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Conserved domains on  [gi|459377098|gb|AGG58753|]
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cytochrome b, partial (mitochondrion) [Rallina fasciata]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 589.56  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00119  94 CIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDN 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00119 174 PTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00119 254 PENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00119 334 LILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 589.56  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00119  94 CIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDN 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00119 174 PTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00119 254 PENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00119 334 LILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-281 1.32e-97

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 292.08  E-value: 1.32e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   2 IYLHIGRGLYYGSYlyKE----TWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFS 77
Cdd:COG1290  103 VYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEF 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  78 VDNPTLTRFFALH-FLLPFMIAGMTMIHLTFLHETGSNNPLGI----SSNCDKIPFHPYYSLKDILGFAFMLTSLTTLAL 152
Cdd:COG1290  181 PGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAF 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 153 FSPNllGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQ 230
Cdd:COG1290  261 FFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRT 338

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 459377098 231 LLFWTLVANLAILTWIGSQPVehPFILIGQMASTTYFTILLILFPIIGALE 281
Cdd:COG1290  339 ALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 115-262 4.09e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 182.85  E-value: 4.09e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 115 NPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIPN 194
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 459377098 195 KLGGVLALAASILVLFLSPLLHKSKQRSmTFRPLSQLLFWTLVANLAILTWIGSQPVEHPFILIGQMA 262
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
166-266 8.37e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.56  E-value: 8.37e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  166 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANLAILTW 245
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 459377098  246 IGSQPVEHPFILIGQMASTTY 266
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 144-238 2.75e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 2.75e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  144 LTSLTTLALFSPNLLGDPenftpANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSM 223
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|....*...
gi 459377098  224 TFR---PLSQLLFWTLVA 238
Cdd:TIGR01156 123 PFRrpvATTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 589.56  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00119  94 CIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDN 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00119 174 PTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00119 254 PENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00119 334 LILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 547.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00131  93 CIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDN 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00131 173 ATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGD 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00131 253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADV 332

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00131 333 LILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-285 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 528.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00100  93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00100 173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00100 253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKML 285
Cdd:MTH00100 333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-286 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 520.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00074  94 CIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDK 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00074 174 ATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00074 254 PDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANT 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00074 334 LILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-276 3.70e-178

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 495.59  E-value: 3.70e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00191  90 CIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDN 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00191 170 ATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGD 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00191 250 PENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANF 329

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPI 276
Cdd:MTH00191 330 ILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-274 2.74e-171

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 477.74  E-value: 2.74e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00156  83 CIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDN 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00156 163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00156 243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIV 322

                        250       260       270
                 ....*....|....*....|....*....|....
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILF 274
Cdd:MTH00156 323 ILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-285 1.02e-167

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 469.39  E-value: 1.02e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00145  94 CIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGN 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00145 174 ATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00145 254 PENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNF 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILfPIIGALENKML 285
Cdd:MTH00145 334 FILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-286 6.22e-165

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 462.64  E-value: 6.22e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00034  93 CLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDN 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00034 173 ATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALND 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00034 253 PENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATF 332

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00034 333 FILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-285 1.45e-155

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 438.73  E-value: 1.45e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00016  94 CLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDN 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00016 174 ATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00016 254 PENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNF 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLIlFPIIGALENKML 285
Cdd:MTH00016 334 LLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-286 1.10e-142

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 406.40  E-value: 1.10e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00053  94 CVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSN 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00053 174 ATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00053 254 AENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDF 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00053 334 FLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-286 1.31e-141

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 403.31  E-value: 1.31e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00022  92 CLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSN 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00022 172 ATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGD 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00022 252 PENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDF 331

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTILLILFPIIGALENKMLN 286
Cdd:MTH00022 332 ILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-286 5.78e-135

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 386.58  E-value: 5.78e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00224  94 FIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDN 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00224 174 ATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTD 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00224 254 PENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSW 333

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASTTYFTiLLILFPIIGALENKMLN 286
Cdd:MTH00224 334 AILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-282 5.41e-103

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 305.32  E-value: 5.41e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDN 80
Cdd:MTH00033  90 CVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSN 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  81 PTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFS--PNLL 158
Cdd:MTH00033 170 CTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLL 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 159 GDPENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVA 238
Cdd:MTH00033 250 QDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVG 329

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 459377098 239 NLAILTWIGSQPV-EHPFILIGQMASTTYFTILLILFPIIGALEN 282
Cdd:MTH00033 330 DFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-281 1.32e-97

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 292.08  E-value: 1.32e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   2 IYLHIGRGLYYGSYlyKE----TWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFS 77
Cdd:COG1290  103 VYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEF 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  78 VDNPTLTRFFALH-FLLPFMIAGMTMIHLTFLHETGSNNPLGI----SSNCDKIPFHPYYSLKDILGFAFMLTSLTTLAL 152
Cdd:COG1290  181 PGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAF 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 153 FSPNllGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQ 230
Cdd:COG1290  261 FFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRT 338

