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Conserved domains on  [gi|449458205|ref|XP_004146838|]
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zinc finger protein CONSTANS-LIKE 4 [Cucumis sativus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 3-45 3.76e-11

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


:

Pssm-ID: 380879  Cd Length: 44  Bit Score: 56.92  E-value: 3.76e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 449458205   3 KCELCGHQ-ARMFCESDQANLCWDCDEKVHCANFLVAKHSRTLL 45
Cdd:cd19821    1 LCDSCESApAVVYCRADRASLCRACDAKVHSANKLASRHQRVPL 44
 
Name Accession Description Interval E-value
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 3-45 3.76e-11

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


Pssm-ID: 380879  Cd Length: 44  Bit Score: 56.92  E-value: 3.76e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 449458205   3 KCELCGHQ-ARMFCESDQANLCWDCDEKVHCANFLVAKHSRTLL 45
Cdd:cd19821    1 LCDSCESApAVVYCRADRASLCRACDAKVHSANKLASRHQRVPL 44
BBOX smart00336
B-Box-type zinc finger;
3-45 3.17e-06

B-Box-type zinc finger;


Pssm-ID: 197662 [Multi-domain]  Cd Length: 42  Bit Score: 43.09  E-value: 3.17e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 449458205     3 KCELCGHQ-ARMFCESDQANLCWDCDEKVHcanflvAKHSRTLL 45
Cdd:smart00336   5 KCDSHGDEpAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42
zf-B_box pfam00643
B-box zinc finger;
1-31 3.85e-03

B-box zinc finger;


Pssm-ID: 459886 [Multi-domain]  Cd Length: 42  Bit Score: 34.37  E-value: 3.85e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 449458205    1 MIKCELCGHQ-ARMFCESDQANLCWDCDEKVH 31
Cdd:pfam00643   3 ERLCPEHEEEpLTLYCNDCQELLCEECSVGEH 34
 
Name Accession Description Interval E-value
Bbox1_BBX-like cd19821
B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and ...
 3-45 3.76e-11

B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins; The BBX family includes a group of zinc finger transcription factors that contain one or two B-box motifs, and sometimes also feature a CCT (CONSTANS, CO-like, and TOC1) domain. They play important roles in plant growth and development, including seedling photomorphogenesis, photoperiodic regulation of flowering, shade avoidance, and responses to biotic and abiotic stresses. Their B-box motifs show high sequence similarity with B-Box-type 1 zinc finger found in tripartite motif-containing proteins (TRIMs) and are involved in mediating transcriptional regulation and protein-protein interaction in plant signaling. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif; this family contains a modified motif, C3XC2H2, where X can be D, E, C or H.


Pssm-ID: 380879  Cd Length: 44  Bit Score: 56.92  E-value: 3.76e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 449458205   3 KCELCGHQ-ARMFCESDQANLCWDCDEKVHCANFLVAKHSRTLL 45
Cdd:cd19821    1 LCDSCESApAVVYCRADRASLCRACDAKVHSANKLASRHQRVPL 44
BBOX smart00336
B-Box-type zinc finger;
3-45 3.17e-06

B-Box-type zinc finger;


Pssm-ID: 197662 [Multi-domain]  Cd Length: 42  Bit Score: 43.09  E-value: 3.17e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 449458205     3 KCELCGHQ-ARMFCESDQANLCWDCDEKVHcanflvAKHSRTLL 45
Cdd:smart00336   5 KCDSHGDEpAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42
zf-B_box pfam00643
B-box zinc finger;
1-31 3.85e-03

B-box zinc finger;


Pssm-ID: 459886 [Multi-domain]  Cd Length: 42  Bit Score: 34.37  E-value: 3.85e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 449458205    1 MIKCELCGHQ-ARMFCESDQANLCWDCDEKVH 31
Cdd:pfam00643   3 ERLCPEHEEEpLTLYCNDCQELLCEECSVGEH 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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