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Conserved domains on  [gi|45551471|gb|AAD12350|]
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cytochrome b, partial (mitochondrion) [Phyllotis osgoodi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-42 1.33e-24

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 92.01  E-value: 1.33e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSS 65
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-42 1.33e-24

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 92.01  E-value: 1.33e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSS 65
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-42 1.84e-13

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 60.07  E-value: 1.84e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 45551471   1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSS 57
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-42 2.14e-12

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 57.01  E-value: 2.14e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 45551471     1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLS 48
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-42 1.26e-11

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 55.95  E-value: 1.26e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 45551471   1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFAS 74
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-42 1.33e-24

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 92.01  E-value: 1.33e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00100  24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSS 65
CYTB MTH00131
cytochrome b; Provisional
 1-42 1.60e-23

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 89.33  E-value: 1.60e-23
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00131  24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSS 65
CYTB MTH00119
cytochrome b; Provisional
 1-42 1.21e-21

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 84.18  E-value: 1.21e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00119  25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSS 66
CYTB MTH00074
cytochrome b; Provisional
 1-42 2.04e-21

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 83.58  E-value: 2.04e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00074  25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSS 66
CYTB MTH00156
cytochrome b; Provisional
 1-42 3.68e-21

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 82.52  E-value: 3.68e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00156  14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSS 55
CYTB MTH00191
cytochrome b; Provisional
 1-42 1.70e-20

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 80.73  E-value: 1.70e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00191  21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSS 62
CYTB MTH00145
cytochrome b; Provisional
 1-42 5.29e-19

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 76.87  E-value: 5.29e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00145  25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSS 66
CYTB MTH00034
cytochrome b; Validated
 1-42 5.51e-19

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 76.67  E-value: 5.51e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00034  24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSS 65
CYTB MTH00016
cytochrome b; Validated
 1-42 1.20e-16

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 70.09  E-value: 1.20e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00016  25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSS 66
CYTB MTH00053
cytochrome b; Provisional
 1-42 5.27e-15

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 65.50  E-value: 5.27e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00053  25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSS 66
CYTB MTH00022
cytochrome b; Validated
 1-42 5.54e-15

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 65.49  E-value: 5.54e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00022  23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFAS 64
CYTB MTH00224
cytochrome b; Provisional
 1-42 1.17e-14

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 64.56  E-value: 1.17e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00224  25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSS 66
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-42 1.84e-13

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 60.07  E-value: 1.84e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 45551471   1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:cd00284  16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSS 57
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-42 2.14e-12

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 57.01  E-value: 2.14e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 45551471     1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLS 48
CYTB MTH00033
cytochrome b; Provisional
 1-42 3.02e-12

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 58.03  E-value: 3.02e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00033  21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSS 62
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-42 1.26e-11

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 55.95  E-value: 1.26e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 45551471   1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:COG1290  33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFAS 74
CYTB MTH00086
cytochrome b; Provisional
 1-42 1.77e-10

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 53.02  E-value: 1.77e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 45551471    1 PSNISSWWNFGSLLGVCLIMQILTGLFLAMHYTSBTATAFSS 42
Cdd:MTH00086  13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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