NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|449437212|ref|XP_004136386|]
View 

HVA22-like protein i [Cucumis sativus]

Protein Classification

HVA22/TB2/DP1 family protein( domain architecture ID 10504231)

HVA22/TB2/DP1 family protein such as receptor expression enhancing proteins (REEPs), which are membrane shaping adapter proteins that modulate specific G protein-coupled receptor trafficking by affecting ER cargo capacity

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 19-97 1.36e-32

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


:

Pssm-ID: 460820  Cd Length: 77  Bit Score: 115.68  E-value: 1.36e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 449437212   19 PAYECYKTVEmnKPEIEQLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFFRPY 97
Cdd:pfam03134   1 PAYASYKALE--SPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVLPQTQGATYIYEKFLRPF 77
 
Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 19-97 1.36e-32

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


Pssm-ID: 460820  Cd Length: 77  Bit Score: 115.68  E-value: 1.36e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 449437212   19 PAYECYKTVEmnKPEIEQLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFFRPY 97
Cdd:pfam03134   1 PAYASYKALE--SPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVLPQTQGATYIYEKFLRPF 77
YOP1 COG5052
Protein involved in membrane traffic [Intracellular trafficking and secretion];
15-101 2.65e-10

Protein involved in membrane traffic [Intracellular trafficking and secretion];


Pssm-ID: 227385  Cd Length: 186  Bit Score: 58.66  E-value: 2.65e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449437212  15 GYAYPAYECYKTVEMNKPEIEqlRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFF 94
Cdd:COG5052   67 GFSLPAQLSLVAFYTLNFMDD--TQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIYDDII 144


                 ....*..
gi 449437212  95 RPYVAKH 101
Cdd:COG5052  145 APDVSDH 151
 
Name Accession Description Interval E-value
TB2_DP1_HVA22 pfam03134
TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It ...
 19-97 1.36e-32

TB2/DP1, HVA22 family; This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein.


Pssm-ID: 460820  Cd Length: 77  Bit Score: 115.68  E-value: 1.36e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 449437212   19 PAYECYKTVEmnKPEIEQLRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFFRPY 97
Cdd:pfam03134   1 PAYASYKALE--SPDKDDDTQWLTYWVVFGFFTLVESFADFLLSWIPFYYEFKLLFLLWLVLPQTQGATYIYEKFLRPF 77
YOP1 COG5052
Protein involved in membrane traffic [Intracellular trafficking and secretion];
15-101 2.65e-10

Protein involved in membrane traffic [Intracellular trafficking and secretion];


Pssm-ID: 227385  Cd Length: 186  Bit Score: 58.66  E-value: 2.65e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449437212  15 GYAYPAYECYKTVEMNKPEIEqlRFWCQYWILVAVLTVCERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFF 94
Cdd:COG5052   67 GFSLPAQLSLVAFYTLNFMDD--TQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIYDDII 144


                 ....*..
gi 449437212  95 RPYVAKH 101
Cdd:COG5052  145 APDVSDH 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH