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Conserved domains on  [gi|449458139|ref|XP_004146805|]
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pentatricopeptide repeat-containing protein At1g19720 [Cucumis sativus]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 138-632 3.77e-66

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 233.59  E-value: 3.77e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 138 ALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRMVSDIVIENALMDFYGNCG 217
Cdd:PLN03077  56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 218 DLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISW------------------------- 272
Cdd:PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargrevhahvvr 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 273 ----------NALVSGFARYGETNTALTYLEAMqeeglrPRVN--SWNGVISGCVQNGYFKDALDVFINMLLFPENPNSV 340
Cdd:PLN03077 216 fgfeldvdvvNALITMYVKCGDVVSARLVFDRM------PRRDciSWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 341 TVASILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKKNITLWNEIIATYMNQGK 420
Cdd:PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 421 NSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQ---KVEAYEL---------------LSDMLQE-----------NL 471
Cdd:PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDldvGVKLHELaerkglisyvvvanaLIEMYSKckcidkalevfHN 449

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 472 VP--NVISLNVLVSGFQQSGLNYEALELCQTMLCTgsllnktiafpVIPNTVTLTAALAACASLNLLHKGKEIHGYMLRN 549
Cdd:PLN03077 450 IPekDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-----------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 550 YFVNNYFISSALINMYAKCGDIDSAIQVFSrIKNRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLP 629
Cdd:PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597


                 ...
gi 449458139 630 ALS 632
Cdd:PLN03077 598 ACS 600
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 138-632 3.77e-66

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 233.59  E-value: 3.77e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 138 ALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRMVSDIVIENALMDFYGNCG 217
Cdd:PLN03077  56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 218 DLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISW------------------------- 272
Cdd:PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargrevhahvvr 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 273 ----------NALVSGFARYGETNTALTYLEAMqeeglrPRVN--SWNGVISGCVQNGYFKDALDVFINMLLFPENPNSV 340
Cdd:PLN03077 216 fgfeldvdvvNALITMYVKCGDVVSARLVFDRM------PRRDciSWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 341 TVASILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKKNITLWNEIIATYMNQGK 420
Cdd:PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 421 NSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQ---KVEAYEL---------------LSDMLQE-----------NL 471
Cdd:PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDldvGVKLHELaerkglisyvvvanaLIEMYSKckcidkalevfHN 449

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 472 VP--NVISLNVLVSGFQQSGLNYEALELCQTMLCTgsllnktiafpVIPNTVTLTAALAACASLNLLHKGKEIHGYMLRN 549
Cdd:PLN03077 450 IPekDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-----------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 550 YFVNNYFISSALINMYAKCGDIDSAIQVFSrIKNRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLP 629
Cdd:PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597


                 ...
gi 449458139 630 ALS 632
Cdd:PLN03077 598 ACS 600
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 438-485 2.00e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.00  E-value: 2.00e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 449458139  438 PDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVLVSGF 485
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 235-268 3.52e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 3.52e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 449458139  235 VSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPD 268
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 208-470 2.87e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 2.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 208 ALMDFYGNCGDLSSSINVFDSMSEKD---VVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKpDLISWNALVSGFARYGE 284
Cdd:COG2956   47 ALGNLYRRRGEYDRAIRIHQKLLERDpdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPD-DAEALRLLAEIYEQEGD 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 285 TNTALTYLEAMQEEGlRPRVNSWNGVISGCVQNGYFKDALDVFINMLlfPENPNSVtvasilpacaglrdlglgRAVHAY 364
Cdd:COG2956  126 WEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKAL--KLDPDCA------------------RALLLL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 365 AlkcelctniyvegslvDMYSKCGQDDRAEEIFAKAEKKN---ITLWNEIIATYMNQGKNSWALEHFRsmQHHGLKPDVV 441
Cdd:COG2956  185 A----------------ELYLEQGDYEEAIAALERALEQDpdyLPALPRLAELYEKLGDPEEALELLR--KALELDPSDD 246

                        250       260
                 ....*....|....*....|....*....
gi 449458139 442 TYNTLLAGYAKNGQKVEAYELLSDMLQEN 470
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQLRRH 275
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 138-632 3.77e-66

