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Conserved domains on  [gi|469636236|gb|AGH67825|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Drymocichla incana]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-296 9.62e-160

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 448.50  E-value: 9.62e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRL 296
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-296 9.62e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 448.50  E-value: 9.62e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRL 296
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-296 2.49e-36

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 135.24  E-value: 2.49e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  14 ILGTAITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFITQATASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  92 PIS------------CLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKL----PPISLLFMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 153 LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM-TAIISYNPK-LTMLNFYL--YALMTTAVFLTLNTVKASKLP 228
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 469636236 229 ALMTT-----WTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:COG1007  351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-296 9.56e-29

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 114.27  E-value: 9.56e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   14 ILGTAITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   93 ISCLILT------------SALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPI--------SLLFMTSPSLNPT 152
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlflYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  153 LLTCmAILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLN--FYL--YALMTTAVFLTLNTVKASKLP 228
Cdd:TIGR01770 272 LAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 469636236  229 A------LMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:TIGR01770 351 WieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 9.83e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 108.55  E-value: 9.83e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   91 HPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPT------LLTCMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  165 GGWMGLNQTQIRKILAFSSISHLGWMTAIIS----YNPKLTMLNFYLYALMTTAVFL-----TLNTVKASKLPALMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 469636236  236 KAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLS 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-296 9.62e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 448.50  E-value: 9.62e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRL 296
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-296 6.78e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 390.70  E-value: 6.78e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSlNPTLLTCMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-296 1.74e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 376.95  E-value: 1.74e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRL 296
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-296 1.62e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 346.45  E-value: 1.62e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRL 296
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-296 3.19e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 284.94  E-value: 3.19e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRL 296
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-296 3.29e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 259.09  E-value: 3.29e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 TGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRI 296
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-296 3.77e-62

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 199.66  E-value: 3.77e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   1 MNPQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  81 tgqwdITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTspsLNPTLLTCMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPAL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRI 288
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-294 6.98e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 178.16  E-value: 6.98e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   5 AKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  85 DITqlthpiscLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTC-MAILSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 164 LGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTvKASKLPALMTTWTKAPALNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 469636236 244 LMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYL 294
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYL 286
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-296 8.61e-52

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 173.04  E-value: 8.61e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   7 LIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSmtnawyTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  87 TQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAILSAALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 167 WMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPALNAMLML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 469636236 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-296 3.40e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 142.50  E-value: 3.40e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   8 IFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAwytgqwdIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  88 QLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLfmTSPSLNPTLLTCMAILSAALGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 168 MGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALMTTAVFLTLNTVKASKLPALMTTWTKAPALNAMLMLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 469636236 248 LLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSL 281
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-296 2.49e-36

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 135.24  E-value: 2.49e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  14 ILGTAITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFITQATASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  92 PIS------------CLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKL----PPISLLFMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 153 LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM-TAIISYNPK-LTMLNFYL--YALMTTAVFLTLNTVKASKLP 228
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 469636236 229 ALMTT-----WTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:COG1007  351 AEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 8.21e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 121.29  E-value: 8.21e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  13 LILGTAITISSNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFITQATASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  79 WYTGQWDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNptLLTCMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 159 ILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNP----KLTMLNFYLYALMTTAVF---LTLNTVKaSKLPALM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYK-NLIIEFS 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 469636236 232 TTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.13e-30

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 119.93  E-value: 1.13e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  14 ILGTAITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  93 IS------------CLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKL----PPISLLFMTSPSLNPT---L 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 154 LTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM---TAIISYNPKLTMLnFYL--YALMTTAVFLTLNTVK----- 223
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYLlaYLFMTLGAFGVISLLRrkgge 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 469636236 224 ASKLPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:PRK05777 352 AESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-296 9.96e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 117.04  E-value: 9.96e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   8 IFIASLILGTAITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  87 ----TQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTcmAILSA 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 163 ALGGWMGLNQTQIRKILAFSSISHLG---WMTAIISYNP-KLTMLNFYLYALMTTAVFLTLNTVKASK--LPALMTTWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 237 APALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-296 9.56e-29

