|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10459 |
PRK10459 |
MOP flippase family protein; |
1-492 |
0e+00 |
|
MOP flippase family protein;
Pssm-ID: 236697 [Multi-domain] Cd Length: 492 Bit Score: 683.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 1 MSLRQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTL 80
Cdd:PRK10459 1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 81 YWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV 160
Cdd:PRK10459 81 YWLNVGLGIVVFVLVFLLSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 161 ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGA 240
Cdd:PRK10459 161 VSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 241 SVAGGYNLAYNVAVVPPAKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKW 320
Cdd:PRK10459 241 EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 321 NSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTILSYF 400
Cdd:PRK10459 321 NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYF 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 401 VMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFALQVMVGILSFILMIIFSRNALVMEIKNQLV 480
Cdd:PRK10459 401 LMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGHLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVKRQFC 480
|
490
....*....|..
gi 451908706 481 GSAKLKKLLRVG 492
Cdd:PRK10459 481 RSEKMKKLLRVG 492
|
|
| MATE_tuaB_like |
cd13127 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
7-415 |
9.52e-111 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240532 [Multi-domain] Cd Length: 406 Bit Score: 333.68 E-value: 9.52e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 7 TISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVG 86
Cdd:cd13127 1 AVSGAFWSAISQVVVQLLQFVVTIILARLLTPEDFGLVAMATVFIAFAQLFSDLGLSSALIQRKDLTEEDLSTVFWLNLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 87 LGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYW 166
Cdd:cd13127 81 LGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLSLSFLLSGLGSVPRALLQRELRFKKLAIIELISTLVSGVVAIVLALLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 167 PLALTAILGYLVNSAVRTLLFGYFGRkiYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGASVAGGY 246
Cdd:cd13127 161 FGVWALVAQQLVGALVSTVLLWILSR--WRPRLSFSLASLKELLSFGSKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 247 NLAYNVAVVPPAKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSIIPI 326
Cdd:cd13127 239 SRAYRLALLPVQNITGPITRVLFPALSRLQDDPERLRRAYLKALRLLALITFPLMVGLALLAEPLVLLLLGEKWLPAVPI 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 327 LQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLaGAIGVTLGFLVVQIINTILSYFVMIKPV 406
Cdd:cd13127 319 LQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY-GIIGVAIAYVIASLLSFPLNLYLAGRLI 397
|
....*....
gi 451908706 407 LGSSYRQYI 415
Cdd:cd13127 398 GISLLELLR 406
|
|
| Polysacc_synt_3 |
pfam13440 |
Polysaccharide biosynthesis protein; |
31-325 |
2.76e-60 |
|
Polysaccharide biosynthesis protein;
Pssm-ID: 404342 [Multi-domain] Cd Length: 293 Bit Score: 199.74 E-value: 2.76e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 31 VLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPD 110
Cdd:pfam13440 1 VLARLLSPEDFGVVAIATVVISFANIFVDMGFSSALIQKKDITETDYSTVFTFNLIFGALIYLILFALAPLIASFYNQPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 111 LAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAH----YWPLaltaILGYLVNSAVRTLL 186
Cdd:pfam13440 81 LVPVLRVLALVLILNGLSSVQTALLRRDLRFKKLFKITLTSSVIGGIVGIVLAYlgfgVWAL----VIGTLAQQLLSLVL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 187 fgYFGRKIYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGASVAGGYNLAYNVAVVPPAKLNPIITR 266
Cdd:pfam13440 157 --LWLASDWRPRLTFSLKVIKELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLALLPTANITSVITK 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 451908706 267 VLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSIIP 325
Cdd:pfam13440 235 VLFPALSRIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWLESVP 293
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
4-399 |
7.14e-34 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 131.22 E-value: 7.14e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 4 RQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLE-----LT 78
Cdd:COG2244 1 LKKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRFIAEYREEelrrlLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 79 TLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTF 158
Cdd:COG2244 81 TALLLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 159 TVISAHYWPLALTAILgylvnsavrtllfgyfgrkiyrpglhfslasvstnlRFGAWLTADSIVNYINTNLSTLVLARIL 238
Cdd:COG2244 161 ALLLALLGLGLWGLVL------------------------------------KYSLPLLLSGLLGLLLTNLDRLLLGALL 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 239 GASVAGGYNLAYNVAVVPpAKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVF 316
Cdd:COG2244 205 GPAAVGIYSAAYRLASLL-LLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLLF 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 317 GEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTI 396
Cdd:COG2244 284 GPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLVLLL 363
|
...
