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Conserved domains on  [gi|459112|gb|AAA16686|]
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cytochrome b, partial (mitochondrion) [Scytalopus spillmanni]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-95 3.42e-65

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 200.51  E-value: 3.42e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00119 114 WNTGVILLLLLMATA 128
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-95 3.42e-65

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 200.51  E-value: 3.42e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00119 114 WNTGVILLLLLMATA 128
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-95 7.21e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 127.87  E-value: 7.21e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112     1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSY--LFK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90
                ....*....|....*..
gi 459112    79 ETWNTGVILLLTLMATA 95
Cdd:cd00284 105 LTWVIGVILLLLTMATA 121
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-95 4.33e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 115.56  E-value: 4.33e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112       1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYG--SYLFK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90
                  ....*....|....*..
gi 459112      79 ETWNTGVILLLTLMATA 95
Cdd:pfam00033  96 LTWVIGVILLVLTMSTA 112
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-95 1.16e-31

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 113.73  E-value: 1.16e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112     1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYlfKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90
                ....*....|....*....
gi 459112    80 ---TWNTGVILLLTLMATA 95
Cdd:COG1290 120 relNWIIGVLLLLLTMAEA 138
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-95 3.42e-65

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 200.51  E-value: 3.42e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00119 114 WNTGVILLLLLMATA 128
CYTB MTH00074
cytochrome b; Provisional
 1-95 5.47e-59

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 184.50  E-value: 5.47e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00074 114 WNIGVILLFLVMATA 128
CYTB MTH00100
cytochrome b; Provisional
 1-95 2.12e-58

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 182.92  E-value: 2.12e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00100 113 WNIGIILLFTVMATA 127
CYTB MTH00131
cytochrome b; Provisional
 1-95 2.69e-58

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 182.93  E-value: 2.69e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00131 113 WNIGVVLLLLVMMTA 127
CYTB MTH00156
cytochrome b; Provisional
 1-95 1.34e-55

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 175.36  E-value: 1.34e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00156 103 WMSGVIILFLVMATA 117
CYTB MTH00191
cytochrome b; Provisional
 1-95 4.85e-54

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 171.64  E-value: 4.85e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00191 110 WNVGVILLILSMATA 124
CYTB MTH00034
cytochrome b; Validated
 1-95 2.23e-51

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 164.88  E-value: 2.23e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00034 113 WNIGVILFLLTMLTA 127
CYTB MTH00145
cytochrome b; Provisional
 1-95 9.19e-51

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 163.54  E-value: 9.19e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00145 114 WNIGVTLLLLSMGTA 128
CYTB MTH00016
cytochrome b; Validated
 1-95 5.01e-49

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 159.07  E-value: 5.01e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00016 114 WNIGVILLLLTMATA 128
CYTB MTH00053
cytochrome b; Provisional
 1-95 7.42e-41

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 137.92  E-value: 7.42e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00053 114 WNVGVLIFLLMILTA 128
CYTB MTH00022
cytochrome b; Validated
 1-95 1.84e-40

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 136.75  E-value: 1.84e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00022 112 WNVGVVIFLLTMATA 126
CYTB MTH00224
cytochrome b; Provisional
 1-95 7.46e-40

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 135.05  E-value: 7.46e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00224 114 WNIGVILFILTMATA 128
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-95 7.21e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 127.87  E-value: 7.21e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112     1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSY--LFK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90
                ....*....|....*..
gi 459112    79 ETWNTGVILLLTLMATA 95
Cdd:cd00284 105 LTWVIGVILLLLTMATA 121
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-95 4.33e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 115.56  E-value: 4.33e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112       1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYG--SYLFK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90
                  ....*....|....*..
gi 459112      79 ETWNTGVILLLTLMATA 95
Cdd:pfam00033  96 LTWVIGVILLVLTMSTA 112
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-95 1.16e-31

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 113.73  E-value: 1.16e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112     1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYlfKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                        90
                ....*....|....*....
gi 459112    80 ---TWNTGVILLLTLMATA 95
Cdd:COG1290 120 relNWIIGVLLLLLTMAEA 138
CYTB MTH00033
cytochrome b; Provisional
 1-95 4.83e-31

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 111.95  E-value: 4.83e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00033 110 WIVGVLIFFIMMLTA 124
CYTB MTH00086
cytochrome b; Provisional
 1-95 3.53e-25

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 95.78  E-value: 3.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90
                 ....*....|....*
gi 459112     81 WNTGVILLLTLMATA 95
Cdd:MTH00086 102 WISGLTIYLLVMMEA 116
CYTB MTH00046
cytochrome b; Validated
 2-95 1.81e-16

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 72.32  E-value: 1.81e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      2 GSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90
                 ....*....|....
gi 459112     82 NTGVILLLTLMATA 95
Cdd:MTH00046 105 NVGFILYLLVMVEA 118
PRK03735 PRK03735
cytochrome b6; Provisional
 1-93 2.19e-14

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 65.50  E-value: 2.19e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSYLFKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90
                 ....*....|....*
gi 459112     80 -TWNTGVILLLTLMA 93
Cdd:PRK03735 124 lNWVVGVLIFFVTVG 138
petB CHL00070
cytochrome b6
 1-87 1.89e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 62.82  E-value: 1.89e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459112      1 FGSLLGICLATQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGSYYGSylFKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG--FKKp 113

                         90
                 ....*....|.
gi 459112     80 ---TWNTGVIL 87
Cdd:CHL00070 114 relTWVTGVVL 124
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-95 1.73e-04

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 37.99  E-value: 1.73e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 459112      56 SMFFICIYLHIGRGSYYGSYLFKE--TWNTGVILLLTLMATA 95
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEG 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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