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 114.27  E-value: 9.56e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   14 ILGTAITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   93 ISCLILT------------SALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPI--------SLLFMTSPSLNPT 152
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFavflrlflYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  153 LLTCmAILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLN--FYL--YALMTTAVFLTLNTVKASKLP 228
Cdd:TIGR01770 272 LAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 469636236  229 A------LMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:TIGR01770 351 WieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 9.83e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 108.55  E-value: 9.83e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   91 HPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPT------LLTCMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  165 GGWMGLNQTQIRKILAFSSISHLGWMTAIIS----YNPKLTMLNFYLYALMTTAVFL-----TLNTVKASKLPALMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 469636236  236 KAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLS 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-296 2.54e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 92.90  E-value: 2.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   9 FIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQ 88
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  89 LTHPIS----------CLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNP------- 151
Cdd:COG0651  192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalfl 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 152 -TLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLY----ALMTTAVFLT-------L 219
Cdd:COG0651  272 gTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaieraT 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 469636236 220 NTVKASKLPALmttWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:COG0651  352 GTRDLDKLGGL---GKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 3.38e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 84.53  E-value: 3.38e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   3 PQAKLIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFITQATASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  74 SMTNAWYTGQ--------------WDITQLTHPISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLppI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 140 SLLFMTSPSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYALM----TTAV 215
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALAS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 469636236 216 FLTLNTVK---------------------ASKLPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLEefgtrtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-296 3.82e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 75.43  E-value: 3.82e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   7 LIFIASLILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHP-RAIEAATKYFITQATASALVL--FSsmtnaWYTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  84 -------WDI------TQLTHPISCLI----LTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISL----- 141
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatrif 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 142 --LFMTSPSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGW-MTAIISYNPK------LTMLNFYLyalmt 212
Cdd:CHL00049 269 diPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNdgyasmITYMLFYI----- 343

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 213 tavFLTLNTVKASKLPALMT----------TWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQD---LSPIA 279
Cdd:CHL00049 344 ---FMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGlyfLVSIG 420

                        330
                 ....*....|....*..
gi 469636236 280 MSISVLSllgLFFYLRL 296
Cdd:CHL00049 421 LLTSVIS---IYYYLKI 434
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-287 2.46e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 67.04  E-value: 2.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  33 LEINTLAILPLIS-KSHHPRAIEAATKYFITQATASALVLFS---------SMTNAWYTGQWDIT-QLTHPISCLILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENpTVVAKIALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 102 LAMKLGLVPFHFWFPEVLQG--SQLTTGLLLSTVMKLPPISLLFMT--SPSLNPT----LLTCMAILSAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 174 QIRKILAFSSISHLGWM-----TAIISY-NPKLTMLNF----------YLYALMTTAVFLT-------LNTVKASKLPAL 230
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgVGLAALgDPAMASYGEialaggiyhiVNHALYKALLFLTagaviyeTGTRNLNELGGL 389

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 469636236 231 MTTwtkAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQE--LTKQDLSPIAMSISVLSL 287
Cdd:PRK08376 390 ART---MPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESsaLFNPILGVIAMIGSVLTL 445
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 3.96e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 66.49  E-value: 3.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  96 LILTSALAmKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLL------FMTSPSLNPTLLTcMAILSAALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 170 LNQTQIRKILAFSSISHLGWMTAIISYNPK------LTMLnfYLYALMTTAVFLTLNTVKAS-------KLPALmttWTK 236
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDHStgtrdirKLSGL---GRR 360

                        170       180
                 ....*....|....*....|....*..
gi 469636236 237 APALNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-267 8.66e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.10  E-value: 8.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  49 HPRAIEAATKYFITQATASALVLFSSMTNAWYTGQW--DITQLT-HPIS-------CLILTSALAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 119 LQGSQLTTGLLLSTVMK--------------LPPISLLFMtspslnPTLLTcMAILSAALGGWMGLNQTQIRKILAFSSI 184
Cdd:COG1008  236 HVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYFA------PLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSV 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 185 SHLGWMT-AIISYNPK------LTMLNFylyALMTTAVFLTLNTVKA----SKLPALMTTWTKAPALNAMLMLTLLSLAG 253
Cdd:COG1008  309 SHMGFVLlGIFALNPLglqgavLQMVSH---GLITAALFLLVGVLYDrthtRDIADLGGLAKRMPVLAALFLLAALASLG 385