gi 451908706 397 LSY 399
Cdd:COG2244 364 LLL 366
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10459 |
PRK10459 |
MOP flippase family protein; |
1-492 |
0e+00 |
|
MOP flippase family protein;
Pssm-ID: 236697 [Multi-domain] Cd Length: 492 Bit Score: 683.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 1 MSLRQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTL 80
Cdd:PRK10459 1 MSLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQRQDISHLQLSTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 81 YWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV 160
Cdd:PRK10459 81 YWLNVGLGIVVFVLVFLLSPLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 161 ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGA 240
Cdd:PRK10459 161 VSAFFWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 241 SVAGGYNLAYNVAVVPPAKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKW 320
Cdd:PRK10459 241 EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEKW 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 321 NSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTILSYF 400
Cdd:PRK10459 321 NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYF 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 401 VMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFALQVMVGILSFILMIIFSRNALVMEIKNQLV 480
Cdd:PRK10459 401 LMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLKGHLALGMLLAVQVAAGVLAYLLMIVLSRHALVVEVKRQFC 480
|
490
....*....|..
gi 451908706 481 GSAKLKKLLRVG 492
Cdd:PRK10459 481 RSEKMKKLLRVG 492
|
|
| MATE_tuaB_like |
cd13127 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
7-415 |
9.52e-111 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240532 [Multi-domain] Cd Length: 406 Bit Score: 333.68 E-value: 9.52e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 7 TISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVG 86
Cdd:cd13127 1 AVSGAFWSAISQVVVQLLQFVVTIILARLLTPEDFGLVAMATVFIAFAQLFSDLGLSSALIQRKDLTEEDLSTVFWLNLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 87 LGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYW 166
Cdd:cd13127 81 LGLLLYLLLFLLAPLIAAFYNEPELIPLLRVLSLSFLLSGLGSVPRALLQRELRFKKLAIIELISTLVSGVVAIVLALLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 167 PLALTAILGYLVNSAVRTLLFGYFGRkiYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGASVAGGY 246
Cdd:cd13127 161 FGVWALVAQQLVGALVSTVLLWILSR--WRPRLSFSLASLKELLSFGSKLLGSNLLNYFSRNLDNLIIGKFLGAAALGYY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 247 NLAYNVAVVPPAKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSIIPI 326
Cdd:cd13127 239 SRAYRLALLPVQNITGPITRVLFPALSRLQDDPERLRRAYLKALRLLALITFPLMVGLALLAEPLVLLLLGEKWLPAVPI 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 327 LQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLaGAIGVTLGFLVVQIINTILSYFVMIKPV 406
Cdd:cd13127 319 LQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY-GIIGVAIAYVIASLLSFPLNLYLAGRLI 397
|
....*....
