|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-615 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 658.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 8 WKYVMLIVVIVIGLLYALPNLFGedpavqitgargvaaseqtliqvqktlqeekitaksvaleegailarfdstdtqlra 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 88 realmgvmgdkyvvalNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTt 167
Cdd:PRK05812 24 ----------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYG- 86
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 168 vrkennyGLSITFRDAKARDEAIAYLSKRhpdlvissqgsnqlrAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPV 247
Cdd:PRK05812 87 -------GVEITFRDAEDRDKAIALLRKL---------------SSLTEAELKEITEEALEQAIEIIRNRVNELGVAEPV 144
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 248 VQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVntnvdqaaaasgrvpgdsevkqtregqpvvlykRVILTGDHIT 327
Cdd:PRK05812 145 IQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------------PVILTGDDIT 191
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 328 DSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFveykdsgkkdangravlvkQEEVINIANIQSRL-GNSF 406
Cdd:PRK05812 192 DASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL-------------------DGEVISAPVIQSAItGGSA 252
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 407 RITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIAN 486
Cdd:PRK05812 253 QITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVAN 332
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 487 LILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII 566
Cdd:PRK05812 333 LVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAII 411
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 446857567 567 LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG-GKRVKKLSI 615
Cdd:PRK05812 412 LYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
99-615 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 552.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 99 YVVALNLapatprWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKlqeqnidslrsdlrekgipyttvrkennyglsi 178
Cdd:COG0342 15 LVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALDE--------------------------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 179 tfrdakardeaiaylskrhpdlvissqgsnqlravmSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVV 258
Cdd:COG0342 56 ------------------------------------DGDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVV 99
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 259 ELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAasgrVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD-EYN 337
Cdd:COG0342 100 ELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDqQTG 175
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 338 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEykdsgkkdangravlvkqeEVINIANIQSRL-GNSFRITGINNPSE 416
Cdd:COG0342 176 QPVVSFTLDSEGAKKFADATRENVGKPLAIVLDG-------------------EVISAPVIQEPItGGSAQITGSFTVEE 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 417 ARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSL 496
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 497 LpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIK 576
Cdd:COG0342 317 L-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVK 395
|
490 500 510
....*....|....*....|....*....|....*....
gi 446857567 577 GFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-601 |
2.15e-179 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 513.37 E-value: 2.15e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 123 LGLDLRGGVHFLMEVDMDTALgklqeqnidslrsdlrekgipyttvrkennyglsitfrdakardeaiaylskrhpdlvi 202
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAV----------------------------------------------------------- 21
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 203 ssqgsnqlRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFR 282
Cdd:TIGR01129 22 --------VLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFR 93
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 283 LVNTN-VDQAAAASGRVPGDSEVKQTREGQP--VVLYKRVILTGDHITDSTSSQDEYN-QPQVNISLDSAGGNIMSNFTK 358
Cdd:TIGR01129 94 LVDDEsTSPDDALAGNVPAGSELLDSRSGDPkyYLLKKSPVLTGDHITDATSSVDQRSgQPVVSFSLDSEGARIFGDFTQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 359 DNIGKPMATLFVEYkdsgkkdangravlvkqeeVINIANIQSRL-GNSFRITGINNPSEARQLSLLLRAGALIAPIQIVE 437
Cdd:TIGR01129 174 ANIGKRLAIVLDNK-------------------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILE 234
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 438 ERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVA 517
Cdd:TIGR01129 235 ERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMA 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 518 VDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGT 597
Cdd:TIGR01129 314 VDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
|
....
gi 446857567 598 RAIV 601
Cdd:TIGR01129 394 RLLL 397
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-103 |
5.04e-48 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 163.07 E-value: 5.04e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 2 LNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARG-VAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDS 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGgAKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|...
gi 446857567 81 TDTQLRAREALMGVMGDKYVVAL 103
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDDYVVAL 103
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
462-612 |
8.13e-13 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 71.73 E-value: 8.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 462 LVSILFMIIFYKKFGLIATsaLIANLILIVGIMSL-LPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELS-NGRTVQ 539
Cdd:NF037998 456 IAIMIYLLFAYRLLGLFAI--IIALTSISLTLYSPtWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYkNKRSIE 533
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446857567 540 QAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612
Cdd:NF037998 534 ESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
433-593 |
1.41e-12 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 66.48 E-value: 1.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 433 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFM-IIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIV 511
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVgLRFEWRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 512 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAIT----TGIG 585
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLrkKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLAllvgVIVG 171
|
....*...