                        250
                 ....*....|....
gi 469636236 254 LPPLTGFLPKWLII 267
Cdd:COG1008  386 LPGTSGFVGEFLVL 399
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.08e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.07  E-value: 1.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  50 PRAIEAATKYFITQATASALVLF-SSMTNAWYTGQwdiTQLTH-------------PISCLILTSALAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAialalitspslglALALVFVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 116 PEVLQGSQLTTGLLLSTVMKLP----PISLLFMTSPSLNP---TLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 189 WMTA--IISYNPKLTMLNFYL--YALMTTAVF-------LTLNTVKASKLPALmttWTKAPALNAMLMLTLLSLAGLPPL 257
Cdd:PRK02504 314 FVMIglVAGTEAGYASMVFYLlaYLFMNLGAFacvilfsLRTGTDQISDYAGL---YQKDPLLTLGLSLCLLSLGGIPPL 390


                 ....*.
gi 469636236 258 TGFLPK 263
Cdd:PRK02504 391 AGFFGK 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-293 2.57e-11

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 64.02  E-value: 2.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  23 SNHWIMAWAGLEINTLAILPLISKSHH-PRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQLTH---------- 91
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  92 --PISCLILTSALAmKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSP--SLNPTLLTCMAILSAA---L 164
Cdd:COG1009  210 ltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIIGAItalF 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 165 GGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFylyaLMTTAVF------------LTLNTVKASKLPALmt 232
Cdd:COG1009  289 AALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFH----LLTHAFFkallflgagsviHATGTRDIRKMGGL-- 362

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 469636236 233 tWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQE-LTKQDLSPIAMSISVLSLLGLFFY 293
Cdd:COG1009  363 -RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALLGAFLTAFY 423
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-296 2.00e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 61.05  E-value: 2.00e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  33 LEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQL--------THPISCLILTSALAM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpTVVTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 105 KLGLVPFHFWFPEVLQG-SQLTTGLLLSTVMKLPPISLL----------FMTSPSLNpTLLTCMAILSAALGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLG-WLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 174 QIRKILAFSSISHLGWMTAIISYNPKLTMLN--FYLYALMTT---------AVFLTLNTVKASKLPALMTtwtKAPALNA 242
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLLHHALMkgalflaagAIEVTYGTRRLSELSGLGR---RMPLTAA 370

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 469636236 243 MLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-291 3.88e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 60.40  E-value: 3.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  34 EINTLAILPLISKSHHpRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDIT-------QLTHPISCLI----LTSAL 102
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 103 AMKLGLVPFHFWFPE-----------VLQG--SQLTTGLLLSTVMKLPPISLL-----FMTSPSLNPTLLTCMAIlSAAL 164
Cdd:PRK08668 207 VAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFsefgtYRGVPLFNYILAWLGNI-SIIV 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 165 GGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLT----MLNFYLYALMTTAVFLTLNTV----KASKLPALMTTWTK 236
Cdd:PRK08668 286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 469636236 237 APALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSI---SVLSLLGLF 291
Cdd:PRK08668 366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAffgSIGSFLYVF 423
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 2.73e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.64  E-value: 2.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   50 PRAIEAATKYFITQATASALVLFSSMTNAWYTGQ-WDITQL-THPISC-------LILTSALAMKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  120 QGSQLTTGLLLSTVMKLPPISLLFMTSPsLNP-------TLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMT- 191
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLl 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  192 AIISYNPK------LTMLNfylYALMTTAVFLTLNTVKASKLPALMTT----WTKAPALNAMLMLTLLSLAGLPPLTGFL 261
Cdd:TIGR01972 311 GIFSFNELgisgavFQMIS---HGLITAALFLLVGVLYERAHTRDIAKygglANKMPVLAAFFMLFAMASLGLPGTSGFV 387


                  ....*..
gi 469636236  262 PKWLIIQ 268
Cdd:TIGR01972 388 GEFLILL 394
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-289 3.99e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 54.15  E-value: 3.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  92 PISCLILTSALAmKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPT-----LLTCMAILSAALGG 166
Cdd:PRK12647 196 AILLLVLGGAFT-KSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 167 WMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLY----ALMTTAVFLTLNTVK-------ASKLPALmttWT 235
Cdd:PRK12647 275 LLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RR 351