gi 451908706 407 LGSSYRQYI 415
Cdd:cd13127 398 GISLLELLR 406
|
|
| Polysacc_synt_3 |
pfam13440 |
Polysaccharide biosynthesis protein; |
31-325 |
2.76e-60 |
|
Polysaccharide biosynthesis protein;
Pssm-ID: 404342 [Multi-domain] Cd Length: 293 Bit Score: 199.74 E-value: 2.76e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 31 VLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPD 110
Cdd:pfam13440 1 VLARLLSPEDFGVVAIATVVISFANIFVDMGFSSALIQKKDITETDYSTVFTFNLIFGALIYLILFALAPLIASFYNQPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 111 LAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAH----YWPLaltaILGYLVNSAVRTLL 186
Cdd:pfam13440 81 LVPVLRVLALVLILNGLSSVQTALLRRDLRFKKLFKITLTSSVIGGIVGIVLAYlgfgVWAL----VIGTLAQQLLSLVL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 187 fgYFGRKIYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGASVAGGYNLAYNVAVVPPAKLNPIITR 266
Cdd:pfam13440 157 --LWLASDWRPRLTFSLKVIKELFSFGSWLLLSNLLNYLARNLDNLIIGKVLGTAALGLYSVAYRLALLPTANITSVITK 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 451908706 267 VLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSIIP 325
Cdd:pfam13440 235 VLFPALSRIQDDKAKLRELYLRVLRLIAFIVFPIMAGLAVVAEPLVLVLLGSQWLESVP 293
|
|
| Polysacc_synt |
pfam01943 |
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. ... |
10-276 |
3.48e-48 |
|
Polysaccharide biosynthesis protein; Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Pssm-ID: 426523 [Multi-domain] Cd Length: 274 Bit Score: 167.09 E-value: 3.48e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 10 GAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHL--ELTTLYWLNVGL 87
Cdd:pfam01943 4 NVIVLLLSQLITYLLAFVTLPYLARILGPEGFGLYAFALAFVGLLTIFTDFGFNAALVREIAKYREkyELVSLYWLNALL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 88 GIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYWP 167
Cdd:pfam01943 84 VKLVLVLLFLLLPLIAAFLGLPELAVLYRILALMFLLLPGVVQFRRGLFQGLERMKYALISQIVESLSRVILVFIAVFLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 168 LALTAILGYLVNSAVRTLLFG-YFGRKIYRPGLHF-SLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGASVAGG 245
Cdd:pfam01943 164 GDIVAALLYQVLAALVGGIIAlAVLRKIFRPRFVFpSLKLVRKLLSFGAPLFISSLAISLYTYIDSILLGLLLGAGAVGI 243
|
250 260 270
....*....|....*....|....*....|.
gi 451908706 246 YNLAYNVAVVPPAKLNPIITRVLFPAFAKIQ 276
Cdd:pfam01943 244 YNAAYQLLVAIQGLLNPIVTAVLFPVFSKLQ 274
|
|
| RfbX |
COG2244 |
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane ... |
4-399 |
7.14e-34 |
|
Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441845 [Multi-domain] Cd Length: 366 Bit Score: 131.22 E-value: 7.14e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 4 RQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLE-----LT 78
Cdd:COG2244 1 LKKLLKNTLWLLLGQLLGALLGFLLLPLLARLLGPEEYGLFALALSIVALLSVLADLGLSTALVRFIAEYREEelrrlLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 79 TLYWLNVGLGIVVFAVVFWLSDAIAHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTF 158
Cdd:COG2244 81 TALLLRLLLSLLLALLLLLLAPFIAALLGEPELALLLLLLALALLLSALSAVLLALLRGLERFKLLALINILSSLLSLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 159 TVISAHYWPLALTAILgylvnsavrtllfgyfgrkiyrpglhfslasvstnlRFGAWLTADSIVNYINTNLSTLVLARIL 238
Cdd:COG2244 161 ALLLALLGLGLWGLVL------------------------------------KYSLPLLLSGLLGLLLTNLDRLLLGALL 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 239 GASVAGGYNLAYNVAVVPpAKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVF 316
Cdd:COG2244 205 GPAAVGIYSAAYRLASLL-LLLITALSQVLFPRLSRLlaEGDREELRRLYRKALRLLLLLGLPLALGLALLAPPLLSLLF 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 317 GEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTI 396
Cdd:COG2244 284 GPEYAEAAPVLPILALGALFLALSGVLSNLLLALGRTRLLLIISLIGAVLNLVLNLLLIPRYGLVGAAIATLLSYLVLLL 363
|
...