gi 446857567 586 VATSMFTA 593
Cdd:pfam02355 172 TYSSIFIA 179
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-124 |
1.01e-06 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 48.08 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 1 MLNRYPLWKYvmLIVVIVIGLLYALPNLFGEDPAVQITgargvaASEQTL-----IQVQKTLQEEKITAKSVALEEGAIL 75
Cdd:PRK10629 6 MSLRQLAWLG--AVLLLLAALLLAWSALRQQESTLAIR------AVHQGAslpdgFYVYQHLDANGIHIKSITPENDSLL 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 446857567 76 ARFDSTDTQLRAREALMGVMGDKYVVAL-NLAPATPRWLAAIHAEPMKLG 124
Cdd:PRK10629 78 IRFDSPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
8-615 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 658.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 8 WKYVMLIVVIVIGLLYALPNLFGedpavqitgargvaaseqtliqvqktlqeekitaksvaleegailarfdstdtqlra 87
Cdd:PRK05812 1 WKYLLILLVLLIGLLYALPNLRG--------------------------------------------------------- 23
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 88 realmgvmgdkyvvalNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTt 167
Cdd:PRK05812 24 ----------------ALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYG- 86
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 168 vrkennyGLSITFRDAKARDEAIAYLSKRhpdlvissqgsnqlrAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPV 247
Cdd:PRK05812 87 -------GVEITFRDAEDRDKAIALLRKL---------------SSLTEAELKEITEEALEQAIEIIRNRVNELGVAEPV 144
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 248 VQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVntnvdqaaaasgrvpgdsevkqtregqpvvlykRVILTGDHIT 327
Cdd:PRK05812 145 IQRQGADRIVVELPGVQDTARAKEILGKTATLEFRLV---------------------------------PVILTGDDIT 191
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 328 DSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFveykdsgkkdangravlvkQEEVINIANIQSRL-GNSF 406
Cdd:PRK05812 192 DASASFDQQGQPVVNITLDSEGAKKFADITKANIGKRMAIVL-------------------DGEVISAPVIQSAItGGSA 252
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 407 RITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIAN 486
Cdd:PRK05812 253 QITGNFTAEEARDLALLLRAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVAN 332
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 487 LILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII 566
Cdd:PRK05812 333 LVLILAVLSLL-GATLTLPGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAII 411
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 446857567 567 LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG-GKRVKKLSI 615
Cdd:PRK05812 412 LYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNLLYGrRKRLKKLSI 461
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
2-606 |
0e+00 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 630.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 2 LNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLiqvQKTLQEEKITAKSVALEEGAILARFDST 81
Cdd:PRK12933 10 LNHYSAWKYVVLIVTIIILLLSAIPTWYGEDAAVQVSAKAGLLLNVVEL---RQLLQAQGINVKRIDQKEGKTLIVLDDD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 82 DTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREK 161
Cdd:PRK12933 87 SQQSQAKTLLSSMVKEPKELTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVDSVRQFLREQ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 162 GIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQL 241
Cdd:PRK12933 167 RIRGVSVRLDDSDQLAVTTPDNDARSAVRQFIQQNYPGWQVTNSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRIEEL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 242 GVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFrlvnTNVDQAAAASgrvpgdSEVKQTREGQPVVLYKRVIL 321
Cdd:PRK12933 247 GITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAF----YEVKESGSVN------AKVLKDKNGRPVYVARRPVL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 322 TGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKdsgkKDANGRAVlvKQEEVINIANIQSR 401
Cdd:PRK12933 317 GGEHIVDARASLGEMGMAEVNISLDRAGGKKMSDFSRDNIGKPMATSYSEYS----RDEQGKTK--QSEEVISVATIQSQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 402 LGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATS 481
Cdd:PRK12933 391 LGDRFRITGAGSYQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRLGWVANV 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 482 ALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTL 561
Cdd:PRK12933 471 ALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTM 550
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 446857567 562 IKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG 606
Cdd:PRK12933 551 ITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYG 595
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