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 469636236 236 KAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTkqDLSPIAMSISVLSLLG 289
Cdd:PRK12647 352 AMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK12650 PRK12650
DUF4040 family protein;
87-263 4.29e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 54.28  E-value: 4.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  87 TQLTHPISCLILTSALAmKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSL--NPT---LLTCMAILS 161
Cdd:PRK12650 204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMIT 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 162 AALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTM----LNFYLYALMTTAVFLTLNTVK----ASKLPALMTT 233
Cdd:PRK12650 283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALtaavVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSL 362

                        170       180       190
                 ....*....|....*....|....*....|
gi 469636236 234 WTKAPALNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-292 8.93e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 53.01  E-value: 8.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   8 IFIASLILgtaiTISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSS----------MTN 77
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  78 AWYTGQW-DITQLTHPISCLILTSALAM-------KLGLVPFHFWFPE-----------VLQGSQLTTGLLLSTVMKlpp 138
Cdd:PRK06458 192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYY--- 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 139 ISLLFMTSPSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMT-------AIISYNPKLTMLNfylYALM 211
Cdd:PRK06458 269 ILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAfalgiggPLGIFAALLHMLN---HSLT 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 212 TTAVFLTLNTVKASK----LPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQdlSPIAMSISVLSL 287
Cdd:PRK06458 346 KSAIFFASGNVLQKYgtrdINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLAR--GPLLIAILLLLL 423


                 ....*
gi 469636236 288 LGLFF 292
Cdd:PRK06458 424 LTLAF 428
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 1.48e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 52.26  E-value: 1.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  96 LILTSALAMKLGLVPFhFWFPEVLQGSQLTTGLLLSTVMKLPPI-------SLLFMTSPSLNPTLLTCMAILSAALGGWM 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 169 GLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYAL----MTTAVFLTLNTVKA----SKLPALMTTWTKAPAL 240
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVhdmvVKTALFLIAGSLVRltgyRSLQYLGGLYRKEPLF 369

                        170       180
                 ....*....|....*....|....*...
gi 469636236 241 NAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 2.78e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 51.50  E-value: 2.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  92 PISCLILTSAL--AMKLGLvpfHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAI-----LSAAL 164
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFF 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 165 GGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYL--YALMTTAVFLTLNTVKAS---------KLPALMTT 233
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSVIHSttvdeqdmrKMGGLIHS 382

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 469636236 234 wtkAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 3.84e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.89  E-value: 3.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  33 LEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFS-----SMTNAWYTGqwDITQLTHP--------ISCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 100 SALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISL------------LFMTSPSLNpTLLTCMAILSAALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 168 MGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLY----ALMTTAVFLTLNTVK----ASKLPALMTTWTKAPA 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 469636236 240 LNAMLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 4.94e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 50.80  E-value: 4.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  34 EINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQ-----LTHPISCLILTSALAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 109 V------PFHFWFPEVLQGSQLTTGLLLSTVMKLPPISL------LFMTSPSLNP--TLLTCMAILSAALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSaqGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 175 IRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYA----LMTTAVFLTLNTV----KASKLPALMTTWTKAPALNAMLML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 469636236 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 5.37e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 50.72  E-value: 5.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  33 LEINTLAILPLISKSHHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQLTH--PISCLILTSALAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 111 FHFWFPEVLQGSQLTTGLLLSTVM---KLPPISLLFMTSPSLNPtLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 188 GWMTAiisyNPKLTMLNFYLYALMTTAVFLTlntvkASKLPALMTTWTKAPALNA----MLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK07234 282 GFILA----APLVGGLYALAHGLVKSTLFLC-----AGALPSRNFTELISQMLGIgkwiPLTMASFSIAGFPLLAGFVSK 352


