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Conserved domains on  [gi|461489782|gb|AGH18296|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Anthreptes malacensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.75e-163

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.67  E-value: 2.75e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489782 321 TNPMIAILTTLSLTLLPVAPMIYAIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.75e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.67  E-value: 2.75e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489782 321 TNPMIAILTTLSLTLLPVAPMIYAIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.38e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 7.38e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM-KLPPL-----TLLYMTSQSLNPTVLTIMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILA----YDPKLTLLNFYLYSLMTTAVFL-----TLNTTKVLNLPALMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 461489782  236 KIPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-270 3.26e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 3.26e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  14 ILGTTITVTSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPLTLLYMTSQSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 153 VLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILAYDPKLTLLNFYL--YSLMTTAVFLTL-----NTTK 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 461489782 224 VLNLPALMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQEL 270
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 8.01e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 8.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   14 ILGTTITVTSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   93 TSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PLTLLYMTSQSLNPTVLTIM 157
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  158 ----AILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSLMTTAVFLTLNTTKVLNLP- 228
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 461489782  229 ----ALMTAWTKI-PSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.75e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 459.67  E-value: 2.75e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489782 321 TNPMIAILTTLSLTLLPVAPMIYAIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.75e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 373.87  E-value: 1.75e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489782 321 TNPMIAILTTLSLTLLPVAPMIYAIF 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.23e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 368.36  E-value: 2.23e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSlNPTVLTIMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQW--HTN 318
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPST 319

                        330       340
                 ....*....|....*....|....*...
gi 461489782 319 KPTNPmIAILTTLSLTLLPVAPMIYAIF 346
Cdd:MTH00135 320 QLTLP-LAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 2.30e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 325.26  E-value: 2.30e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIALLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....
gi 461489782 319 KPTNPMIAILTTLSLTLLPVAPMI 342
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPML 343
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.66e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 287.25  E-value: 1.66e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 461489782 321 TNPMIAILTTLSLTLLPVAPMIYAIF 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-267 9.50e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.15  E-value: 9.50e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260
                 ....*....|....*....|....*..
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLII 267
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-275 1.81e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 184.26  E-value: 1.81e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   1 MNPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  81 tgqwdITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTsqsLNPTVLTIMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDM 275
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNM 267
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 1.35e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.82  E-value: 1.35e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   5 AKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  85 DITqlthptscLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNP-TVLTIMAILSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 164 LGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLpALMTAWTKIPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLS 235

                        250       260       270
                 ....*....|....*....|....*....|..
gi 461489782 244 LLLTLLSLAGLPPLTGFTPKWLIIQELTKQDM 275
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 5.50e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.86  E-value: 5.50e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   7 LVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  87 TQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPTVLTIMAILSAALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 167 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPALMTAWTKIPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 461489782 247 TLLSLAGLPPLTGFTPKWLIIQELTKQDM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 1.09e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.11  E-value: 1.09e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   8 VFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  88 qLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLymTSQSLNPTVLTIMAILSAALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 168 MGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVLNLPAlMTAWTKIPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260
                 ....*....|....*....|....
gi 461489782 248 LLSLAG-LPPLTGFTPKWLIIQEL 270
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.38e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 7.38e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM-KLPPL-----TLLYMTSQSLNPTVLTIMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLvKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILA----YDPKLTLLNFYLYSLMTTAVFL-----TLNTTKVLNLPALMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 461489782  236 KIPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 1.35e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.80  E-value: 1.35e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  13 LILGTTITVTSNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  79 WHTGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYmtSQSLNPTVLTIMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 159 ILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDP----KLTLLNFYLYSLMTTAVF---LTLNTTKVLnLPALM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 461489782 232 TAWTKIPSLNAMLLLTLLSLAGLPPLTGFTPKWLII 267
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-270 3.26e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 3.26e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  14 ILGTTITVTSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPLTLLYMTSQSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 153 VLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILAYDPKLTLLNFYL--YSLMTTAVFLTL-----NTTK 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 461489782 224 VLNLPALMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQEL 270
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 1.87e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.78  E-value: 1.87e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  13 LILGTTITVTSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDI----T 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  88 QLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNptVLTIMAILSAALGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 168 MGLNQTQIRKIMAFSSISHLGWMAIILAYDP----KLTLLNFYLYSLMTTAVF---LTLNTTKVLnLPALMTAWTKIPSL 240
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVI 342