99-615 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 552.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 99 YVVALNLapatprWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKlqeqnidslrsdlrekgipyttvrkennyglsi 178
Cdd:COG0342 15 LVVALSL------VAPNGPAKPIKLGLDLQGGVHLLLEVDTDAALDE--------------------------------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 179 tfrdakardeaiaylskrhpdlvissqgsnqlravmSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVV 258
Cdd:COG0342 56 ------------------------------------DGDGIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDRIVV 99
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 259 ELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAasgrVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD-EYN 337
Cdd:COG0342 100 ELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAA----VPAGSELLPCRDGQPYLLLGPVVLTGDDLTDASAGFDqQTG 175
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 338 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEykdsgkkdangravlvkqeEVINIANIQSRL-GNSFRITGINNPSE 416
Cdd:COG0342 176 QPVVSFTLDSEGAKKFADATRENVGKPLAIVLDG-------------------EVISAPVIQEPItGGSAQITGSFTVEE 236
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 417 ARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSL 496
Cdd:COG0342 237 AQDLALLLRAGALPAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSL 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 497 LpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIK 576
Cdd:COG0342 317 L-GATLTLPGIAGIILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVK 395
|
490 500 510
....*....|....*....|....*....|....*....
gi 446857567 577 GFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615
Cdd:COG0342 396 GFAVTLILGILISMFTAVPVTRPLLNLLLGRRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
123-601 |
2.15e-179 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 513.37 E-value: 2.15e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 123 LGLDLRGGVHFLMEVDMDTALgklqeqnidslrsdlrekgipyttvrkennyglsitfrdakardeaiaylskrhpdlvi 202
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAV----------------------------------------------------------- 21
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 203 ssqgsnqlRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFR 282
Cdd:TIGR01129 22 --------VLKLSEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATLEFR 93
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 283 LVNTN-VDQAAAASGRVPGDSEVKQTREGQP--VVLYKRVILTGDHITDSTSSQDEYN-QPQVNISLDSAGGNIMSNFTK 358
Cdd:TIGR01129 94 LVDDEsTSPDDALAGNVPAGSELLDSRSGDPkyYLLKKSPVLTGDHITDATSSVDQRSgQPVVSFSLDSEGARIFGDFTQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 359 DNIGKPMATLFVEYkdsgkkdangravlvkqeeVINIANIQSRL-GNSFRITGINNPSEARQLSLLLRAGALIAPIQIVE 437
Cdd:TIGR01129 174 ANIGKRLAIVLDNK-------------------VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILE 234
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 438 ERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVA 517
Cdd:TIGR01129 235 ERTIGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAF-GATLTLPGIAGLILTIGMA 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 518 VDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGT 597
Cdd:TIGR01129 314 VDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFT 393
|
....
gi 446857567 598 RAIV 601
Cdd:TIGR01129 394 RLLL 397
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
226-604 |
3.48e-123 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 381.50 E-value: 3.48e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 226 AVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPgdsevk 305
Cdd:PRK13024 60 ALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPPPGVGGPVVGP------ 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 306 qtREGQPVVLYKRVILTGDHITDSTSSQDEY--NQPQVNISLDSAGGNIMSNFTKDNIGKPmatlfveykdsgkkDANGR 383
Cdd:PRK13024 134 --DEGKDTAVLNPVLLSGDDLTDAGAKFDQDqtNRPSVSLKLKSEGAKKWAKVTEKNSKKG--------------PPNNR 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 384 AVLVKQEEVINIANIQS-RLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLL 462
Cdd:PRK13024 198 IAIVLDPKVISAPTVNQpINGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 463 VSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAI 542
Cdd:PRK13024 278 LIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSL-GAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAF 356
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446857567 543 DEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604
Cdd:PRK13024 357 KKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELL 418
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
