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Conserved domains on  [gi|470226966|ref|YP_007624618|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Zanda latirostris]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 577.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   6 TPPAYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPML 85
Cdd:MTH00111   3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  86 ALLLALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLS 165
Cdd:MTH00111  83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 166 GNYTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 246 TTLLFLNPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPPY 325
Cdd:MTH00111 243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                 .
gi 470226966 326 L 326
Cdd:MTH00111 323 L 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 577.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   6 TPPAYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPML 85
Cdd:MTH00111   3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  86 ALLLALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLS 165
Cdd:MTH00111  83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 166 GNYTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 246 TTLLFLNPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPPY 325
Cdd:MTH00111 243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                 .
gi 470226966 326 L 326
Cdd:MTH00111 323 L 323
NADHdh pfam00146
NADH dehydrogenase;
13-301 4.50e-113

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.82  E-value: 4.50e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   13 MALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLALT 92
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   93 IW--IPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYTM 170
Cdd:pfam00146  81 AFavIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  171 STLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLLF 250
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 470226966  251 LNPSMLNLPSELFpLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:pfam00146 241 LGGWLGPFPLPGL-LWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVL 290
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 4.09e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.52  E-value: 4.09e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   1 MTWPNTPP-AYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLF 79
Cdd:COG1005    1 MSLLLAPLlITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  80 TTTPMLALLLALTIWIPLPL--PFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALI 157
Cdd:COG1005   81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 158 LLSTVMLSGNYTMSTLAISQE-PLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEY 236
Cdd:COG1005  161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 470226966 237 ANIMLMNTLTTLLFL----NPSMLNLPSELFPLI-LATKALLLSSSFLWVRASYPRFRYDQLMHLLWK 299
Cdd:COG1005  241 ANMFLVSALATTLFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWK 308
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 577.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   6 TPPAYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPML 85
Cdd:MTH00111   3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  86 ALLLALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLS 165
Cdd:MTH00111  83 ALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 166 GNYTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:MTH00111 163 GGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 246 TTLLFLNPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPPY 325
Cdd:MTH00111 243 TTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322


                 .
gi 470226966 326 L 326
Cdd:MTH00111 323 L 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 10-326 7.02e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 497.21  E-value: 7.02e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  10 YLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLL 89
Cdd:MTH00134   8 HIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  90 ALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYT 169
Cdd:MTH00134  88 ALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFT 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 170 MSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLL 249
Cdd:MTH00134 168 LQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAIL 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 470226966 250 FLNPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPPYL 326
Cdd:MTH00134 248 FLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-324 1.46e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 491.44  E-value: 1.46e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   5 NTPPAYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPM 84
Cdd:MTH00071   2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  85 LALLLALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVML 164
Cdd:MTH00071  82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 165 SGNYTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNT 244
Cdd:MTH00071 162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 245 LTTLLFLNPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPP 324
Cdd:MTH00071 242 LSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-326 3.70e-172

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 480.28  E-value: 3.70e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  10 YLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLL 89
Cdd:MTH00104   2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  90 ALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYT 169
Cdd:MTH00104  82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 170 MSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLL 249
Cdd:MTH00104 162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 470226966 250 FLNPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPPYL 326
Cdd:MTH00104 242 FLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 10-324 1.16e-140

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 400.06  E-value: 1.16e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  10 YLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLL 89
Cdd:MTH00218   4 SLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  90 ALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYT 169
Cdd:MTH00218  84 ALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 170 MSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLL 249
Cdd:MTH00218 164 LEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVIL 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 470226966 250 FLNPSMLnlpselfPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPP 324
Cdd:MTH00218 244 FLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 5-326 5.67e-138

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 393.57  E-value: 5.67e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   5 NTPPAYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPM 84
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  85 LALLLALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVML 164
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 165 SGNYTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNT 244
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 245 LTTLLFLNPSmlNLPSELFPL---ILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAG 321
Cdd:MTH00040 241 LSVILFLGGG--SPFNEIFPIniiIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNI 318


