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Conserved domains on  [gi|459377106|gb|AGG58757|]
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cytochrome b, partial (mitochondrion) [Gallirallus sylvestris]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-215 1.89e-153

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 430.48  E-value: 1.89e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENK 376
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-215 1.89e-153

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 430.48  E-value: 1.89e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENK 376
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 2.61e-63

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 201.17  E-value: 2.61e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGMTLIHLTFLHETGSNNPLGI----TSNCDKIPFHPYYSLKDTLGFAFM 75
Cdd:COG1290  172 VTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVF 251

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  76 LIPLTALALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHKSKQR 153
Cdd:COG1290  252 LGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVR 329

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106 154 AMTFRPLSQLLFWTLVANLLILTWIGSQPVehPFILIGQMASLTYFTIILILFPAIGALE 213
Cdd:COG1290  330 SPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 47-194 5.63e-59

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 182.08  E-value: 5.63e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  47 NPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLTALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 126
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 459377106 127 KLGGVLALAASVLVLFLMPLLHKSKQRAmTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFILIGQMA 194
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
98-198 8.24e-50

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 157.26  E-value: 8.24e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   98 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPLSQLLFWTLVANLLILTW 177
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 459377106  178 IGSQPVEHPFILIGQMASLTY 198
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 79-170 1.06e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 1.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   79 LTALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFR 158
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125

                          90
                  ....*....|....*
gi 459377106  159 ---PLSQLLFWTLVA 170
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-215 1.89e-153

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 430.48  E-value: 1.89e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENK 376
CYTB MTH00131
cytochrome b; Provisional
 1-215 5.94e-140

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 395.95  E-value: 5.94e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENK 375
CYTB MTH00100
cytochrome b; Provisional
 1-215 2.13e-135

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 384.38  E-value: 2.13e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375
CYTB MTH00074
cytochrome b; Provisional
 1-215 5.54e-132

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 375.94  E-value: 5.54e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENK 376
CYTB MTH00191
cytochrome b; Provisional
 1-207 1.21e-125

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 359.23  E-value: 1.21e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00191 158 VQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLL 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00191 238 FLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPL 317

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFP 207
Cdd:MTH00191 318 TQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
 1-206 2.78e-119

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 342.92  E-value: 2.78e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00156 151 VQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLI 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00156 231 LLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPI 310

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILF 206
Cdd:MTH00156 311 NKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-215 2.81e-118

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 341.30  E-value: 2.81e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00034 161 VQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALS 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00034 241 SLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPL 320

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00034 321 SQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENK 375
CYTB MTH00145
cytochrome b; Provisional
 1-215 7.66e-117

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 337.26  E-value: 7.66e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILfPAIGALENK 215
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDN 375
CYTB MTH00016
cytochrome b; Validated
 1-205 2.96e-107

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 313.15  E-value: 2.96e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILIL 205
Cdd:MTH00016 322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00053
cytochrome b; Provisional
 1-215 5.58e-103

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 302.40  E-value: 5.58e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00053 162 VRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILS 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00053 242 IIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPL 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00053 322 SKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENK 376
CYTB MTH00022
cytochrome b; Validated
 1-215 5.03e-100

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 294.69  E-value: 5.03e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00022 160 VQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLS 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00022 240 FIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPL 319

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILFPAIGALENK 215
Cdd:MTH00022 320 GRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQ 374
CYTB MTH00224
cytochrome b; Provisional
 1-215 1.17e-90

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 271.02  E-value: 1.17e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00224 162 VEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLS 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPL 160
Cdd:MTH00224 242 LMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPL 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTiILILFPAIGALENK 215
Cdd:MTH00224 322 NQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDD 375
CYTB MTH00033
cytochrome b; Provisional
 1-214 7.53e-73

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 225.59  E-value: 7.53e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLT 80
Cdd:MTH00033 158 VEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFV 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFR 158
Cdd:MTH00033 238 IIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFN 317

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 459377106 159 PLSQLLFWTLVANLLILTWIGSQPV-EHPFILIGQMASLTYFTIILILFPAIGALEN 214
Cdd:MTH00033 318 PTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 2.61e-63

