM 87
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWL 93

                         90       100
                 ....*....|....*....|....*....
gi 470235905  88 VWsTSTMFFILVLLGGLYHEWNQGALQWA 116
Cdd:PRK06602  94 GF-VEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 8-115 5.60e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 75.54  E-value: 5.60e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   8 FMITFIVPMLVMTIATMLSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALilpiiiimktsnMM 87
Cdd:COG0838   12 LLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVF------------LF 78

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 470235905  88 VWSTS-----------TMFFILVLLGGLYHEWNQGALQW 115
Cdd:COG0838   79 PWAVVfrelgwfglieMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-115 6.50e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 65.08  E-value: 6.50e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   8 FMITFIVPMLVMTIATMLSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIIIMKTSNMM 87
Cdd:MTH00018   7 LIFSVVLSALFSGASYFLGVKQ-PDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPF 85

                         90       100
                 ....*....|....*....|....*...
gi 470235905  88 VWSTsTMFFILVLLGGLYHEWNQGALQW 115
Cdd:MTH00018  86 GFWT-MVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-115 5.73e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 62.80  E-value: 5.73e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   4 LSMSFMITFIVPMLVMTIATMLS--KKIIN----DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPI 77
Cdd:MTH00055   1 MSMEFLGIFILLLFSIGLSTVISgaSYIVGvkqpDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 470235905  78 IIIMKTSNMMVWSTSTMFFILVLLGGLYhEWNQGALQW 115
Cdd:MTH00055  81 CVVYNQIGLFGFWVMYLFLIILTIGLIY-EWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-115 4.03e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 58.41  E-value: 4.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   3 TLSMSFMITFIVPMLVMTIATMLSKKIIN----DREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPII 78
Cdd:MTH00030   7 TIFFSTLLGVGIILLLVSISFTLGNSRIGltkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 470235905  79 IIMKTSNMM-VWSTSTmfFILVLLGGLYHEWNQGALQW 115
Cdd:MTH00030  87 IVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-115 1.37e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 46.27  E-value: 1.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   7 SFMITFI-------VPMLVMTIATMLSKKIINDrEKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIII 79
Cdd:PRK07756   8 SYMIVLIflllgilLPVVALTLGRMLRPNKPSA-AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAV 86

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 470235905  80 IMKTSNMMVWsTSTMFFILVLLGGLYHEWNQGALQW 115
Cdd:PRK07756  87 AYDKLGLFAL-IEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
8-115 2.49e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 43.12  E-value: 2.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   8 FMITFIVPMLVMTIATMLSKKIIN-DRE--KSSPFECGFDP-KSSARMpfSLRFFLIAVIFLIFDVEIALILPIIIIMKT 83
Cdd:PRK08489  17 LVLTFVAFFLTTRLARFISRKLAQkNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFKL 94

                         90       100       110
                 ....*....|....*....|....*....|..
gi 470235905  84 SNMMVWSTSTMFFILVLLGGLYhEWNQGALQW 115
Cdd:PRK08489  95 LGLFGLIEMLLFIVLLTIGFIY-AWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 9.54e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.42  E-value: 9.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905   1 MLTLSMSFMITFIVPMLVMTIATMLSKKIiNDREKSSPFECGFDPKSSARMPFSLRFFLIAVIFLIFDVEIALILPIIII 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 470235905  81 MKTSNMMVWststmFFILVLLGGLYHEWNQGALQW 115
Cdd:MTH00092  80 DFSSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 1.48e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 35.80  E-value: 1.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470235905  19 MTIATMLSKKIINdREKSSPFECGFDPKSSARMP--FSLRFFLIAVIFLIFDVEIALILPIIIIMKTSNMMVWSTSTMFF 96
Cdd:PRK07928  22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFM 100

                         90
                 ....*....|....*....
gi 470235905  97 ILVLLGGLYhEWNQGALQW 115
Cdd:PRK07928 101 LTVFVAYAY-VWRRGGLEW 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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