110-613 |
4.10e-116 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 365.97 E-value: 4.10e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 110 PRWLAAihaEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVrKENNYGLSITFRDAKARDEA 189
Cdd:PRK14726 37 PSWLPH---RQVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTGL-TGNGQTVQVRITDPAQTQAA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 190 IAYL-------------SKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRI 256
Cdd:PRK14726 113 VDALkpltapvsagglgGSSIQELTLQEGGEGQLRLQLTDAGIDYRVSSALTQSIEVVRRRVAELGTTEPLIRRQGDDRI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 257 VVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPV--VLYKRVILTGDHITDSTSSQD 334
Cdd:PRK14726 193 VVQVPGLVDPQRLKNLLNQPAKLSFRLVDSSMPAQEALNGRPPATSEVLYSLDDPPVpyLVERRAFVSGENLVDAQPVFD 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 335 EYNQ-PQVNISLDSAGGNIMSNFTKDNIGKPMAtlfveykdsgkkdangravLVKQEEVINIANIQSR-LGNSFRITGIN 412
Cdd:PRK14726 273 PQTNePVVTFRLDAEGTQRFAQATQQNVGKHFA-------------------IVLDGQVISAPVIDEAiTGGEGRISGNF 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 413 NPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVG 492
Cdd:PRK14726 334 SEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVLIIA 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 493 IMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGT 572
Cdd:PRK14726 414 VLSLL-GATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGS 492
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 446857567 573 GAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKL 613
Cdd:PRK14726 493 GAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRRRRPKHL 533
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
227-601 |
3.37e-57 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 205.62 E-value: 3.37e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 227 VQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQ 306
Cdd:PRK13023 69 LETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADSEIVY 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 307 TREGQPV--VLYKRVILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMAtlfveykdsgkkdangr 383
Cdd:PRK13023 149 SFDDPPVgyLLKKTPILTGHDITDAKASiSADDGQPVITLTLDDNGRRRLADLTAQGNENSFA----------------- 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 384 avLVKQEEVINIANIQSRLG-NSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLL 462
Cdd:PRK13023 212 --IVVDNQVVSAPTVSGPLDtSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAAL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 463 VSILFMIIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAI 542
Cdd:PRK13023 290 VVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI-GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAM 368
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 446857567 543 DEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIV 601
Cdd:PRK13023 369 ESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
439-594 |
2.10e-53 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 180.92 E-value: 2.10e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 439 RTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIAN-LILIVGIMSLLpGATLSMPGIAGIVLTLAVA 517
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLF-GATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446857567 518 VDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI 594
Cdd:TIGR00916 114 VDDTVVIFDRIREELrkYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
2-103 |
5.04e-48 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 163.07 E-value: 5.04e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 2 LNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARG-VAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDS 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGgAKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|...
gi 446857567 81 TDTQLRAREALMGVMGDKYVVAL 103
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDDYVVAL 103
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
416-598 |
3.37e-41 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 160.79 E-value: 3.37e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 416 EARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMS 495
Cdd:PRK12911 874 EVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGIISVCLGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQ 953
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 496 LLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAI 575
Cdd:PRK12911 954 YL-DAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPI 1032
|
170 180
....*....|....*....|...