                 ....*...
gi 469636236 264 WLIIQELT 271
Cdd:PRK07234 353 VLTLKNLL 360
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-296 4.25e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 47.76  E-value: 4.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  95 CLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPTLLTCMAI-----LSAALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 170 LNQTQIRKILAFSSISHLGWMTAIISynpkLTMLNFYLYALMTTAVFLTLNTVKAS-------------KLPALMTTwtk 236
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACG----LSHYSISLFHLMNHAFFKALLFLSAGsvihalsdeqdmrKMGGLISF--- 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 469636236 237 APALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLS-LLGLFFYLRL 296
Cdd:MTH00020 366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRL 426
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 14-270 4.93e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 47.86  E-value: 4.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  14 ILGTAITISSNHWIMAWAGLEINTLA---ILPLISKSHHPRAIEAATKYFITqatasALVLFSSMTNAWYTGQWDITQLT 90
Cdd:PRK06459  82 ILGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGELST-----VLILAGFAWAFIISGTTNFSYLP 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  91 HPISCLILTSALAMKLGLVPFHF--WFPEVLQGSQLTTGLLLSTVMKLPPI----SLLFMTSPS-LNPTLLTCMAI--LS 161
Cdd:PRK06459 157 SPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVygilKMTILTQTIpIGYFGLTILAIgaFS 236

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 162 AALGGWMGLNQTQIRKILAFSSISHLGWMTA-----IISYNPKLTMLNFYLYALMT---------TAVFLTLNTVKASKL 227
Cdd:PRK06459 237 ILFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQEKQSI 316

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 469636236 228 PALMTTWTKAPALNAMLMLtlLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 317 TYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESL 357
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 6.58e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 47.40  E-value: 6.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  55 AATKYFITQATASALVLFSSMTNAWYTGQ----------WDITQLTHPISCLILTSALAMKLGLVPFHFWFPEV-LQGSQ 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGStsfdydaistQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 124 LTTGLLLSTVMKLPPISL------LFMTSPSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGW-------- 189
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaag 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 190 --------MTAIISYNPKLTMLnFYLYALMTTAVfltlNTVKASKLPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFL 261
Cdd:PRK07363 318 tqlsllgaVAQMISHGLILALL-FHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                 ....*..
gi 469636236 262 PKWLIIQ 268
Cdd:PRK07363 393 AEFIVFQ 399
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 8.52e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.00  E-value: 8.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  55 AATKYFITQATASALVLFSSMTNAWYTG--QWDITQL---THPISCLILTSA-----LAMKLGLVPFHFWFPEV-LQGSQ 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 124 LTTGLLLSTVMKLPPISLL------FMTSPSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 198 PKLTMLNFYL----YALMTTAVFLTLNTV-------KASKLPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 318 TPLSILAAVFqmisHGLISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK12646 PRK12646
DUF4040 family protein;
92-272 1.08e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 46.67  E-value: 1.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  92 PISCLILTSALAmKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPT-----LLTCMAILSAALGG 166
Cdd:PRK12646 211 PMIFMFLLGAFT-KSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGS 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 167 WMGLNQTQIRKILAFSSISHLGWMTAII------SYNPKLTMLNFY-------LYALMTTAVFLT--------LNTVKAS 225
Cdd:PRK12646 290 ITALKQWDLKGILAYSTISQLGMIMAMVgigggyAQHQQDAIASIYvfvlfaaLFHLMNHAIFKCalfmgvgiIDHEAGT 369

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 469636236 226 KLPALMTTWTKA-PALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646 370 RDIRILSGMRQLfPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-296 1.31e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 46.10  E-value: 1.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 103 AMKLGLVPFHFWFPEVLQG-----SQLTTGLL----LSTVMKLppISLLFMTSPSLNPTLLTCMAILSAALGGWMGLNQT 173
Cdd:PRK07691 220 ATKAGLFPLYFWLPGSYYAppiaiAALFGALLtkvgVYAIART--FTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYF 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 174 QIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYA----LMTTAVFLTLNTVKA-------SKLPALMTTWtkaPALNA 242
Cdd:PRK07691 298 DIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLihdmIVKAALFLLIGIMIKitgttdlKKMGGLIKRY---PVLGW 374