                        250       260
                 ....*....|....*....|....*..
gi 461489782 241 NAMLLLTLLSLAGLPPLTGFTPKWLII 267
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-216 4.75e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.43  E-value: 4.75e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  14 ILGTTITVTSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVL--------------FSSMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  79 WHTGQWDITQLThpTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPLTLLYMTSQSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 461489782 153 -VLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTL--LNFYL--YSLMTTAVF 216
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAF 339
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 8.01e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 8.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   14 ILGTTITVTSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   93 TSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PLTLLYMTSQSLNPTVLTIM 157
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  158 ----AILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSLMTTAVFLTLNTTKVLNLP- 228
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 461489782  229 ----ALMTAWTKI-PSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-283 6.54e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 81.35  E-value: 6.54e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  13 LILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  92 ---------PTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM-KLPPLTLLYMTSQSLNP-------TVL 154
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILRVLTLLFGAdpalflgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 155 TIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLY----SLMTTAVFLT----LNTTKVLN 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 461489782 227 LPALMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTIA 283
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-192 1.32e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.90  E-value: 1.32e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  15 LGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASALVLFSSMTNAWHTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  84 --WDITQLTHPTS----------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLymTSQSLNP 151
Cdd:MTH00198 279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 461489782 152 TVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 1.16e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 71.57  E-value: 1.16e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   7 LVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASALVL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  82 GQWDI------TQLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNP 151
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFY 273

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 461489782 152 T-------VLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI-ILAYDPK------LTLLNFYLY 208
Cdd:CHL00049 274 FssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 1.54e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.07  E-value: 1.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWHTGQwdiTQL--------THPTSCLILT-----SAISMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 116 PEVLQGSPLTTGLLLSTIMK-------LPPLTLLYMTSQSLNPTVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKaagfalaIRLLVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 461489782 189 WMAI 192
Cdd:PRK02504 314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-195 5.33e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.56  E-value: 5.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW--DITQLTH-----PTSCLILTS---AISMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 119 LQGSPLTTGLLLSTIM-KLP-------PLTLLYMTSQSLNPTVLtIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                 ....*
gi 461489782 191 AIILA 195
Cdd:COG1008  315 LLGIF 319
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.28e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.42  E-value: 1.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 102 ISMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTIMKLPPL--TLLYMTSQSLNPT----VLTIMAILSAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 174 QIRKIMAFSSISHLGWMAI-----ILAY-DPKLT----------LLNFYLYSLMTTAVFLT----LNTTKVLNLPALMTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 461489782 234 WTKIPSLNAMLLLTLLSLAGLPPLTGFTPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 3.49e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.56  E-value: 3.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   50 PRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW----DITQLTHPTSC-----LILTSAISMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  121 GSPLTTGLLLSTIM-KLPP-------LTLLYMTSQSLNPtVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 3.23e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.92  E-value: 3.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782   2 NPQAKLVFTTSLILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  82 GQWDIT-------QLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLS-------------TIMKLP 137
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygfllVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 138 PLTLLY-MTSQSLNPTVLTIMAIL---SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTL-------LNFY 206
Cdd:PRK08668 255 GTKLFSeFGTYRGVPLFNYILAWLgniSIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNHA 334

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 461489782 207 LYS----LMTTAVFLTLNTTKVLNLPALmtAWtKIPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQELTKQDM 275
Cdd:PRK08668 335 LFKglffLIFAAVIYRTGTTKISEMGGL--IE-KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 21-194 5.34e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 51.31  E-value: 5.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  21 VTSNHWVMAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTH-------- 91
Cdd:COG1009  128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilss 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  92 ----PTSCLILTSAISmKLGLVPFHFWFPEVLQG----SPL-------TTGLLLstIMKLPPLTllymtsqSLNPTVLTI 156
Cdd:COG1009  208 plltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSPLF-------ALSPVWLTV 277

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 461489782 157 MAILSAA---LGGWMGLNQTQIRKIMAFSSISHLGWMAIIL 194
Cdd:COG1009  278 VAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 2.05e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.37  E-value: 2.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  13 LILGTTITVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  87 TQLTHPTSCL----ILTSAISM------KLGLVPFHFWFPEVLQGSP-LTTGLLLSTIMKLPPLTLLYMTS-------QS 148
Cdd:PRK08676 191 TELAAHASLLspsvLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 461489782 149 LNPTVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-195 1.02e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.23  E-value: 1.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  20 TVTSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSM---TNAWhtgqwdiTQLTHPTSCL 96
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA-------TVMGDGEMAI 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  97 ILTSAISM----------------------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYM----TSQSLN 150
Cdd:PRK06458 197 LWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyilIDAAIG 276