gi 446857567 576 KGFAITTGIGVATSMFTAIVGTR 598
Cdd:PRK12911 1033 KGFALTLIIGIFSSMFTALFMTK 1055
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
233-586 |
2.17e-28 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 117.67 E-value: 2.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 233 ILRNRVNQLGVAEPVVQRQGADRIVVELPGIqDTARAKEILGATATLEFRLVNTNVDQaaaasgrvpgdsevkqtregqp 312
Cdd:PRK08343 71 ILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGVFEARIQTPGNNN---------------------- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 313 vvlykRVILTGDHIT--DSTSSQDEYNQPQVNISLDSAGGNimsNFTKDNIGKPMATLFVEYKdsgkkdangrAVLVKQE 390
Cdd:PRK08343 128 -----ETVLTGDDIEsvGSPSQDPSGGAWGVPFTLSEDGAE---KFAEVAKGKGATDDPSGHP----------LDMYLDG 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 391 EVINIANIQSRLGNSFR-----------ITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLA 459
Cdd:PRK08343 190 ELIYAAPLSPDLASGLAsgpvvitvgstGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 460 GLLVsILFMIIF-YKK----FGLIATSalIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLI-NERIKEELS 533
Cdd:PRK08343 270 ALLA-VALVVFLrYREpriaLPMVITS--LSEVIIILGFAALI-GWQLDLASIAGIIAVIGTGVDDLIIItDEVLHEGKV 345
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 446857567 534 NGRTVQQAideGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGV 586
Cdd:PRK08343 346 PSRKVFLS---RIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGV 395
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
462-612 |
8.13e-13 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 71.73 E-value: 8.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 462 LVSILFMIIFYKKFGLIATsaLIANLILIVGIMSL-LPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELS-NGRTVQ 539
Cdd:NF037998 456 IAIMIYLLFAYRLLGLFAI--IIALTSISLTLYSPtWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYkNKRSIE 533
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446857567 540 QAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612
Cdd:NF037998 534 ESFKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVGVIISLVLVIIVARLMIWLTIKLQWFKK 606
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
458-612 |
1.14e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 71.04 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 458 LAGLLVSILFMIIFYKKF--GLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANV-LINeRIKEELSN 534
Cdd:COG1033 225 PLALLLILLLLFLFFRSLrgVLLPLLVVLLAVIWTLGLMGLL-GIPLSPLTILVPPLLLAIGIDYGIhLLN-RYREERRK 302
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446857567 535 GRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIvnLLYGGKRVKK 612
Cdd:COG1033 303 GLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTLLPAL--LSLLPRPKPK 378
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
433-593 |
1.41e-12 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 66.48 E-value: 1.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 433 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFM-IIFYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIV 511
Cdd:pfam02355 13 AEIISIETVGPTVGSELARKAVLALLFALLLILIYVgLRFEWRFALGAIIALAHDVIITVGVFSLF-GIEVDLATVAALL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 512 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAIT----TGIG 585
Cdd:pfam02355 92 TIIGYSVNDTVVVFDRVRENLrkKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDFSLAllvgVIVG 171
|
....*...
gi 446857567 586 VATSMFTA 593
Cdd:pfam02355 172 TYSSIFIA 179
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
458-612 |
8.58e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 68.35 E-value: 8.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 458 LAGLLVSILFMIIFYKKF--GLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNG 535
Cdd:COG1033 612 LLALLLIFLLLLLAFRSLrlGLISLIPNLLPILLTFGLMGLL-GIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKG 690
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446857567 536 RTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612
Cdd:COG1033 691 GDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPPLADFGLLLALGLLVALLAALLLLPALLLLLDPRIAKKR 767
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
433-597 |
3.79e-11 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 64.49 E-value: 3.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 433 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMII-FYKKFGLIATSALIANLILIVGIMSLLPgATLSMPGIAGIV 511
Cdd:PRK13021 108 VQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYrFEWRLASGALFALVHDVIFVLAFFALTQ-MEFNLTVLAAVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 512 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATS 589
Cdd:PRK13021 187 AILGYSLNDSIIIADRIRELLiaKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTG 266
|
....*....
gi 446857567 590 MFTAI-VGT 597
Cdd:PRK13021 267 TFSSIsVGT 275
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
433-593 |
2.18e-10 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 61.52 E-value: 2.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 433 IQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIV 511
Cdd:TIGR00966 80 AEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEwRFALGAIVALVHDVIITVGVYSLF-GIEVNLTTVAALL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 512 LTLAVAVDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFA----ITTGIG 585
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLrkYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSlallVGVIVG 238
|
....*...
gi 446857567 586 VATSMFTA 593
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
382-597 |
5.92e-09 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 57.75 E-value: 5.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 382 GRAVLVKQEEVINIANIQSRL---------------GNSFRI-TGINNPSEARQLSLLLRA-GALIAPIQIVEERTIGPT 444
Cdd:COG0341 47 GTLIEVSFEQPVDLEEVREALeeaglgdasvqtfgsDNDVLIrTPPLDGESAEEVEKVRAAlKEAFGDVEIVRVEFVGPT 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 445 LGMQNIEQGLEAclagLLVSILFMII-----FYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIvltLAVA-- 517
Cdd:COG0341 127 VGKELTRKALLA----LLVALIGILIyiafrFEWRFAVGAVVALLHDVLITLGIFSLF-GLEFDLTFIAAL---LTIIgy 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 518 -VDANVLINERIKEEL--SNGRTVQQAIDEGYRGAFS-SIFDAnITTLIKVIILYAVGTGAIKGFAITTGIGVatsmfta 593
Cdd:COG0341 199 sLNDTVVVFDRIRENLrkYRKMTLAEIINLSINQTLSrTINTS-LTTLLVVLALLFFGGETLRDFALALLIGI------- 270
|
....