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 233.59  E-value: 3.77e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 138 ALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRMVSDIVIENALMDFYGNCG 217
Cdd:PLN03077  56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 218 DLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISW------------------------- 272
Cdd:PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargrevhahvvr 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 273 ----------NALVSGFARYGETNTALTYLEAMqeeglrPRVN--SWNGVISGCVQNGYFKDALDVFINMLLFPENPNSV 340
Cdd:PLN03077 216 fgfeldvdvvNALITMYVKCGDVVSARLVFDRM------PRRDciSWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 341 TVASILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKKNITLWNEIIATYMNQGK 420
Cdd:PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 421 NSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQ---KVEAYEL---------------LSDMLQE-----------NL 471
Cdd:PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDldvGVKLHELaerkglisyvvvanaLIEMYSKckcidkalevfHN 449

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 472 VP--NVISLNVLVSGFQQSGLNYEALELCQTMLCTgsllnktiafpVIPNTVTLTAALAACASLNLLHKGKEIHGYMLRN 549
Cdd:PLN03077 450 IPekDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-----------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 550 YFVNNYFISSALINMYAKCGDIDSAIQVFSrIKNRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLP 629
Cdd:PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597


                 ...
gi 449458139 630 ALS 632
Cdd:PLN03077 598 ACS 600
PLN03077 PLN03077
Protein ECB2; Provisional
 115-509 2.56e-53

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 196.99  E-value: 2.56e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 115 VKCVD--SDSKVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHG 192
Cdd:PLN03077 233 VKCGDvvSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 193 YAIRKRMVSDIVIENALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISW 272
Cdd:PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 273 NALVSGFARYGETNTALTYLEAMQEEGL-------------------------------RPRVNSWNGVISG-CVQNGYF 320
Cdd:PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLisyvvvanaliemyskckcidkalevfhnipEKDVISWTSIIAGlRLNNRCF 472

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 321 kDALDVFINMLLFPEnPNSVTVASILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFaKA 400
Cdd:PLN03077 473 -EALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NS 549

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 401 EKKNITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQE-NLVPNVISLN 479
Cdd:PLN03077 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYA 629

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 449458139 480 VLVSGFQQSGLNYEALELCQTMLCT------GSLLN 509
Cdd:PLN03077 630 CVVDLLGRAGKLTEAYNFINKMPITpdpavwGALLN 665
PLN03077 PLN03077
Protein ECB2; Provisional
 273-650 1.26e-44

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 171.57  E-value: 1.26e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 273 NALVSGFARYGETNTALTYLEAMQEEGLRprvnSWNGVISGCVQNGYFKDALDVFINMLLFPENPNSVTVASILPACAGL 352
Cdd:PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLF----SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 353 RDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKKNITLWNEIIATYMNQGKNSWALEHFRSMQ 432
Cdd:PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 433 HHGLKPDVVT-----------------------------------YNTLLAGYAKNGQKVEAYELLSDMLQENLVpnviS 477
Cdd:PLN03077 281 ELSVDPDLMTitsvisacellgderlgremhgyvvktgfavdvsvCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----S 356

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 478 LNVLVSGFQQSGLNYEALELCQTMLCTGsllnktiafpVIPNTVTLTAALAACASLNLLHKGKEIHGYMLRNYFVNNYFI 557
Cdd:PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDN----------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 558 SSALINMYAKCGDIDSAIQVFSRIKNRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEgIKPSSATFSILLPALSERADL 637
Cdd:PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGAL 505

                        410
                 ....*....|...
gi 449458139 638 KVRRQLHSYIIKS 650
Cdd:PLN03077 506 MCGKEIHAHVLRT 518
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 233-634 6.55e-36

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 144.24  E-value: 6.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 233 DVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLRprvnSWNGVIS 312
Cdd:PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIG 197

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 313 GCVQNGYFKDALDVFINMLLFPENPNSVTVASILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDR 392
Cdd:PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 393 AEEIFAKAEKKNITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQkveayellsdmlqenlv 472
Cdd:PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL----------------- 340