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 459377098 231 LLFWTLVANLAILTWIGSQPVehPFILIGQMASTTYFTILLILFPIIGALE 281
Cdd:COG1290  339 ALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 2-274 2.37e-90

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 272.20  E-value: 2.37e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   2 IYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 81
Cdd:MTH00086  83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  82 TLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTsLTTLALFSPNLLGDP 161
Cdd:MTH00086 163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDP 241

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 162 ENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSkqrSMTFRPLSQLLFWTLVANLA 241
Cdd:MTH00086 242 EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNV 318

                        250       260       270
                 ....*....|....*....|....*....|...
gi 459377098 242 ILTWIGSQPVEHPFILIGQMASTTYFTILLILF 274
Cdd:MTH00086 319 ILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 2-274 8.53e-75

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 232.57  E-value: 8.53e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   2 IYLHIGRGLYYGSYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNP 81
Cdd:MTH00046  85 LFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGV 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  82 TLTRFFALHFLLPFMIAGMTMIHLTFLHETGSNNPLGISSN-CDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGD 160
Cdd:MTH00046 165 TLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLD 244

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 161 PENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGvLALAASILVLFLSPllhkSKQRSMTFRPLSQLLFWTLVANL 240
Cdd:MTH00046 245 IEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLF 319

                        250       260       270
                 ....*....|....*....|....*....|....
gi 459377098 241 AILTWIGSQPVEHPFILIGQMASttyFTILLILF 274
Cdd:MTH00046 320 FSLSYLGGCHPEYPYLLISQLFS---VLMVLLLF 350
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 115-262 4.09e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 182.85  E-value: 4.09e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 115 NPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNLLGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIPN 194
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 459377098 195 KLGGVLALAASILVLFLSPLLHKSKQRSmTFRPLSQLLFWTLVANLAILTWIGSQPVEHPFILIGQMA 262
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-114 2.05e-53

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 172.55  E-value: 2.05e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   1 CIYLHIGRGLYYGSY--LYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSV 78
Cdd:cd00284   85 MLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSV 164

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 459377098  79 DNPTLTRFFALHFLLPFMIAGMTMIHLTFLHETGSN 114
Cdd:cd00284  165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
166-266 8.37e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.56  E-value: 8.37e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  166 PANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTFRPLSQLLFWTLVANLAILTW 245
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 459377098  246 IGSQPVEHPFILIGQMASTTY 266
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-112 5.16e-46

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 153.31  E-value: 5.16e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098    1 CIYLHIGRGLYYG--SYLYKETWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSV 78
Cdd:pfam00033  76 MLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSV 155

                          90       100       110
                  ....*....|....*....|....*....|....
gi 459377098   79 DNPTLTRFFALHFLLPFMIAGMTMIHLTFLHETG 112
Cdd:pfam00033 156 DQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-161 3.99e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.08  E-value: 3.99e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098    1 CIYLHIGRGLYYGSYLYKE--TWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSV 78
Cdd:pfam13631   6 AIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGPFP 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   79 DNPTLTRFFALHF-LLPFMIAGMTMIHLTFLHETGSNNPLGISSNCDKIPFHPYYSLKDILGFAFMLTSLTTLALFSPNL 157
Cdd:pfam13631  86 GTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIW 165


                  ....
gi 459377098  158 LGDP 161
Cdd:pfam13631 166 LGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 2-117 5.45e-18

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 80.53  E-value: 5.45e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098   2 IYLHIGRGLYYGSYLYKE--TWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVD 79
Cdd:PRK03735 105 MFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVG 184

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 459377098  80 NPTLTRFFALH-FLLPFMIAGMTMIHLTFLHETGSNNPL 117
Cdd:PRK03735 185 AQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 20-117 1.74e-16

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 76.30  E-value: 1.74e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  20 TWNTGIVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAVPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMIA 98
Cdd:CHL00070 117 TWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196

                         90
                 ....*....|....*....
gi 459377098  99 GMTMIHLTFLHETGSNNPL 117
Cdd:CHL00070 197 VFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 137-238 2.04e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.79  E-value: 2.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 137 ILGfafMLTSLTTLALFSPNLLGDPenftpANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLH 216
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90       100
                 ....*....|....*....|....*
gi 459377098 217 K-SKQRSMTFRPLSQL--LFWTLVA 238
Cdd:CHL00058 116 NvNKFQNPFRRPVATTvfLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 150-237 8.10e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.42  E-value: 8.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098 150 LALFSPNLLGDPenftpANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSMTF-RPL 228
Cdd:COG5679   55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPV 129

                         90
                 ....*....|.
gi 459377098 229 SQ--LLFWTLV 237
Cdd:COG5679  130 ATavFLFGTLV 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 144-238 2.75e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 2.75e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459377098  144 LTSLTTLALFSPNLLGDPenftpANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLSPLLHKSKQRSM 223
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|....*...
gi 459377098  224 TFR---PLSQLLFWTLVA 238
Cdd:TIGR01156 123 PFRrpvATTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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