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 469636236 243 MLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPIAMSISVLSLLGLFFYLRL 296
Cdd:PRK07691 375 MFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.45e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 46.36  E-value: 1.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  48 HHPRAIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQLTHP--------------ISCLILTSALAMKLGLVPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDselienikghplflITLILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 114 WFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNPT-----LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 189 WMTAIISYNPK------LTMLNFYL--YALMTTAVFLTLNTV----KASKLPALMTTWTKAPALNAMLMLTLLSLAGLPP 256
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGIVaheaATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                 ....*..
gi 469636236 257 LTGFLPK 263
Cdd:PRK12649 396 LNGFLSK 402
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-290 1.88e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.88  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  55 AATKYFITQATASALVLFSSMTNAWYTGQWDITQLTHP-----ISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 130 LSTVM-KLPPISLLFMTSPSLNPTLLTCMAIL-----SAALGGWMGLNQTQIRKILAFSSISHLG--------WMTAIIS 195
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 196 YNPKLTMLNF-------YLYALMTTAVFLTLNTVKAS----KLPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667 323 GLDTLALLALggalfhsLNHALFKSLLFLTAGSVVHAtgtrNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402

                        250       260       270
                 ....*....|....*....|....*....|
gi 469636236 265 LI----IQELTKQDLSPIAMSISVLSLLGL 290
Cdd:PRK08667 403 LLyesfFQSFSVADPLIKILLFSVLAIFAL 432
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-278 2.28e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 45.59  E-value: 2.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 107 GLVPFHFWFPEVLQGSQLTTGLLLSTV-MKLPPISLLFMTSPSLNPTL-----LTCMAILSAALGGWMGLNQTQIRKILA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 181 FSSISHLG--------WMTAIISYNPKLTMLNFY--LYALMTTAVFLTLNTVKASK---------LPALMTTWTKAPALN 241
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVLFLGAGSvwfrtghrdIEKLGGIGKKMPVIS 354

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 469636236 242 AMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDLSPI 278
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGA 391
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 4.36e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 44.57  E-value: 4.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  96 LILTSALAMKLGLVPFHFWFPE-----------VLQGsqlttglLLSTVMKLPPI---SLLFmTSPSLNpTLLTCMAILS 161
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAG-------LLTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLT 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 162 AALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLNFYLYA----LMTTAVFLTLNTVK----ASKLPALMTT 233
Cdd:PRK12665 284 MVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGLIErqagSSSLRRLGGL 363

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 469636236 234 WTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 364 AKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-267 8.87e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.65  E-value: 8.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  50 PRAIEAATKYFITQATASALVLFSSMTNAWY----TGQWDITQL-THPISC-------LILTSALAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 118 VLQ-----GSQLTTGLLLSTV------MKLPpislLFMTSPSLNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrFSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 187 LGWMT-AIISYNPK------LTMLNfylYALMTTAVFLTLNTV----KASKLPALMTTWTKAPALNAMLMLTLLSLAGLP 255
Cdd:PRK05846 313 MGFVTlGIFAGNQLgiqgaiFQMIS---HGLSSAALFLLVGVLydrlHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLP 389

                        250
                 ....*....|..
gi 469636236 256 PLTGFLPKWLII 267
Cdd:PRK05846 390 GTSGFVGEFLIL 401
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 4.34e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.55  E-value: 4.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  52 AIEAATKYFITQATASALVLFSSMTNAWYTGQWDITQLTHPISCLILTSALAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 116 PEVLQGSQLTTGLLLSTVMKLPPISLLFMTSP--SLNPTLLTCMAI---LSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-190 5.44e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.28  E-value: 5.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  13 LILGTAITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFITQATA------SALVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  87 TQLTHP----------ISCLILTSALAMKLGLVPFHFWFPEV-LQGSQLTTGLLLSTVMKLPPISLLFMTS-------PS 148
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 469636236 149 LNPTLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 6.03e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 41.29  E-value: 6.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  82 GQWDITQLTH----PISCLILTSALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLL-----FMTSPSLNPT 152
Cdd:MTH00207 165 GHWSITNMWQtdmnNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 153 LLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYN-PKLTMLNFYLYALMTTAVFLTLNTV-----KASK 226
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 469636236 227 LPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 33-267 6.18e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.11  E-value: 6.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  33 LEINTLAILPLISKSHHPRAIEAATKYFITQATAS------ALVLFSSMTNAWYTGQWDITQLTHPISCLILTSALAMKL 106
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 107 GLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSPSLNP------TLLTCMAILSAALGGWMGLNQTQIRKILA 180
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 181 FSSISHLGWMTAIISYNP-------KLTMLNFYLYALMTTAVFLTLNTVKAS----KLPALMTTWTKAPALNAMLMLTLL 249
Cdd:PRK06525 302 YSTITQLGYMFFGLSLAIlgsrlalEGSIAYIFNHAFAKSLFFLVAGALSYScgtrLLPRLRGVLKKLPLVGVGFCVAAL 381