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 473 pnvislnvlvsgfqqsglnyeaLELcqtmlctgsllnktiafpvipntvtltaalaacaslnllhkGKEIHGYMLRNYFV 552
Cdd:PLN03081 341 ----------------------LEH-----------------------------------------AKQAHAGLIRTGFP 357

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 553 NNYFISSALINMYAKCGDIDSAIQVFSRIKNRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLPA-- 630
Cdd:PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAcr 437


                 ....*..
gi 449458139 631 ---LSER 634
Cdd:PLN03081 438 ysgLSEQ 444
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 123-497 2.11e-32

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 133.46  E-value: 2.11e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 123 KVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRMVSD 202
Cdd:PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 203 IVIENALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKpdliswnalvsgfary 282
Cdd:PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---------------- 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 283 getntaltyleamqeeglrprvnswngvisgcvqngyfkdaLDVFinmllfpenpnsvTVASILPACAGLRDLGLGRAVH 362
Cdd:PLN03081 323 -----------------------------------------IDQF-------------TFSIMIRIFSRLALLEHAKQAH 348

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 363 AYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKAEKKNITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVT 442
Cdd:PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 449458139 443 YNTLLAGYAKNGQKVEAYELLSDMLQENLV-PNVISLNVLVSGFQQSGLNYEALEL 497
Cdd:PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIkPRAMHYACMIELLGREGLLDEAYAM 484
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 116-411 1.45e-27

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 118.43  E-value: 1.45e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 116 KC--VDSDSKVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGY 193
Cdd:PLN03081 271 KCgdIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 194 AIRKRMVSDIVIENALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWN 273
Cdd:PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 274 ALVSGFARYGETNTALTYLEAMQE-EGLRPRVNSWNGVISGCVQNGYFKDALdVFINMLlfPENPNSVTVASILPACAGL 352
Cdd:PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSEnHRIKPRAMHYACMIELLGREGLLDEAY-AMIRRA--PFKPTVNMWAALLTACRIH 507

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 449458139 353 RDLGLGR--AVHAYALKCELCTNiYVEgsLVDMYSKCGQDDRAEEIFAKAEKKNITL-----WNEI 411
Cdd:PLN03081 508 KNLELGRlaAEKLYGMGPEKLNN-YVV--LLNLYNSSGRQAEAAKVVETLKRKGLSMhpactWIEV 570
PLN03077 PLN03077
Protein ECB2; Provisional
 107-389 9.93e-27

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 116.49  E-value: 9.93e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 107 LTKFYVKdVKCVDSDSKVFDEIPERTLPAYAALIRAYCRSEKWNELFAAFRSMVDEgILPDKYLVPTILKACSRRQMVKT 186
Cdd:PLN03077 430 LIEMYSK-CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMC 507

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 187 GKMAHGYAIRKRMVSDIVIENALMDFYGNCGDLSSSINVFDSmSEKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLK 266
Cdd:PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 267 PDLISWNALVSGFARYGETNTALTYLEAMQEE-GLRPRVNSWNGVISGCVQNGYFKDALDvFINMLlfPENPNSVTVASI 345
Cdd:PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYN-FINKM--PITPDPAVWGAL 663

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 449458139 346 LPACAGLRDLGLGRAVHAYALKCEL-CTNIYVegSLVDMYSKCGQ 389
Cdd:PLN03077 664 LNACRIHRHVELGELAAQHIFELDPnSVGYYI--LLCNLYADAGK 706
PLN03077 PLN03077
Protein ECB2; Provisional
 308-653 4.53e-26

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 114.18  E-value: 4.53e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 308 NGVISGCVQNGYFKDALDVFINMLLFPENPNSVTVASILPACAGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKC 387
Cdd:PLN03077  55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 388 GQDDRAEEIFAKAEKKNITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVTY------------------------ 443
Cdd:PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcvlrtcggipdlargrevhahvv 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 444 -----------NTLLAGYAKNGQKVEAYELLSDMlqenLVPNVISLNVLVSGFQQSGLNYEALELCQTMLctgsllnkti 512
Cdd:PLN03077 215 rfgfeldvdvvNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMR---------- 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 513 AFPVIPNTVTLTAALAACASLNLLHKGKEIHGYMLRNYFVNNYFISSALINMYAKCGDIDSAIQVFSRIKNRNVVCWNAL 592
Cdd:PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 449458139 593 IAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHL 653
Cdd:PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 431-650 1.29e-21