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 201.17  E-value: 2.61e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGMTLIHLTFLHETGSNNPLGI----TSNCDKIPFHPYYSLKDTLGFAFM 75
Cdd:COG1290  172 VTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVF 251

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  76 LIPLTALALFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHKSKQR 153
Cdd:COG1290  252 LGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVR 329

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106 154 AMTFRPLSQLLFWTLVANLLILTWIGSQPVehPFILIGQMASLTYFTIILILFPAIGALE 213
Cdd:COG1290  330 SPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-206 8.89e-60

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 191.31  E-value: 8.89e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIpLT 80
Cdd:MTH00086 150 VMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FI 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  81 ALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSkqrAMTFRPL 160
Cdd:MTH00086 229 IFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKL 305

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 459377106 161 SQLLFWTLVANLLILTWIGSQPVEHPFILIGQMASLTYFTIILILF 206
Cdd:MTH00086 306 NKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 47-194 5.63e-59

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 182.08  E-value: 5.63e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  47 NPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPLTALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 126
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 459377106 127 KLGGVLALAASVLVLFLMPLLHKSKQRAmTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFILIGQMA 194
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
98-198 8.24e-50

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 157.26  E-value: 8.24e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   98 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFRPLSQLLFWTLVANLLILTW 177
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 459377106  178 IGSQPVEHPFILIGQMASLTY 198
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
 6-206 1.10e-45

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 154.76  E-value: 1.10e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   6 GGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSNNPLGITSN-CDKIPFHPYYSLKDTLGFAFMLIPLTALAL 84
Cdd:MTH00046 157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLF 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  85 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASVLVLFLMPLLHKSKqramTFRPLSQLL 164
Cdd:MTH00046 237 VSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVN 311

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 459377106 165 FWTLVANLLILTWIGSQPVEHPFILIGQMASltyFTIILILF 206
Cdd:MTH00046 312 FWLIVSLFFSLSYLGGCHPEYPYLLISQLFS---VLMVLLLF 350
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-93 4.93e-18

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 77.67  E-value: 4.93e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106    1 VEWAWGGFSVDNPTLTRFFALHF-LLPFMIAGMTLIHLTFLHETGSNNPLGITSNCDKIPFHPYYSLKDTLGFAFMLIPL 79
Cdd:pfam13631  76 VWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALL 155

                          90
                  ....*....|....
gi 459377106   80 TALALFSPNLLGDP 93
Cdd:pfam13631 156 IGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-46 2.52e-17

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 76.64  E-value: 2.52e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETGSN 46
Cdd:cd00284  155 VEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-44 4.91e-13

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 64.71  E-value: 4.91e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 459377106    1 VEWAWGGFSVDNPTLTRFFALHFLLPFMIAGMTLIHLTFLHETG 44
Cdd:pfam00033 146 VEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 80-169 1.79e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.19  E-value: 1.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  80 TALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTF-R 158
Cdd:COG5679   53 IGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrR 127

                         90
                 ....*....|...
gi 459377106 159 PLSQ--LLFWTLV 169
Cdd:COG5679  128 PVATavFLFGTLV 140
petD CHL00058
cytochrome b6/f complex subunit IV
 79-170 2.82e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 59.63  E-value: 2.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106  79 LTALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHK-SKQRAMTF 157
Cdd:CHL00058  51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFR 125

                         90
                 ....*....|....*
gi 459377106 158 RPLSQL--LFWTLVA 170
Cdd:CHL00058 126 RPVATTvfLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 79-170 1.06e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 1.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377106   79 LTALALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHKSKQRAMTFR 158
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125

                          90
                  ....*....|....*
gi 459377106  159 ---PLSQLLFWTLVA 170
Cdd:TIGR01156 126 rpvATTVFLFGTVVA 140
PRK03735 PRK03735
cytochrome b6; Provisional
 6-49 3.77e-04

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 40.08  E-value: 3.77e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 459377106   6 GGFSVDNPTLTRFFALH-FLLPFMIAGMTLIHLTFLHETGSNNPL 49
Cdd:PRK03735 179 GGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-49 4.90e-04

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 39.70  E-value: 4.90e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 459377106   1 VEWAWGGFSVDNPTLTRFFALH-FLLPFMIAGMTLIHLTFLHETGSNNPL 49
Cdd:CHL00070 166 VELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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