gi 446857567 594 IVGT 597
Cdd:COG0341 271 IVGT 274
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
458-615 |
3.90e-08 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 56.31 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 458 LAGLLVSILFMIIFYKkfGLIAT-----SALIAnLILIVGIMSLLpGATLSMPGIAGIVLT---LAVAVDANVLINERIK 529
Cdd:COG2409 176 LITLPVALVVLLLVFR--SLVAAllpllTAGLA-VGVALGLLALL-AAFTDVSSFAPNLLTmlgLGVGIDYALFLVSRYR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 530 EELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLygGKR 609
Cdd:COG2409 252 EELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAVAVLAALTLLPALLALL--GRR 329
|
....*.
gi 446857567 610 VKKLSI 615
Cdd:COG2409 330 VFWPRR 335
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
403-570 |
1.03e-07 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 53.78 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 403 GNSFRIT-GINNPSEARQLSLLLRAGALIAPIQIVE--ERTIGPTLGMQNIEQGLEA-CLAGLLVSILFMIIFyKKF--- 475
Cdd:PRK08578 83 GNGYIITfGSGDDTDVDKLADAVKEFFNVDSISELNysEKQIGPTFGSQFQEQALKAvGFAFIGMAVVVFLIF-RTPvps 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 476 GLIATSALiANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNgrtvqqaIDEGYRGAFSSIFD 555
Cdd:PRK08578 162 LAVILSAF-SDIIIALALMNLF-GIELSLATVAALLMLIGYSVDSDILLTTRVLKRRGT-------FDESIKRAMRTGIT 232
|
170
....*....|....*
gi 446857567 556 ANITTLIKVIILYAV 570
Cdd:PRK08578 233 MTLTTIAAMAVLYIV 247
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
449-603 |
3.29e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 53.30 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 449 NIEQGLEACLAGLLVSILFMIIFYKK----FGLIATSALIANLILIVGIMsllpGATLSMPGIAGIVLTLAVAVDANVLI 524
Cdd:TIGR00921 566 NEGMRRMTIAGAILVLMILLAVFRNPikavFPLIAIGSGILWAIGLMGLR----GIPSFLAMATTISIILGLGMDYSIHL 641
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446857567 525 NERIKEELsNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNL 603
Cdd:TIGR00921 642 AERYFEER-KEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALLVL 719
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
440-615 |
4.48e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 52.92 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 440 TIGPTLGMQnIEQGLEACLAGL--LVSILFMIIFYKKF-----GLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVL 512
Cdd:TIGR00921 178 TGSPAINYD-IEREFGKDMGTTmaISGILVVLVLLLDFkrwwrPLLPLVIILFGVAWVLGIMGWL-GIPLYATTLLAVPM 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 513 TLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFT 592
Cdd:TIGR00921 256 LIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLL 335
|
170 180
....*....|....*....|...