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 99.94  E-value: 1.29e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 431 MQHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVpnviSLNVLVSGFQQSGLNYEALELCQTMLCTGSllnk 510
Cdd:PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDGS---- 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 511 tiafpvIPNTVTLTAALAACASLNLLHKGKEIHGYMLRNYFVNNYFISSALINMYAKCGDIDSAIQVFSRIKNRNVVCWN 590
Cdd:PLN03081 221 ------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 591 ALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKS 650
Cdd:PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 233-481 2.97e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 92.63  E-value: 2.97e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  233 DVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNGVIS 312
Cdd:PLN03218  471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  313 GCVQNGYFKDALDVFINML--LFPENPNSVTVASILPACAGLRDLGLGRAV----HAYALK------------C------ 368
Cdd:PLN03218  551 ACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVyqmiHEYNIKgtpevytiavnsCsqkgdw 630

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  369 ELCTNIYVE-------------GSLVDMYSKCGQDDRAEEIFAKAEKKNITLWNEIIATYMNQGKNS--W--ALEHFRSM 431
Cdd:PLN03218  631 DFALSIYDDmkkkgvkpdevffSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAknWkkALELYEDI 710

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 449458139  432 QHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVL 481
Cdd:PLN03218  711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 129-485 1.74e-14

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 77.22  E-value: 1.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  129 PERTLpaYAALIRAYCRSEKWNELFAAFRSMVDEG--ILPDKYLVPTILKACSRRQMVKTGK----MAHGYAIRkrmvSD 202
Cdd:PLN03218  540 PDRVV--FNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKevyqMIHEYNIK----GT 613

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  203 IVIENALMDFYGNCGDLSSSINVFDSMSEKDV----VSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSG 278
Cdd:PLN03218  614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  279 FARYGETNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFKDALDVFINMLLFPENPNSVTVASILPACAGLRDLGLG 358
Cdd:PLN03218  694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  359 RAVHAYALKCELCTNIYVEGSLVDMyskCGQddRAEEIFAKAEKknitLWNeiiatyMNQGK-------NSWALEHFRSM 431
Cdd:PLN03218  774 LDLLSQAKEDGIKPNLVMCRCITGL---CLR--RFEKACALGEP----VVS------FDSGRpqienkwTSWALMVYRET 838

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 449458139  432 QHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVLVSGF 485
Cdd:PLN03218  839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 438-485 2.00e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.00  E-value: 2.00e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 449458139  438 PDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVLVSGF 485
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 584-631 6.04e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.76  E-value: 6.04e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 449458139  584 RNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLPAL 631
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 540-649 7.80e-11

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 65.28  E-value: 7.80e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 540 KEIHGYMLRNYFVNNYFISSALINMYAKCGDIDSAIQVFSRIKNRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKP 619
Cdd:PLN03081 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

                         90       100       110
                 ....*....|....*....|....*....|
gi 449458139 620 SSATFSILLPALSERADLKVRRQLHSYIIK 649
Cdd:PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLK 252
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 232-281 1.31e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.31e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 449458139  232 KDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGFAR 281
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 265-636 1.33e-09

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 61.43  E-value: 1.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  265 LKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNGVISGCVQNGYFKDALDVFINMLLFPENPNSVTVAS 344
Cdd:PLN03218  433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  345 ILPACAglRDLGLGRAVHAYALKceLCTNI----YVEGSLVDMYSKCGQDDRAEEIFA--KAEKKNI----TLWNEIIAT 414
Cdd:PLN03218  513 LIDGCA--RAGQVAKAFGAYGIM--RSKNVkpdrVVFNALISACGQSGAVDRAFDVLAemKAETHPIdpdhITVGALMKA 588

