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Conserved domains on  [gi|446855438|ref|WP_000932694|]
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MULTISPECIES: single-stranded DNA-binding protein [Staphylococcus]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-109 6.61e-35

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 116.86  E-value: 6.61e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQIFEKED-RKIATFCVATHRNYKDENGEIV--CDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRS 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSgTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 446855438  79 RKY-DKDGQTHFVTELYVETIKFMSPKSQNNE 109
Cdd:COG0629   81 RSWeDKDGQKRYTTEVVADEIQFLGSRPSGGG 112
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-109 6.61e-35

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 116.86  E-value: 6.61e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQIFEKED-RKIATFCVATHRNYKDENGEIV--CDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRS 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSgTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 446855438  79 RKY-DKDGQTHFVTELYVETIKFMSPKSQNNE 109
Cdd:COG0629   81 RSWeDKDGQKRYTTEVVADEIQFLGSRPSGGG 112
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-101 2.45e-32

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 109.63  E-value: 2.45e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438    2 LNKIVIVGRLTKDAQIFEKE-DRKIATFCVATHRNYKD-ENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSR 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPnGNAVANFTLATNRRFKDrGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 446855438   80 KY-DKDGQTHFVTELYVETIKFM 101
Cdd:pfam00436  81 KYeDQEGQKRYVTEIVADEVQFL 103
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-106 1.46e-24

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 90.97  E-value: 1.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   1 MLNKIVIVGRLTKDAQIFEK-EDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSR 79
Cdd:PRK07274   1 MYNKVILIGRLTATPELVKTaNDKSVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTR 80

                         90       100
                 ....*....|....*....|....*..
gi 446855438  80 KYDKDGQTHFVTELYVETIKFMSPKSQ 106
Cdd:PRK07274  81 KYEKDGQTHYVTEVLCQSFQLLESRAQ 107
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-100 8.78e-23

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 85.36  E-value: 8.78e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   5 IVIVGRLTKDAQIFEKED-RKIATFCVATHRNYKDEN-GEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRKY- 81
Cdd:cd04496    1 VILIGRLGKDPELRYTPSgTPVARFSLAVNRRRKDRDeEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWe 80

                         90
                 ....*....|....*....
gi 446855438  82 DKDGQTHFVTELYVETIKF 100
Cdd:cd04496   81 DKDGQKRYGTEVVADRIEF 99
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-109 9.69e-22

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 84.78  E-value: 9.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438    1 MLNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKDENGEIV--CDYLFCKAFGKLASNIEKYTNQGTLVGITGQMR 77
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELrYTPSGNAVANFTLATNRRWKDQDGEWKeeTEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 446855438   78 SRKY-DKDGQTHFVTELYVETIKFM---SPKSQNNE 109
Cdd:TIGR00621  83 TRKWeDQNGQKRSKTEIIADNVQLLdllGARAQGGE 118
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-109 6.61e-35

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 116.86  E-value: 6.61e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQIFEKED-RKIATFCVATHRNYKDENGEIV--CDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRS 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSgTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 446855438  79 RKY-DKDGQTHFVTELYVETIKFMSPKSQNNE 109
Cdd:COG0629   81 RSWeDKDGQKRYTTEVVADEIQFLGSRPSGGG 112
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-101 2.45e-32

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 109.63  E-value: 2.45e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438    2 LNKIVIVGRLTKDAQIFEKE-DRKIATFCVATHRNYKD-ENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSR 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPnGNAVANFTLATNRRFKDrGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 446855438   80 KY-DKDGQTHFVTELYVETIKFM 101
Cdd:pfam00436  81 KYeDQEGQKRYVTEIVADEVQFL 103
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-106 1.46e-24

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 90.97  E-value: 1.46e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   1 MLNKIVIVGRLTKDAQIFEK-EDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSR 79
Cdd:PRK07274   1 MYNKVILIGRLTATPELVKTaNDKSVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTR 80

                         90       100
                 ....*....|....*....|....*..
gi 446855438  80 KYDKDGQTHFVTELYVETIKFMSPKSQ 106
Cdd:PRK07274  81 KYEKDGQTHYVTEVLCQSFQLLESRAQ 107
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-106 9.79e-24