gi 451908706 397 LSY 399
Cdd:COG2244 364 LLL 366
|
|
| MATE_Wzx_like |
cd13128 |
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; ... |
13-403 |
6.59e-26 |
|
Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240533 [Multi-domain] Cd Length: 402 Bit Score: 109.17 E-value: 6.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 13 WSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQ-----RKTIGHLELTTLYWLNVGL 87
Cdd:cd13128 7 WLFVGNIISKLLGFLVRVYLARYLGPEGFGILSLALAFVGLFSIFADLGLPTALVReiaryRKEKIREIISTSLVLKLIL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 88 GIVVFAVVFWLSDAIAHvlHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAHYWP 167
Cdd:cd13128 87 GILALLLLFLFAFLIAF--YDPELVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLGG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 168 LALTAILGYLVNSAVRTLLFGYFGRKIYRP--GLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLARILGASVAGG 245
Cdd:cd13128 165 GLIGFALAYLIASVLSAILLLYIYRKKILLpkFFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIMLGYFLGDAAVGI 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 246 YNLAYNVAVVPPAKLNPIiTRVLFPAFAK-IQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSII 324
Cdd:cd13128 245 YNAAYRIAELLLFIPSAI-STALFPRISElYKNDKDELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLFGEEYLPAA 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 325 PILQLLCVVGLLRSVGNPIGSLLMAKARVDISFK-------FNVFKTFLFIPAIligghlaGAIGVTLGFLVVQIINTIL 397
Cdd:cd13128 324 LVLQILAWGFLFIFLNGIFGSILQAIGKQKLTLKilligalLNVILNLLLIPKY-------GIIGAAIATLISEFIIFIL 396
|
....*.
gi 451908706 398 SYFVMI 403
Cdd:cd13128 397 LLYLLK 402
|
|
| MATE_epsE_like |
cd13129 |
Multidrug and toxic compound extrusion family and similar proteins; This model represents a ... |
9-403 |
4.85e-12 |
|
Multidrug and toxic compound extrusion family and similar proteins; This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins, including Ralstonia solanaceraum GMI1000 epsE, which may be involved in exporting exopolysaccharide EPS I, a virulence factor. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240534 [Multi-domain] Cd Length: 411 Bit Score: 67.51 E-value: 4.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 9 SGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIanSIIQRKTIGHLE----------LT 78
Cdd:cd13129 4 SGSFWSLGGLVASRGAVFLTNIMVARSLGKHVFGEFGVIQVTIGLLGTFAGFGL--GLAATKVIAETKdvdperagriIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 79 TLYWLNVGLGIVVFAVVFWLSDAIA-HVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFT 157
Cdd:cd13129 82 LSILLAVVTGALAATVLFLSATWIAiATLNAPHLAELLRIAAIILILTAFTGAQTGFLSGFEAFRAIARVNIWAGLLLLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 158 FTVISAHYWPLaLTAILGYLVNSAVRTLLFGYFGRKIY----------------RPGLHFSLASVSTNlrfgawltadSI 221
Cdd:cd13129 162 LMWIGVYIRGL-VGAVVILLASAAGNVASNSLILRRECqnqrgpvrtgltwqelRVLFKFSLPSVLSG----------SM 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 222 VNYINTNLSTLVLARILGASVAGGYNLAYNVAVVPPAKLNpIITRVLFPAFAKIQDDTE-KLRVNFYKLLSVVGIINFPA 300
Cdd:cd13129 231 GSPVHWIALAILVNQPNGYAELGLFNAANQWRQFITFLPA-TLGNVALPFLAENFGNNEgMFRQTFRSALLFGLGLSLPL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 301 LLGLMVVANNFVPLvFGEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGA 380
Cdd:cd13129 310 GCVFILASQIFAWL-YGKEYGSAAASMRSLAVAAILVGLSVLLGQIIASSGKIWRGFALNMVWSVIYVAAAYLLLRLYGA 388
|
410 420
....*....|....*....|...
