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Conserved domains on  [gi|449468974|ref|XP_004152196|]
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pseudo histidine-containing phosphotransfer protein 6 [Cucumis sativus]

Protein Classification

Hpt domain-containing protein( domain architecture ID 10483122)

Hpt (histidine-containing phosphotransfer) domain-containing protein which may be involved in phosphotransfer signal transduction

CATH:  1.20.120.160
Gene Ontology:  GO:0000160|GO:0009927
PubMed:  9054511|11406410
SCOP:  4000835

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Hpt pfam01627
Hpt domain; The histidine-containing phosphotransfer (HPt) domain is a novel protein module ...
47-127 6.94e-06

Hpt domain; The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).


:

Pssm-ID: 426352 [Multi-domain]  Cd Length: 84  Bit Score: 41.95  E-value: 6.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449468974   47 EVVNIYFQESERLLKNLRALLierDLTDYKKMGNHLNQLMGSSSSIGANRVRNVCIAFRANSEQNNRAGCLRALEVLEHE 126
Cdd:pfam01627   1 ELLELFLEEAPELLEQLEQAL---DAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREGELPLDPELLEALRDL 77

                  .
gi 449468974  127 Y 127
Cdd:pfam01627  78 L 78
 
Name Accession Description Interval E-value
Hpt pfam01627
Hpt domain; The histidine-containing phosphotransfer (HPt) domain is a novel protein module ...
47-127 6.94e-06

Hpt domain; The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).


Pssm-ID: 426352 [Multi-domain]  Cd Length: 84  Bit Score: 41.95  E-value: 6.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449468974   47 EVVNIYFQESERLLKNLRALLierDLTDYKKMGNHLNQLMGSSSSIGANRVRNVCIAFRANSEQNNRAGCLRALEVLEHE 126
Cdd:pfam01627   1 ELLELFLEEAPELLEQLEQAL---DAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREGELPLDPELLEALRDL 77

                  .
gi 449468974  127 Y 127
Cdd:pfam01627  78 L 78
 
Name Accession Description Interval E-value
Hpt pfam01627
Hpt domain; The histidine-containing phosphotransfer (HPt) domain is a novel protein module ...
47-127 6.94e-06

Hpt domain; The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).


Pssm-ID: 426352 [Multi-domain]  Cd Length: 84  Bit Score: 41.95  E-value: 6.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449468974   47 EVVNIYFQESERLLKNLRALLierDLTDYKKMGNHLNQLMGSSSSIGANRVRNVCIAFRANSEQNNRAGCLRALEVLEHE 126
Cdd:pfam01627   1 ELLELFLEEAPELLEQLEQAL---DAEDLEALFRAAHTLKGSAGSLGLPALAELAHELEDLLREGELPLDPELLEALRDL 77

                  .
gi 449468974  127 Y 127
Cdd:pfam01627  78 L 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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