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 88.17  E-value: 9.79e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   1 MLNKIVIVGRLTKDAQIF-EKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSR 79
Cdd:PRK06752   1 MMNRVVLIGRLTKEPELYyTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR 80

                         90       100
                 ....*....|....*....|....*...
gi 446855438  80 KYDKD-GQTHFVTELYVETIKFMSPKSQ 106
Cdd:PRK06752  81 NYEDDqGKRIYITEVVIESITFLERRRE 108
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-105 4.08e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 88.02  E-value: 4.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   1 MLNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSR 79
Cdd:PRK07275   1 MINNVVLVGRMTRDAELrYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                         90       100
                 ....*....|....*....|....*..
gi 446855438  80 KYD-KDGQTHFVTELYVETIKFMSPKS 105
Cdd:PRK07275  81 NYEnQQGQRVYVTEVVADNFQMLESRA 107
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-100 8.78e-23

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 85.36  E-value: 8.78e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   5 IVIVGRLTKDAQIFEKED-RKIATFCVATHRNYKDEN-GEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRKY- 81
Cdd:cd04496    1 VILIGRLGKDPELRYTPSgTPVARFSLAVNRRRKDRDeEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWe 80

                         90
                 ....*....|....*....
gi 446855438  82 DKDGQTHFVTELYVETIKF 100
Cdd:cd04496   81 DKDGQKRYGTEVVADRIEF 99
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-109 1.56e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 87.16  E-value: 1.56e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   1 MLNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSR 79
Cdd:PRK06751   1 MMNRVILVGRLTKDPDLrYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446855438  80 KYD-KDGQTHFVTELYVETIKFMSPKSQNNE 109
Cdd:PRK06751  81 NYEgQDGKRVYVTEVLAESVQFLEPRNGGGE 111
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-109 9.69e-22

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 84.78  E-value: 9.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438    1 MLNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKDENGEIV--CDYLFCKAFGKLASNIEKYTNQGTLVGITGQMR 77
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELrYTPSGNAVANFTLATNRRWKDQDGEWKeeTEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 446855438   78 SRKY-DKDGQTHFVTELYVETIKFM---SPKSQNNE 109
Cdd:TIGR00621  83 TRKWeDQNGQKRSKTEIIADNVQLLdllGARAQGGE 118
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 2-101 6.80e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 67.06  E-value: 6.80e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKD-ENGEI--VCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMR 77
Cdd:PRK13732   6 INKVILVGRLGKDPEVrYIPNGGAVANLQVATSESWRDkQTGEMreQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85

                         90       100
                 ....*....|....*....|....
gi 446855438  78 SRKYDKDGQTHFVTELYVETIKFM 101
Cdd:PRK13732  86 TRSWEDNGITRYVTEILVKTTGTM 109
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 1-109 6.11e-12

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 59.47  E-value: 6.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   1 MLNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKDENGEI---VCdYLFCKAFGKLASNIEKYTNQGTLVGITGQM 76
Cdd:PRK08486   1 MFNKVILVGNLTRDVELrYLPSGSAIATIGLATSRRFKKQDGEKgeeVC-FIDIRLFGRTAEIANQYLSKGSKVLIEGRL 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446855438  77 RSRKY-DKDGQT---HFVTelyVETIKFMSPKSQNNE 109
Cdd:PRK08486  80 TFESWmDQNGQKrskHTIT---AESMQMLDSKSDNPQ 113
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 2-101 2.52e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 49.79  E-value: 2.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKDE-NGEI--VCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMR 77
Cdd:PRK06958   4 VNKVILVGNLGADPEVrYLPSGDAVANIRLATTDRYKDKaSGEFkeATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIR 83

                         90       100
                 ....*....|....*....|....*
gi 446855438  78 SRKY-DKDGQTHFVTELYVETIKFM 101
Cdd:PRK06958  84 TRKWqGQDGQDRYSTEIVADQMQML 108
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 2-93 2.83e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 49.42  E-value: 2.83e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQIFEKED-RKIATFCVATHRNYKDEN-GE----------IVCDYLFCKAfgklasnIEKYTNQGTL 69
Cdd:PRK06341   5 VNKVILIGNLGADPEIRRTQDgRPIANLRIATSETWRDRNsGErkektewhrvVIFNEGLCKV-------AEQYLKKGAK 77