gi 446857567 593 AIVGTRAIVNLLYGGKRVKKLSI 615
Cdd:TIGR00921 336 TLLVLPALLQSIDIGREKVKKEI 358
|
|
| PRK10629 |
PRK10629 |
EnvZ/OmpR regulon moderator MzrA; |
1-124 |
1.01e-06 |
|
EnvZ/OmpR regulon moderator MzrA;
Pssm-ID: 236728 Cd Length: 127 Bit Score: 48.08 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 1 MLNRYPLWKYvmLIVVIVIGLLYALPNLFGEDPAVQITgargvaASEQTL-----IQVQKTLQEEKITAKSVALEEGAIL 75
Cdd:PRK10629 6 MSLRQLAWLG--AVLLLLAALLLAWSALRQQESTLAIR------AVHQGAslpdgFYVYQHLDANGIHIKSITPENDSLL 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 446857567 76 ARFDSTDTQLRAREALMGVMGDKYVVAL-NLAPATPRWLAAIHAEPMKLG 124
Cdd:PRK10629 78 IRFDSPEQSAAAKEVLDRTLPHGYIIAQqDDNSQAMQWLTRLRDNSHRLG 127
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
475-611 |
1.59e-06 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 50.37 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 475 FGLIATSALIANLILIVGImsllpGATLSMPGIAGIVLtLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIF 554
Cdd:pfam03176 178 LSLGAAQGLVAILAHILGI-----GLSTFALNLLVVLL-IAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVT 251
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 446857567 555 DANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIvnLLYGGKRVK 611
Cdd:pfam03176 252 AAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLVDVLAALTLLPAL--LALLGRWGL 306
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
405-612 |
1.23e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 45.22 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 405 SFRITGINNPSEARQLSLLLRAGALIA---PIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIAT 480
Cdd:PRK13024 528 LVRTYGILSDDEEADTEIVAKLKNALKndkGGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEwTFSLGAI 607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 481 SALIANLILIVGIMSLLpGATLSMPGIAGIvLTLaVAVDAN--VLINERIKEEL--SNGRTVQQAIDEGYRGAFSSIFDA 556
Cdd:PRK13024 608 LALLHDVLIVIGFFSLF-RLEVDLTFIAAI-LTI-IGYSINdtVVVFDRIRENLrlYKKKDLREIVNKSINQTLSRTINT 684
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446857567 557 NITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI-VGTRAIVNLlyGGKRVKK 612
Cdd:PRK13024 685 SLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIfIAAPLWLDL--EKRRLKK 739
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
461-603 |
2.02e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 44.58 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 461 LLVSILFMIIFYKKF--GLIATSALIANLILIVGIMSLLP---GATLSMPGIAGIV-LTLAVAVDANVLINERIKEELSN 534
Cdd:TIGR00833 183 GIIVLIILLLVYRSPitMLVPLVSVGFSVVVAQGIVSLLGipgLIGVNAQTTVLLTaLVIGAGTDYAVFLTGRYHEERRK 262
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446857567 535 GRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNL 603
Cdd:TIGR00833 263 GESLEEAAAEALRGTGKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTL 331
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
465-606 |
9.00e-04 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 42.26 E-value: 9.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 465 ILFMIIFYKKFGLIATSALIANLIL----IVGIMSLL------PGATLSMPGIAGIVLtLAVAVDANVLINERIKEELSN 534
Cdd:TIGR00833 756 IVFMILALLLRAPVAPIVLIGSVALsylwALGLSVLAfqhilgAELHWSVLAGVFVLL-VALGVDYNMLLVSRIKEESPA 834
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446857567 535 GrtVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYG 606
Cdd:TIGR00833 835 G--NRTGIIRALGSTGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLG 904
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
120-140 |
2.39e-03 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 35.73 E-value: 2.39e-03
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
393-594 |
3.59e-03 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 40.47 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 393 INIANIQ-SRLGNS----FRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILF 467
Cdd:PRK14726 609 LNLGEVQvERFGSPrdalIRIASQDGGENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIY 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 468 MII-FYKKFGLIATSALIANLILIVGIMSLLpGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRT--VQQAIDE 544
Cdd:PRK14726 689 IWIrFEWQFAVGAIIATLHDVILTLGLFVLT-GIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKmpLPILIDA 767
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446857567 545 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI 594
Cdd:PRK14726 768 SINQTLSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSI 817
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
441-594 |
7.42e-03 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 39.22 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446857567 441 IGPTLGMQNIEQGLEACLAGLLVsiLFMIIFYKKFGLIATSALIANL--ILIVGIMSLLPGATLSMPGIAGIVLTLAVAV 518
Cdd:PRK13023 568 VGPTVSEQLSRAGVLAVILSLIG--IFIYVWFRFRWQLALGAVLSTLhdVVILSGMFIVFRMEFNLWSVAAILTIIGYSL 645
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446857567 519 DANVLINERIKEELSNGRT--VQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI 594
Cdd:PRK13023 646 NDTVVIYDRVRENLRRYKSapLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSI 723
|
|
| |