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 461489782 151 P----TVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILA 195
Cdd:PRK06458 277 SdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALG 325
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 1.81e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 46.24  E-value: 1.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  55 AATKYFLVQAAASALVLFSSMTNAWHTGQWD------ITQ-LTHPTSCLILTSAI---SMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 124 LTTGLLLSTIMKLPPLTLLYMTSQ------SLNPTVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYD 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQlfpqtwSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                 ....*.
gi 461489782 198 PKLTLL 203
Cdd:PRK07363 318 TQLSLL 323
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 2.31e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.85  E-value: 2.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  55 AATKYFLVQAAASALVLFSSMTNAWHTG-------QWDITQLTHPTSCLILTS---AISMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 124 LTTGLLLSTIMKLPPLTLL------YMTSQSLNPTVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYD 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 461489782 198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 5.40e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.91  E-value: 5.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 101 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPLTLLYMT-------SQSLNPTVLTiMAILSAALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSwpilplgAQNLAPAVIA-MGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|..
gi 461489782 173 TQIRKIMAFSSISHLGWMAIIL 194
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITL 339
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-197 7.01e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 44.64  E-value: 7.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  55 AATKYFLVQAAASALVLFSSMTNAWHTGQ--WDITQLTH---PTSCLILTS-----AISMKLGLVPFHFWFPEV-----L 119
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 120 QGSPLTTGLLLstimKLPPLTLLYMTSQSLNPT------VLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI- 192
Cdd:PRK12561 218 PVSMILAGVLL----KMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLg 293


                 ....*
gi 461489782 193 ILAYD 197
Cdd:PRK12561 294 IAAFT 298
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 8.08e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.42  E-value: 8.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  50 PRAIEAATKYFLVQAAASALVLFSSMTNAWH----TGQWDITQLTH---PTSCLILT-----SAISMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 118 VLQGSPLTTGLLLSTIM-KLPP-------LTLLYMTSQSLNPTVLTiMAILSAALGGWMGLNQTQIRKIMAFSSISHLGW 189
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAygllrfsLPLFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ...
gi 461489782 190 MAI 192
Cdd:PRK05846 316 VTL 318
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 8.95e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.17  E-value: 8.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  92 PTSCLILTSAISMKLGLVPFhFWFPEVLQGSPLTTGLLLSTIMK-------LPPLTLLYMTSQSLNPTVLTIMAILSAAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYLYSLMT--TAVFLTLNTTKVL----NLPALMTAWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 461489782 237 IPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 1.28e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.95  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  55 AATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHPT-----SCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 461489782 130 LSTIM-KLPPLTLLYMTSQSLNP-----TVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-195 1.37e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.40  E-value: 1.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSCLILTSAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 111 FHFWFPEVLQGSPLTTGLLLSTI-MKLPPLTLLYMTSQSLNP-TVLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVvVKAGVFPLVRCALDVPGLdLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282


                 ....*..
gi 461489782 189 WmaIILA 195
Cdd:PRK07234 283 F--ILAA 287
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 103-271 1.64e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 1.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 103 SMKLGLvpfHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMT-----SQSLNPTVLTIMAILSAALGGWMGLNQTQIRK 177
Cdd:MTH00032 239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKK 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 178 IMAFSSISHLGWMAIILAYDPKLTLLNFYLYSLMTTAVFLTLNTTKVL--------NLPALMTAWTKIPSLNAMLLLTLL 249
Cdd:MTH00032 316 VIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIhsttvdeqDMRKMGGLIHSIPFTYTMMLIGSF 395

                        170       180
                 ....*....|....*....|..
gi 461489782 250 SLAGLPPLTGFTPKWLIIqELT 271
Cdd:MTH00032 396 SIMGLPYLTGFYSKDLIL-ELT 416
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 2.21e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.71  E-value: 2.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  34 EINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSCLILTSAISMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 109 V------PFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMT-----SQSLNPTVLTIM---AILSAALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgGLSYFPSAQGVLialSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 175 IRKIMAFSSISHLGWMAIILAYDPKLTL-------LNFYLYslmTTAVFL----TLNTTKVLNLPALMTAWTKIPSLNAM 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFM 366

                        250       260
                 ....*....|....*....|....*
gi 461489782 244 LLLTLLSLAGLPPLTGFTPKWLIIQ 268
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 3.59e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.60  E-value: 3.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  96 LILTSAISmKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM---------KLPPLtllYMTSQSLNPTVLtIMAILSAALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVL-VLGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 167 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPK------LTLLnfYLYSLMTTAVFLTL----NTTKVLNLPALMTAWTK 236
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRR 360

                        170       180
                 ....*....|....*....|....*..
gi 461489782 237 IPSLNAMLLLTLLSLAGLPPLTGFTPK 263
Cdd:PRK12644 361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 4.04e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 4.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------TSCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 100 SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TIMKLPPLTL-----------LYMTSQSLNpTVLTIMAILSAALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 168 MGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLY----SLMTTAVFLT-------LNTTKVLNLPALmtaWTK 236
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKS 372