                         90       100
                 ....*....|....*....|....*
gi 446855438  70 VGITGQMRSRKY-DKDGQTHFVTEL 93
Cdd:PRK06341  78 VYIEGQLQTRKWtDQSGVERYSTEV 102
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 2-108 1.58e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 47.65  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQIFEKED-RKIATFCVATHRNYKDEN-GEI--VCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMR 77
Cdd:PRK06863   4 INKVIIVGHLGNDPEIRTMPNgEAVANISVATSESWTDKNtGERreVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLK 83

                         90       100       110
                 ....*....|....*....|....*....|..
gi 446855438  78 SRKY-DKDGQTHFVTELYVETIKFMSPKSQNN 108
Cdd:PRK06863  84 TRKWqDQNGQDRYTTEIQGDVLQMLGGRNQRN 115
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 2-114 2.39e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 47.23  E-value: 2.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKD-ENGEIV--CDYLFCKAFGKLASNIEKYTNQGTLVGITGQMR 77
Cdd:PRK05733   5 VNKVILVGTCGQDPEVrYLPNGNAVTNLSLATSEQWTDkQSGQKVerTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQ 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 446855438  78 SRKYDKDGQTHFVTELYVE---TIKFMSPKSQNNEILSDS 114
Cdd:PRK05733  85 TREWEKDGIKRYTTEIVVDmqgTMQLLGGRPQGDDQGGQG 124
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 2-95 4.77e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 46.38  E-value: 4.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQI-FEKEDRKIATFCVATHRNYKD-ENGEI--VCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMR 77
Cdd:PRK09010   6 VNKVILVGNLGQDPEVrYMPNGGAVANITLATSESWRDkQTGEMkeQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLR 85

                         90
                 ....*....|....*....
gi 446855438  78 SRKY-DKDGQTHFVTELYV 95
Cdd:PRK09010  86 TRKWtDQSGQDRYTTEVVV 104
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 2-127 9.75e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 45.10  E-value: 9.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   2 LNKIVIVGRLTKDAQIFEK-EDRKIATFCVATHRNYKD-------ENGEIVCDYLFCKAfgkLASNIEKYTNQGTLVGIT 73
Cdd:PRK06642   5 LNKVILIGNVGRDPEIRTTgEGKKIINLSLATTETWKDritserkERTEWHRVVIFSEG---LVSVVERYVTKGSKLYIE 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446855438  74 GQMRSRKY-DKDGQTHFVTELYVETikfmspksqnneiLSDSILDIDSQNIDNHD 127
Cdd:PRK06642  82 GSLQTRKWnDNSGQEKYTTEVVLQN-------------FNSQLILLDSKNSNNHN 123
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 7-125 2.07e-06

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 44.51  E-value: 2.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   7 IVGRLTKDAQI-FEKEDRKIATFCVAT-HR-NYKDENgeIVCDylfCKAFGKLASNIEKYTNQGTLVGITGQMRSRKY-D 82
Cdd:PRK06293   6 IVGRLGADPEErMTSKGKRVVVLRLGVkSRvGSKDET--VWCR---CNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYvD 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 446855438  83 KDGQTHFVTELYVETIKFmSPKSQNNEILSDSILDIDSQNIDN 125
Cdd:PRK06293  81 KDGSPQSSLVVSVDTIKF-SPFGRNEGSRQPSAGEDEGQQRGY 122
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 5-98 3.23e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 35.78  E-value: 3.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855438   5 IVIVGRLTKDAQI-FEKEDRKIATFCVA-THRNYKDENGEIVcD----YLFCKAFGKLASNIEKYTNQGTLVGITGQMRS 78
Cdd:PRK07772   7 ITVVGNLTADPELrFTPSGAAVANFTVAsTPRTFDRQTNEWK-DgealFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQ 85

                         90       100
                 ....*....|....*....|.
gi 446855438  79 RKY-DKDGQTHFVTELYVETI 98
Cdd:PRK07772  86 RSYeTREGEKRTVVELEVDEI 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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