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  415 YMNQGKNSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVLVSGFQQSGLNYEA 494
Cdd:PLN03218  589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  495 LELCQTMLCTGSLLNkTIAFpvipntvtltaalaacaslnllhkgkeihgymlrnyfvnnyfisSALINMYAKCGDIDSA 574
Cdd:PLN03218  669 FEILQDARKQGIKLG-TVSY--------------------------------------------SSLMGACSNAKNWKKA 703

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 449458139  575 IQVFSRIK----NRNVVCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSSATFSILLPAlSERAD 636
Cdd:PLN03218  704 LELYEDIKsiklRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKD 768
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 434-466 3.38e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 49.65  E-value: 3.38e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 449458139  434 HGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDM 466
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 402-653 3.81e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.81  E-value: 3.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  402 KKNITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVL 481
Cdd:PLN03218  469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  482 VSGFQQSGLNYEALELCQTMlctgsllnKTIAFPVIPNTVTLTAALAACASLNLLHKGKEIHGyMLRNYFVNNYF-ISSA 560
Cdd:PLN03218  549 ISACGQSGAVDRAFDVLAEM--------KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPeVYTI 619

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  561 LINMYAKCGDIDSAIQVFSRIKNRNV----VCWNALI-----AGLLrtmqhKMAVELFCQMLVEGIKPSSATFSILLPAL 631
Cdd:PLN03218  620 AVNSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVdvaghAGDL-----DKAFEILQDARKQGIKLGTVSYSSLMGAC 694

                         250       260
                  ....*....|....*....|..
gi 449458139  632 SERADLKVRRQLHSYiIKSQHL 653
Cdd:PLN03218  695 SNAKNWKKALELYED-IKSIKL 715
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 403-452 4.38e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.67  E-value: 4.38e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 449458139  403 KNITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVTYNTLLAGYAK 452
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 428-485 8.41e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 49.28  E-value: 8.41e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 449458139  428 FRSMQHHGLKPDVVTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNVISLNVLVSGF 485
Cdd:pfam13812   3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 256-317 2.83e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 47.74  E-value: 2.83e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 449458139  256 VFHSMQSSGLKPDLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNGVISGCVQN 317
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 235-268 3.52e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 3.52e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 449458139  235 VSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPD 268
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 441-475 1.52e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.06  E-value: 1.52e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 449458139  441 VTYNTLLAGYAKNGQKVEAYELLSDMLQENLVPNV 475
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 208-470 2.87e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 2.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 208 ALMDFYGNCGDLSSSINVFDSMSEKD---VVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKpDLISWNALVSGFARYGE 284
Cdd:COG2956   47 ALGNLYRRRGEYDRAIRIHQKLLERDpdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPD-DAEALRLLAEIYEQEGD 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 285 TNTALTYLEAMQEEGlRPRVNSWNGVISGCVQNGYFKDALDVFINMLlfPENPNSVtvasilpacaglrdlglgRAVHAY 364
Cdd:COG2956  126 WEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKAL--KLDPDCA------------------RALLLL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 365 AlkcelctniyvegslvDMYSKCGQDDRAEEIFAKAEKKN---ITLWNEIIATYMNQGKNSWALEHFRsmQHHGLKPDVV 441
Cdd:COG2956  185 A----------------ELYLEQGDYEEAIAALERALEQDpdyLPALPRLAELYEKLGDPEEALELLR--KALELDPSDD 246

                        250       260
                 ....*....|....*....|....*....
gi 449458139 442 TYNTLLAGYAKNGQKVEAYELLSDMLQEN 470
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQLRRH 275
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 235-265 3.53e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.91  E-value: 3.53e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 449458139  235 VSWTALVSAYIEEGLLNEAMEVFHSMQSSGL 265
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 315-502 5.58e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 5.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 315 VQNGYFKDALDVFINMLlfPENPNSVTVASILpacAGL-RDLG-LGRAVHAYALKCELC---TNIYVEgsLVDMYSKCGQ 389
Cdd:COG2956   19 LLNGQPDKAIDLLEEAL--ELDPETVEAHLAL---GNLyRRRGeYDRAIRIHQKLLERDpdrAEALLE--LAQDYLKAGL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 390 DDRAEEIFAKAEK---KNITLWNEIIATYMNQGKNSWALEHFRSMQHhgLKPDVVTYNTLLAG-YAKNGQKVEAYELLSD 465
Cdd:COG2956   92 LDRAEELLEKLLEldpDDAEALRLLAEIYEQEGDWEKAIEVLERLLK--LGPENAHAYCELAElYLEQGDYDEAIEALEK 169

