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Conserved domains on  [gi|4559412|gb|AAD15304|]
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immobilization antigen, partial [Paramecium aurelia]

Protein Classification

PSA repeat domain-containing protein( domain architecture ID 10478833)

PSA (Paramecium Surface Antigen) repeat domain-containing protein; similar to Paramecium primaurelia G surface antigen

PubMed:  2426581|3974722

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 114-173 4.55e-10

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


:

Pssm-ID: 279805  Cd Length: 62  Bit Score: 55.95  E-value: 4.55e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4559412    114 TTHNSCNTTLNTCTVNNGATGCQPLATACTSYTTSENCKLTSANKKCVWTGL-ACRSATCA 173
Cdd:pfam01508   2 TTHADCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDGTsACVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 55-109 1.27e-04

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


:

Pssm-ID: 279805  Cd Length: 62  Bit Score: 40.54  E-value: 1.27e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 4559412     55 CTATSYPCISNNAGDGCIAKPTSCSS-LIQSNCQAG*KSTGDCYWNGA-ACVDKTCA 109
Cdd:pfam01508   7 CQAYLSTCTTNADGTGCVDLKATCSSyTTQAQCVKN-KTGGKCYWDGTsACVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 369-420 1.79e-04

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


:

Pssm-ID: 279805  Cd Length: 62  Bit Score: 40.15  E-value: 1.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 4559412    369 GLDHAKCQAYHTSCTS*NDGTGCQEF*ATCPAFTGDAAHCTASQQGKCYLSG 420
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDG 52
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 300-356 1.50e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


:

Pssm-ID: 279805  Cd Length: 62  Bit Score: 37.46  E-value: 1.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 4559412    300 DCQAVDTTC*VNSTGTGCIAIQSACTGYGQTAANCFRSTAGLCAMNAASpaTCQAVT 356
Cdd:pfam01508   6 DCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDGTS--ACVDKT 60
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 494-553 1.91e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


:

Pssm-ID: 279805  Cd Length: 62  Bit Score: 37.07  E-value: 1.91e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 4559412    494 FDSD*EC*TYQQSCTVARLG-ACQA-*TACASYKSLLQ*KFNTSGGKCFWNpTAKTCVDLNC 553
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADGtGCVDlKATCSSYTTQAQCVKNKTGGKCYWD-GTSACVDKTC 61
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 588-650 4.73e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


:

Pssm-ID: 279805  Cd Length: 62  Bit Score: 35.92  E-value: 4.73e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4559412    588 YTTHSDCQIASNKCTTNGT-TGCIAL-GACSSYTSQAGCYFN*e*vvlqs*viVSTGLCTWDTST 650
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADgTGCVDLkATCSSYTTQAQCVKN-----------KTGGKCYWDGTS 54
 
Name Accession Description Interval E-value
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 114-173 4.55e-10

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 55.95  E-value: 4.55e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4559412    114 TTHNSCNTTLNTCTVNNGATGCQPLATACTSYTTSENCKLTSANKKCVWTGL-ACRSATCA 173
Cdd:pfam01508   2 TTHADCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDGTsACVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 55-109 1.27e-04

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 40.54  E-value: 1.27e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 4559412     55 CTATSYPCISNNAGDGCIAKPTSCSS-LIQSNCQAG*KSTGDCYWNGA-ACVDKTCA 109
Cdd:pfam01508   7 CQAYLSTCTTNADGTGCVDLKATCSSyTTQAQCVKN-KTGGKCYWDGTsACVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 369-420 1.79e-04

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 40.15  E-value: 1.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 4559412    369 GLDHAKCQAYHTSCTS*NDGTGCQEF*ATCPAFTGDAAHCTASQQGKCYLSG 420
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDG 52
PSA smart00639
Paramecium Surface Antigen Repeat;
113-173 5.37e-04

Paramecium Surface Antigen Repeat;