                        250       260       270
                 ....*....|....*....|....*....|.
gi 461489782 237 IPSLNAMLLLTLLSLAGLPPLTGFTPKWLII 267
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-216 1.43e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.39  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  52 AIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHPTSCLILTSAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 116 PEVLQGSPLTTGLLLSTIM---------KLPPLTllymtsqSLNPTVLTIMAI---LSAALGGWMGLNQTQIRKIMAFSS 183
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMvaagvflvaRMYPVF-------EQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYST 323

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 461489782 184 ISHLGWMAI---ILAYDPKltllnfyLYSLMTTAVF 216
Cdd:PRK07376 324 ISQLGYMVMamgCGAYSAG-------LFHLMTHAYF 352
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 1.60e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 40.25  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwHTGQWDITQL--------THPTSCLILTSAIS 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 104 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTIMKLP--PLTLLY--------MTSQSLNpTVLTIMAILSAALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 173 TQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSLMTTAVFLTLN----TTKVLNLPALMTAWTKIPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAF 372

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 461489782 245 LLTLLSLAGLPPLTGFTPKWLIIQELTKQDMAPAATTI 282
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-188 2.22e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 39.66  E-value: 2.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  53 IEAATKYFLVQAAASALVLFSSMTNAWHTGQWD-----ITQLTHPTSCLILTS---AISMKLGLVPFHFWFPEVLQGSPL 124
Cdd:MTH00204 162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVGfflSLAVKIPQIPFHIWLPQAHVEAPV 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 461489782 125 TTGLLLSTI-MKLPPLTLLYMT-------SQSLNPTVLTImAILSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:MTH00204 242 AGSVILAGIlLKLGGYGFLRFSwplfpaaSEYFAPLIVML-SVIAVIYGSLTTCRQVDFKRLIAYSSVAHMG 312
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 2.48e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.81  E-value: 2.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQLTHPTS---------------CLILTSAISmKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 113 FWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNPT-----VLTIMAILSAALGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                 ....*....
gi 461489782 188 GWMAIILAY 196
Cdd:PRK12649 315 AYLMTMYGY 323
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 4.59e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.92  E-value: 4.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  55 AATKYFLVQAAASALVLFSSMTNAWHTG--QWDITQLTH---PTSCLILTS-----AISMKLGLVPFHFWFPEVLQGSPL 124
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAAkdfGLGFQLLCYaglliAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 125 TTGLLLSTIM-KLPPLTLLYMTSQSLNPT---------VLTIMAILSAALGGWMglnQTQIRKIMAFSSISHLGWMAIIL 194
Cdd:PRK02546 246 PVHMLLAGILlKMGGYALLRMNAGMLPDAhaqfaplliVLGVVNIIYAALTSFA---QRNLKRKIAYSSISHMGFVLIGI 322


                 .
gi 461489782 195 A 195
Cdd:PRK02546 323 G 323
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 5.49e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.52  E-value: 5.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  95 CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQ--SLNPTVL---TIMAILSAALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALiivTIVGSLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 170 LNQTQIRKIMAFSSISHLGWMAIILAydpkltlLNFY---LYSLMTTAVF---LTLNTTKVLNlpAL--------MTAWT 235
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNHAFFkalLFLSAGSVIH--ALsdeqdmrkMGGLI 363

                        170       180       190
                 ....*....|....*....|....*....|....
gi 461489782 236 K-IPSLNAMLLLTLLSLAGLPPLTGFTPKWLIIQ 268
Cdd:MTH00020 364 SfLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK12650 PRK12650
DUF4040 family protein;
80-190 6.50e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.49  E-value: 6.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  80 HTGQW-DITQLTHPTSCLILTSAISmKLGLVPFHFWFPEVLQG-SPLTTGLLLSTIMKLPPLTLL-YMTSQSLNPT---V 153
Cdd:PRK12650 196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAVwnwL 274

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 461489782 154 LTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK12650 275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-190 7.77e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.14  E-value: 7.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  18 TITVTSNHWVM---AW--TGLEINTLailpLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQL--- 89
Cdd:PRK08168 114 HLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  90 --THPTS------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI--------MKLPPLTLLYMTSQSLnptv 153
Cdd:PRK08168 190 laAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggfvlIRFAPLLEQAPPARWL---- 265

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 461489782 154 LTIMAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 33-196 9.74e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 37.65  E-value: 9.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQL------THPTSCLILTSAISMKL 106
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALsglhgsLKYLVFLGILFAAWGKS 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489782 107 GLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPLTLLYMTSQSLNP------TVLTIMAILSAALGGWMGLNQTQIRKIMA 180
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                        170
                 ....*....|....*.
gi 461489782 181 FSSISHLGWMAIILAY 196
Cdd:PRK06525 302 YSTITQLGYMFFGLSL 317
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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