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 449458139 466 MLQENlvPNVISLNVLVSGFQQSGLNY-EALELCQTML 502
Cdd:COG2956  170 ALKLD--PDCARALLLLAELYLEQGDYeEAIAALERAL 205
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 441-471 5.76e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 5.76e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 449458139  441 VTYNTLLAGYAKNGQKVEAYELLSDMLQENL 471
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
384-470 1.41e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 1.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 384 YSKCGQDDRAEEIFAKAEK---KNITLWNEIIATYMNQGKNSWALEHFRSMQhhgLKPDVVTYNTLLAG-YAKNGQKVEA 459
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALEldpDNADALNNLGLLLLEQGRYDEAIALEKALK---LDPNNAEALLNLAElLLELGDYDEA 78

                         90
                 ....*....|.
gi 449458139 460 YELLSDMLQEN 470
Cdd:COG3063   79 LAYLERALELD 89
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 587-621 1.48e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.36  E-value: 1.48e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 449458139  587 VCWNALIAGLLRTMQHKMAVELFCQMLVEGIKPSS 621
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 135-167 1.91e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 1.91e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 449458139  135 AYAALIRAYCRSEKWNELFAAFRSMVDEGILPD 167
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 394-453 1.96e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 1.96e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139  394 EEIFAKAEKKNITLWNEIIATYMNQGKNSWALEHFRSMQHHGLKPDVVTYNTLLAGYAKN 453
Cdd:pfam13812   4 REMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 231-279 2.45e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.65  E-value: 2.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 449458139  231 EKDVVSWTALVSAYIEEGLLNEAMEVFHSMQSSGLKPDLISWNALVSGF 279
Cdd:pfam13812  12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 267-314 1.51e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.96  E-value: 1.51e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 449458139  267 PDLISWNALVSGFARYGETNTALTYLEAMQEEGLRPRVNSWNGVISGC 314
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 233-260 1.92e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.17  E-value: 1.92e-03
                          10        20
                  ....*....|....*....|....*...
gi 449458139  233 DVVSWTALVSAYIEEGLLNEAMEVFHSM 260
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 350-470 2.13e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449458139 350 AGLRDLGLGRAVHAYALKCELCTNIYVEGSLVDMYSKCGQDDRAEEIFAKA---EKKNITLWNEIIATYMNQGKNSWALE 426
Cdd:COG5010   30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAlqlDPNNPELYYNLALLYSRSGDKDEAKE 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 449458139 427 HFRSMQHhgLKP-DVVTYNTLLAGYAKNGQKVEAYELLSDMLQEN 470
Cdd:COG5010  110 YYEKALA--LSPdNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 135-180 2.29e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.57  E-value: 2.29e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 449458139  135 AYAALIRAYCRSEKWNELFAAFRSMVDEGILPDKYLVPTILKACSR 180
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 587-617 2.34e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 2.34e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 449458139  587 VCWNALIAGLLRTMQHKMAVELFCQMLVEGI 617
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 304-350 3.33e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.80  E-value: 3.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 449458139  304 VNSWNGVISGCVQNGYFKDALDVFINMLLFPENPNSVTVASILPACA 350
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 270-302 6.11e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 6.11e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 449458139  270 ISWNALVSGFARYGETNTALTYLEAMQEEGLRP 302
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 306-331 7.76e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.36  E-value: 7.76e-03
                          10        20
                  ....*....|....*....|....*.
gi 449458139  306 SWNGVISGCVQNGYFKDALDVFINML 331
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMK 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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