                        250
                 ....*....|....*...
gi 469636236 250 SLAGLPPLTGFLPKWLII 267
Cdd:PRK06525 382 AITGVPPFNGFFSKFPIF 399
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 105-271 6.56e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 41.15  E-value: 6.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 105 KLGLvpfHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFMTSP-----SLNPTLLTCMAILSAALGGWMGLNQTQIRKIL 179
Cdd:MTH00210 227 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPlfegsPLALTIVTILGALTAFFAATVGVVQNDLKKVI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 180 AFSSISHLGWMTAIISynpkLTMLNFYLYALMTTAVFLTLNTVKA-SKLPAL--------MTTWTKA-PALNAMLMLTLL 249
Cdd:MTH00210 304 AYSTCSQLGYMVMVCG----ISNYSTSLFHLMNHAFFKALLFLSAgSVIHAVsdeqdmrkMGGLIKSiPFTYVMILIGSL 379

                        170       180
                 ....*....|....*....|..
gi 469636236 250 SLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00210 380 SLMGFPYLTGFYSKDLIL-ELT 400
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 171-263 1.95e-03

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 39.52  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 171 NQTQIRKILAFSSISHLGWMTAI-----ISYNPKLTMLNFYLYALmTTAVFLTLN--TVKAS------------------ 225
Cdd:PRK12645 294 KQTDLKGILAFSTVSQLGLIMSLlgigaASLHYQGDDSKIYAAAI-TAAIFHLINhaTFKGSlfmivgivdhetgtrdir 372

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 469636236 226 KLPALMT----TWTKApalnamlMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12645 373 KLGGLMTimpiTFTIA-------LIGALSMAGLPPFNGFLSK 407
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 164-263 2.30e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 39.40  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 164 LGGWMGLNQTQIRKILAFSSISHLGWMTAIISYNPKLTMLnfylyalmtTAVFLTLN--TVKAS---------------- 225
Cdd:PRK12648 284 LGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLAAV---------AAIFHIINhaTFKASlfmaagiidhetgtrd 354

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 469636236 226 --KLPALmttWTKAPALNAMLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12648 355 mrRLSGL---RRLMPITATLAMVAAAAMAGVPLLNGFLSK 391
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-188 2.64e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.24  E-value: 2.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  55 AATKYFITQATASALVLFSSMTNAWYTGQ--WDITQLTH---PISCLILTS-----ALAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 469636236 118 ----VLQGSQLTTG---LLLSTVMKLPPISLLFmtSPslnptLLTCMAILSAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK12561 218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYF--AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-197 4.58e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.35  E-value: 4.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  75 MTNAW---YTGQWDITQL-------THPISCLILtsALAMKLGLVPFHFWFPEVLQGSQLTTGLLLSTVMKLPPISLLFM 144
Cdd:MTH00066 182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIR 259

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 469636236 145 TSPSL--NPTLLT---CMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMTAIISYN 197
Cdd:MTH00066 260 FHPLLenNQTALTiclCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLN 317
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-275 4.59e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.26  E-value: 4.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236   2 NPQAKLIFIASLILGTAITISSNHWIMaWAGLEINTLAILPLISKSHHPRAIEAATKYFITqATASALVLF--------S 73
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpaviliyT 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236  74 SMTNAWYTGQWDITQLTHPISCLILTSALAmKLGLVPFHFWFPEVLQGSQLTTGLLLSTVM----KLPPISLLFMTSPSL 149
Cdd:PRK06589 193 KTGNLDFVSGGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLS 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 469636236 150 NPTLLTCM-------AILSAALGGWMGLNQTQIRKILAFSSISHLGW--MTAIISYNPKLTMLNFYL--YALMTTAVFLT 218
Cdd:PRK06589 272 YLQRIFAEfnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYS 351

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 469636236 219 LNTV----KASKLPALMTTWTKAPALNAMLMLTLLSLAGLPPLTGFLPKWLIIQELTKQDL 275
Cdd:PRK06589 352 MGSIyslkKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQ 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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