Pssm-ID: 214756  Cd Length: 62  Bit Score: 38.67  E-value: 5.37e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 4559412     113 LTTHNSCNTTLNTCTVNNgaTGCQPLATACTSYTTSENCKLTSANK-KCVWTG--LACRSATCA 173
Cdd:smart00639   1 GTTDADCQAYLSTCTTNG--TGCVDKAATCSSYTTQAACETSKDGAgKCYWDGttTKCVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 300-356 1.50e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 37.46  E-value: 1.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 4559412    300 DCQAVDTTC*VNSTGTGCIAIQSACTGYGQTAANCFRSTAGLCAMNAASpaTCQAVT 356
Cdd:pfam01508   6 DCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDGTS--ACVDKT 60
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 494-553 1.91e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 37.07  E-value: 1.91e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 4559412    494 FDSD*EC*TYQQSCTVARLG-ACQA-*TACASYKSLLQ*KFNTSGGKCFWNpTAKTCVDLNC 553
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADGtGCVDlKATCSSYTTQAQCVKNKTGGKCYWD-GTSACVDKTC 61
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 588-650 4.73e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 35.92  E-value: 4.73e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4559412    588 YTTHSDCQIASNKCTTNGT-TGCIAL-GACSSYTSQAGCYFN*e*vvlqs*viVSTGLCTWDTST 650
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADgTGCVDLkATCSSYTTQAQCVKN-----------KTGGKCYWDGTS 54
 
Name Accession Description Interval E-value
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 114-173 4.55e-10

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 55.95  E-value: 4.55e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 4559412    114 TTHNSCNTTLNTCTVNNGATGCQPLATACTSYTTSENCKLTSANKKCVWTGL-ACRSATCA 173
Cdd:pfam01508   2 TTHADCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDGTsACVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 55-109 1.27e-04

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 40.54  E-value: 1.27e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 4559412     55 CTATSYPCISNNAGDGCIAKPTSCSS-LIQSNCQAG*KSTGDCYWNGA-ACVDKTCA 109
Cdd:pfam01508   7 CQAYLSTCTTNADGTGCVDLKATCSSyTTQAQCVKN-KTGGKCYWDGTsACVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 369-420 1.79e-04

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 40.15  E-value: 1.79e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 4559412    369 GLDHAKCQAYHTSCTS*NDGTGCQEF*ATCPAFTGDAAHCTASQQGKCYLSG 420
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDG 52
PSA smart00639
Paramecium Surface Antigen Repeat;
113-173 5.37e-04

Paramecium Surface Antigen Repeat;


Pssm-ID: 214756  Cd Length: 62  Bit Score: 38.67  E-value: 5.37e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 4559412     113 LTTHNSCNTTLNTCTVNNgaTGCQPLATACTSYTTSENCKLTSANK-KCVWTG--LACRSATCA 173
Cdd:smart00639   1 GTTDADCQAYLSTCTTNG--TGCVDKAATCSSYTTQAACETSKDGAgKCYWDGttTKCVDKTCA 62
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 300-356 1.50e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 37.46  E-value: 1.50e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 4559412    300 DCQAVDTTC*VNSTGTGCIAIQSACTGYGQTAANCFRSTAGLCAMNAASpaTCQAVT 356
Cdd:pfam01508   6 DCQAYLSTCTTNADGTGCVDLKATCSSYTTQAQCVKNKTGGKCYWDGTS--ACVDKT 60
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 494-553 1.91e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 37.07  E-value: 1.91e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 4559412    494 FDSD*EC*TYQQSCTVARLG-ACQA-*TACASYKSLLQ*KFNTSGGKCFWNpTAKTCVDLNC 553
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADGtGCVDlKATCSSYTTQAQCVKNKTGGKCYWD-GTSACVDKTC 61
Paramecium_SA pfam01508
Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found ...
 588-650 4.73e-03

Paramecium surface antigen domain; This domain is a cysteine rich extracellular repeat found in surface antigens of Paramecium. The domain contains 8 cysteine residues.


Pssm-ID: 279805  Cd Length: 62  Bit Score: 35.92  E-value: 4.73e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 4559412    588 YTTHSDCQIASNKCTTNGT-TGCIAL-GACSSYTSQAGCYFN*e*vvlqs*viVSTGLCTWDTST 650
Cdd:pfam01508   1 GTTHADCQAYLSTCTTNADgTGCVDLkATCSSYTTQAQCVKN-----------KTGGKCYWDGTS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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