                 ....*
gi 470226966 322 MPPYL 326
Cdd:MTH00040 319 LPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 11-301 1.91e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 330.94  E-value: 1.91e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  11 LIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLA 90
Cdd:MTH00195   5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  91 LTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYTM 170
Cdd:MTH00195  85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 171 STLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLLF 250
Cdd:MTH00195 165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 470226966 251 LNPSMLnlpselfpLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:MTH00195 245 LGGGGT--------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCY 287
NADHdh pfam00146
NADH dehydrogenase;
13-301 4.50e-113

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 329.82  E-value: 4.50e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   13 MALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLALT 92
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   93 IW--IPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYTM 170
Cdd:pfam00146  81 AFavIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  171 STLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLLF 250
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 470226966  251 LNPSMLNLPSELFpLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:pfam00146 241 LGGWLGPFPLPGL-LWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVL 290
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 21-301 1.49e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 323.36  E-value: 1.49e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  21 ILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLALTIWIPLPLP 100
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 101 FPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYTMSTLAISQEPL 180
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 181 YLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLLFL-NPSMLNLp 259
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFgGSSVLFL- 252

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 470226966 260 seLFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:MTH00143 253 --LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSF 292
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 11-301 2.31e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 322.87  E-value: 2.31e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  11 LIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLA 90
Cdd:MTH00193   5 LINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  91 LTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYTM 170
Cdd:MTH00193  85 LLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 171 STLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLLF 250
Cdd:MTH00193 165 LDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMF 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 470226966 251 LNPSMLNLpseLFPLILatkaLLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:MTH00193 245 LGGDLLSL---LFYLKL----LFISFLFIWVRGTLPRFRYDKLMYLAWKSF 288
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 4.09e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.52  E-value: 4.09e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   1 MTWPNTPP-AYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLF 79
Cdd:COG1005    1 MSLLLAPLlITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  80 TTTPMLALLLALTIWIPLPL--PFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALI 157
Cdd:COG1005   81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 158 LLSTVMLSGNYTMSTLAISQE-PLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEY 236
Cdd:COG1005  161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 470226966 237 ANIMLMNTLTTLLFL----NPSMLNLPSELFPLI-LATKALLLSSSFLWVRASYPRFRYDQLMHLLWK 299
Cdd:COG1005  241 ANMFLVSALATTLFLggwlGPFPILPLGGLPGILwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWK 308
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 11-301 2.04e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 305.42  E-value: 2.04e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  11 LIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLA 90
Cdd:MTH00225   4 LLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  91 LTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYTM 170
Cdd:MTH00225  84 LILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 171 STLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLLF 250
Cdd:MTH00225 164 FDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILF 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 470226966 251 LNPSMLnlpseLFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:MTH00225 244 FGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSF 289
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 10-325 1.47e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 301.26  E-value: 1.47e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  10 YLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLL 89
Cdd:MTH00054   4 IIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  90 ALTIW--IPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGN 167
Cdd:MTH00054  84 AFIAWgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 168 YTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTT 247
Cdd:MTH00054 164 LNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGV 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 248 LLFLNPSM-LNLPSELFP--LILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPP 324
Cdd:MTH00054 244 ILFLGGWLvISGPTSYFSnfVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323


                 .
gi 470226966 325 Y 325
Cdd:MTH00054 324 F 324
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 10-324 1.63e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 301.27  E-value: 1.63e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  10 YLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLL 89
Cdd:MTH00216   8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  90 ALTIWIPLPLP--FPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGN 167
Cdd:MTH00216  88 ALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 168 YTMSTLAISQEP-LYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLT 246
Cdd:MTH00216 168 LSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 247 TLLFLNpSMLNLPSELF--PLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHTSMPISYAGMPP 324
Cdd:MTH00216 248 TILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-299 5.90e-100