gi 451908706 381 IGVTLGFLVVQIINTILSYFVMI 403
Cdd:cd13129 389 PGLALAMSAAYCVLIIFQTLTLQ 411
|
|
| MATE_like_10 |
cd13125 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
13-404 |
9.96e-08 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240530 [Multi-domain] Cd Length: 409 Bit Score: 54.08 E-value: 9.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 13 WSAIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGIANSIIQ-----RKTIGHLE--LTTLYWLNV 85
Cdd:cd13125 5 LSGISTLIKILAGLIINKVVAVYLGPSGVALLGQLQNFVTILQTIAGGGINNGVVKytaeyKDDEEKLArvWSTAFRITL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 86 GLGIVVFAVVFWLSDAIAHV-LHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTVISAH 164
Cdd:cd13125 85 ILSILGGLLLLLFSKPLSSLlFGDIDYSWVFILLGLALPLFALNNLLLAILNGLKEIKRYALINIISSLIGLLVSVLLVY 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 165 YWPLAlTAILGYLVNSAVRTLLFGYFGRKIYRPGLH-FSLASVSTNLRFGAWLTADSIVNYINTNLSTLV----LARILG 239
Cdd:cd13125 165 FYGLK-GALLALVLNQSLIFLVTLIYSRKQPWFKLKyLWGRLDKDIIKKLLKFSLMALVSALSLPLSQIIvrniLIRQLG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 240 ASVAGGYNLAYNVAVVPPAKLNPIITRVLFPAFAKIQDdTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEK 319
Cdd:cd13125 244 WEAAGYWQAVWKISDVYLGFITTALSTYYLPRLSAIKD-NKELKREVNKQLKVILPLVAIGALLIYLLRDLIIQILFSEE 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 320 WNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQIINTILSY 399
Cdd:cd13125 323 FLPARELFLWQLIGDFFKIASWLLGYILLAKGMTKLFIITEILFALLFVLLSLLFIPLFGLEGAGIAYAINYILYLILMY 402
|
....*
gi 451908706 400 FVMIK 404
Cdd:cd13125 403 FIFRK 407
|
|
| MATE_like_11 |
cd13126 |
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This ... |
79-393 |
1.06e-07 |
|
Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240531 [Multi-domain] Cd Length: 396 Bit Score: 53.85 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 79 TLYWLNVGLGIVVFAVVFWLSDAIAHVLhnpdlapliktLSLAFIVIPHGQQ--FRALMQKELEFNKIGMIETTSVLAGF 156
Cdd:cd13126 78 TALAVGLALGLVTALVGALLGGTVGSPL-----------VALGVVLPGLLLQdaWRGAFFAQGRPGRAAANDLVWAVAQL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 157 TFTVISAHYWPLALTAILGyLVNSAVRTLLFGYFGRKIyRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLVLAR 236
Cdd:cd13126 147 AGAMLIVALVSGVAAALLA-WGASAVVAALLGRAQAGL-WPRPRGALAWLREHRDLTGYLLAEFVLGQGAAQNSDLLLGA 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 237 ILGASVAGGYNLAyNVAVVPPAKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLS-VVGIINFPALLGLMVVANNFVPLV 315
Cdd:cd13126 225 LGSLAAVGALRGA-QTLLGPLTILAAGLVTAAVPELARRKDMSPRRRRRAALVLSgVVAAAALVWGLALLLLPDLIGEAL 303
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 451908706 316 FGEKWNSIIPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQII 393
Cdd:cd13126 304 LGDVWAGAQALLLPLILAQAGAALAVGPAAYLLALGRAKGTLRVNLVGAPQLLGLGLTGALLGGAVGAAWGLALALLL 381
|
|
| MATE_SpoVB_like |
cd13124 |
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related ... |
15-126 |
4.20e-05 |
|
Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins; The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).
Pssm-ID: 240529 [Multi-domain] Cd Length: 434 Bit Score: 45.92 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 15 AIATIVIIGLGLIQMTVLARIIDNHQFGLLTVSLVIIALADTISDFGI----------ANSIIQRKTIGHLELTTLYWLn 84
Cdd:cd13124 4 TIAGLISKILGAIYRIPLQNIIGDEGMGLYQMAYPIYGIFLTLATAGIpvaisklvaeYNALGDYKGARRIFRVSLILL- 82
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 451908706 85 VGLGIVVFAVVFWLSDAIA-HVLHNPDLAPLIKTLSLAFIVIP 126
Cdd:cd13124 83 LILGLVFFLLLFFGAPFLAqLLLGDPRLAPVIRALAPAILIVP 125
|
|
| MATE_like |
cd12082 |
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane ... |
11-398 |
9.34e-05 |
|
Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.
