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Conserved domains on  [gi|448936773|gb|AGE60319|]
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hypothetical protein [Pelagibacter phage HTVC010P]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6378 super family cl45293
Domain of unknown function (DUF6378); This domain of unknown function is found in proteins ...
 5-59 2.32e-04

Domain of unknown function (DUF6378); This domain of unknown function is found in proteins from bacteria and phages which are functionally uncharacterized. This domain is about 100 amino acids in length. It contains two conserved sequence motifs, KxxR and DxxxDxxGY.


The actual alignment was detected with superfamily member pfam19905:

Pssm-ID: 466228  Cd Length: 81  Bit Score: 35.27  E-value: 2.32e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 448936773   5 ELTNEIKKKIIQDREKDYGDYQYNFTILAELFTLILAPNLK-----------KTKAISSGTYHDDT 59
Cdd:pfam19905  1 EILDEAKELINGDRQDDYGDPEESFARIARLWSVYLGVEITaedvalmmallKLARLAGGPDHADS 66
 
Name Accession Description Interval E-value
DUF6378 pfam19905
Domain of unknown function (DUF6378); This domain of unknown function is found in proteins ...
 5-59 2.32e-04

Domain of unknown function (DUF6378); This domain of unknown function is found in proteins from bacteria and phages which are functionally uncharacterized. This domain is about 100 amino acids in length. It contains two conserved sequence motifs, KxxR and DxxxDxxGY.


Pssm-ID: 466228  Cd Length: 81  Bit Score: 35.27  E-value: 2.32e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 448936773   5 ELTNEIKKKIIQDREKDYGDYQYNFTILAELFTLILAPNLK-----------KTKAISSGTYHDDT 59
Cdd:pfam19905  1 EILDEAKELINGDRQDDYGDPEESFARIARLWSVYLGVEITaedvalmmallKLARLAGGPDHADS 66
 
Name Accession Description Interval E-value
DUF6378 pfam19905
Domain of unknown function (DUF6378); This domain of unknown function is found in proteins ...
 5-59 2.32e-04

Domain of unknown function (DUF6378); This domain of unknown function is found in proteins from bacteria and phages which are functionally uncharacterized. This domain is about 100 amino acids in length. It contains two conserved sequence motifs, KxxR and DxxxDxxGY.


Pssm-ID: 466228  Cd Length: 81  Bit Score: 35.27  E-value: 2.32e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 448936773   5 ELTNEIKKKIIQDREKDYGDYQYNFTILAELFTLILAPNLK-----------KTKAISSGTYHDDT 59
Cdd:pfam19905  1 EILDEAKELINGDRQDDYGDPEESFARIARLWSVYLGVEITaedvalmmallKLARLAGGPDHADS 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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