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 297.10  E-value: 5.90e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966   1 MTWPNTPPAYLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFT 80
Cdd:PRK06076   3 LFGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  81 TTPMLALLLALTIWIPLPL--PFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALIL 158
Cdd:PRK06076  83 LAPVIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 159 LSTVMLSGNYTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYAN 238
Cdd:PRK06076 163 LAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYIN 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 470226966 239 IMLMNTLTTLLFL---NPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWK 299
Cdd:PRK06076 243 MILVSALITTLFLggwLPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWK 306
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 12-324 1.17e-83

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 256.48  E-value: 1.17e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  12 IMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLAL 91
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  92 TIW--IPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYT 169
Cdd:MTH00029  91 LAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 170 MSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLL 249
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 250 FLN------------PSMLNLPSELFPLILA----TKALLLSSSFLWVRASYPRFRYDQLMHLLWKNFLPLTLALLLWHT 313
Cdd:MTH00029 251 FLGgwlspldgiptpPEAFSIFEQIASSKSSfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTA 330

                        330
                 ....*....|.
gi 470226966 314 SMPISYAGMPP 324
Cdd:MTH00029 331 GILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 10-301 6.55e-81

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 248.16  E-value: 6.55e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  10 YLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLL 89
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  90 ALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYT 169
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 170 MSTLAISQEPlYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLL 249
Cdd:MTH00010 165 FSKIIMSQYS-WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 470226966 250 FlnpsMLNLPSELF-PLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:MTH00010 244 F----TSFIPSIFIsDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSF 292
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 13-301 2.10e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 202.44  E-value: 2.10e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  13 MALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLLALT 92
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  93 IWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYTMST 172
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 173 laisqeplYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLLFLN 252
Cdd:MTH00090 161 --------SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 470226966 253 PSMLNLpselfplilatkaLLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:MTH00090 233 FSFLML-------------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKF 268
ndhA CHL00032
NADH dehydrogenase subunit 1
 15-299 1.09e-52

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 177.07  E-value: 1.09e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  15 LAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLA---LLLAL 91
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisILLSY 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  92 TIwIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGnyTMS 171
Cdd:CHL00032 114 LV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SLS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 172 TLAISQEPLYLMLSSWPL------TMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTL 245
Cdd:CHL00032 191 TVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLF 270

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 470226966 246 TTLLFLNPSMLNLPSELFPLILATKALL------------LSSSFLWV------RASYPRFRYDQLMHLLWK 299
Cdd:CHL00032 271 VTVLYLGGWNLSIPYIFIPELFEINKTGgvfgttigifitLAKTYLFLfisittRWTLPRLRMDQLLNLGWK 342
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 10-299 2.99e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 166.25  E-value: 2.99e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  10 YLIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPNIIGPFGLLQPMADGIKLFIKEPIRPATSSPLLFTTTPMLALLL 89
Cdd:MTH00058   3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  90 ALTIWIPLPLPFPLTDLNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLSGNYt 169
Cdd:MTH00058  83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSY- 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 170 mSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLMNTLTTLL 249
Cdd:MTH00058 162 -SLVDFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 470226966 250 FLNPSmlnlpselFPLILATKALLLsssFLWVRASYPRFRYDQLMHLLWK 299
Cdd:MTH00058 241 FFGGG--------FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWE 279
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
11-301 2.52e-33

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 124.53  E-value: 2.52e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  11 LIMALAYMIPILIAVAFLTLVERKILSYMQSRKGPniigpfGLLQPMADGIKLFIKEPIRPATSSPLlFTTTPMLAL--- 87
Cdd:COG0650    4 ILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVALaam 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966  88 --LLALTIWIPLPLPFPLTDLNLGLLFILAMSSLAvysILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSTVMLS 165
Cdd:COG0650   77 llAALLVPVLTTGPPLSFSGDLIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 470226966 166 GN---YTMSTLAISQEPLYLMLSSWPLTMMWYISTLAETNRSPFDLTEGESELVSGFNVEYSAGPFALFFLAEYANIMLM 242
Cdd:COG0650  154 GStslSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 470226966 243 NTLTTLLFLnPSMLNLPSELFPLILATKALLLSSSFLWVRASYPRFRYDQLMHLLWKNF 301
Cdd:COG0650  234 LSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAF 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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