Pssm-ID: 240527 [Multi-domain] Cd Length: 420 Bit Score: 44.62 E-value: 9.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 11 AKWSAIATIVIIGLGLIQMTVLARIIDN--HQFGLLTVSLVIIALADTISDFGIANSIIQRKTIGHLE-----LTTLYWL 83
Cdd:cd12082 1 AAPLLLSMLLQTLYNLVDTFFLGRLLGDalAAVGLAFPLIALLIALGVGLSVGTSALISQAIGAGDEEkarrvLVQSIVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 84 NVGLGIVVFAVVFWLSDAIAHVLHNPDL-----APLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTF 158
Cdd:cd12082 81 AILLGLLLAALLLFFSPLILSLLGAEEEvielaATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 159 TVISAHYW--------PLALTAILGYLVNS--AVRTLLFGYFGRKIYRPGLHFSLASVSTNLRFGAWLTADSIVNYINTN 228
Cdd:cd12082 161 DPLLIFGLgppelgiaGAALATVISYVIGAllLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 229 LSTLVLARILGASVAGGYNLAYNVAVVPPAKLNPIITRVL-FPAFAKIQDDTEKLRVNFYKLLSVVGIINFpALLGLMVV 307
Cdd:cd12082 241 IIVAIVAAFGGAAALAAYTVAFRIASLAFMPALGLAQAALpVVGQNLGAGNFDRARRITWVALLIGLLIGA-VLGLLILL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 308 ANNFVPLVF--GEKWNSI-IPILQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTF-LFIPAILIGGHLA-GAIG 382
Cdd:cd12082 320 FPEPILSLFtnDPEFLELaVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWvVRLPLAYVLAYLGlGLYG 399
|
410
....*....|....*.
gi 451908706 383 VTLGFLVVQIINTILS 398
Cdd:cd12082 400 IWLALVISLILAALVL 415
|
|
| MurJ |
COG0728 |
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope ... |
158-468 |
1.99e-03 |
|
Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440492 [Multi-domain] Cd Length: 503 Bit Score: 40.52 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 158 FTVISAHYWPLALTAI-LGYLVNSAVRTLLFGYFGRKI---YRPGLHFSLASVSTNLRFGAWLTADSIVNYINTNLSTLV 233
Cdd:COG0728 169 GLLLLAPLFGPGIYALaWGVLLGGVLQLLIQLPALRRLglrLRPRFDLRDPGVRRVLKLMLPALLGVSVSQINLLVDTIL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 234 LARILGASVAGgYNLAYNVAVVPPAKLNPIITRVLFPAFAKI--QDDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNF 311
Cdd:COG0728 249 ASFLPEGSVSA-LYYADRLYQLPLGLFGVAIGTALLPRLSRAaaAGDLEEFRRTLSRGLRLVLLLTLPAAVGLIVLAEPI 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 312 VPLVFG------EKWNSIIPILQLLCvVGLLRSVGNPIGS-LLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVT 384
Cdd:COG0728 328 VRLLFErgaftaEDTALTALALAAYA-LGLPAFALVKVLArAFYARQDTRTPVRIAVIAVVVNIVLNLLLVPPLGHAGLA 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 451908706 385 LGFLVVQIINTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLS-----GVFALQVMVGILS 459
Cdd:COG0728 407 LATSLSALVNALLLLVLLRRRLGGLPLRGILRTLLKLLLASLVMGAVLWLLLRLLGDWLGGGllgrlLALALLILVGAAV 486
|
....*....
gi 451908706 460 FILMIIFSR 468
Cdd:COG0728 487 YFALLLLLG 495
|
|
| |
