|
Name |
Accession |
Description |
Interval |
E-value |
| flhB |
PRK12773 |
flagellar biosynthesis protein FlhB; Reviewed |
1-646 |
0e+00 |
|
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 183737 Cd Length: 646 Bit Score: 1247.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 1 MKKAIWSRTKKLVVVFVQNPKRFFIRIFYKNLSRVPWVCESGKNSFVKSVLDVFYRFMLFGKRFGKFIFWKQYYDIVSDF 80
Cdd:PRK12773 1 MKKAIWSRTKKLVVVFVQNPKRFFIRIFYKNLSRVPWVCESGKDSFVKSVLDVFYRFMLFGKRFGKFIFWKQYYDIVSDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 81 SKKCESSHNLREIKNLMGVPTIYTRSKILWEFPQFTQDRKSCKSSYNLQNVVKSESNSDHFSNRNTVSLQNRQEGLVIKD 160
Cdd:PRK12773 81 SKKCESSHNLHEIKNLMGVPTIYTRSKILWEFPQFTQDRKSCKSSYNLQNVVKSESNSDHFSNRNTVSLQNRQEGLVIKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 161 VVHPTSFIFSFLHHFDRWGQKSTSHSLWMFRTIERFFSIIKKLFFKKKFSKSFIVGIFLFYKKIVKKFLGYSEPIDSKLT 240
Cdd:PRK12773 161 VVHPTSFIFSFLHHFDRWGQKSTSHSLWMFRTIERFFSIIKKLFFKKKFSKSFIVGIFLFYKKIVKKFLGYSEPIDSKLT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 241 EFLNSNLFRYFLQFGFINLTIEIVRRIFRFKIFPPNICLSTEAADFKIDLQLFAAEDEGRTEPGSERRRREEREKGNVPK 320
Cdd:PRK12773 241 EFLNSNLFCYFLQFGFINLTIEIVRRIFRFKIFPPNICLSTEAADFKIDLQLFAAEDEGRTEPGSERRRREEREKGNVPK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 321 SPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGN 400
Cdd:PRK12773 321 SPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 401 VAQVGFIFTPRALSFNFSRIRPNFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAVALVMNS 480
Cdd:PRK12773 401 VAQVGFIFTPRALSFNFSRIRPNFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAVALVMNS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 481 SFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMLAKVPEADVVIT 560
Cdd:PRK12773 481 SFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMLAKVPEADVVIT 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 561 NPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRLE 640
Cdd:PRK12773 561 NPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRLE 640
|
....*.
gi 446632016 641 SFRRAV 646
Cdd:PRK12773 641 SFRRAV 646
|
|
| FlhB |
COG1377 |
Flagellar biosynthesis protein FlhB [Cell motility]; |
315-644 |
3.91e-128 |
|
Flagellar biosynthesis protein FlhB [Cell motility];
Pssm-ID: 440987 Cd Length: 352 Bit Score: 381.77 E-value: 3.91e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGlRTDMSSESVTELLKNASTDLFTLLWPLLGITLV 394
Cdd:COG1377 24 KGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFAR-ALALDPADLLALLGALLLEALLALLPLLLVLAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 395 GAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQ 472
Cdd:COG1377 103 AALLANLLQGGFLFSTKALKPKFSRLNPisGLKRLF-SLRALVELLKSLLKLLLVGGVAYLVLRGELPELLALAALPLAA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 473 AVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRkMLAKV 552
Cdd:COG1377 182 ALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEVKGRIRQLQREMARRR-MMAAV 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 553 PEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAI 632
Cdd:COG1377 261 PKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARALYATVEVGQEIPEELYQAV 340
|
330
....*....|..
gi 446632016 633 ATILSRLESFRR 644
Cdd:COG1377 341 AEVLAYVYQLKR 352
|
|
| Bac_export_2 |
pfam01312 |
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ... |
315-636 |
3.34e-126 |
|
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Pssm-ID: 460157 Cd Length: 338 Bit Score: 376.40 E-value: 3.34e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTdmsSESVTELLKNASTDLFTLLWPLLGITLV 394
Cdd:pfam01312 17 KGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAAD---PAALLALLLALLLELLLLLLPLLLVLLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 395 GAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQ 472
Cdd:pfam01312 94 AALLANLLQVGFLFSTKALKPKFSKLNPisGLKRIF-SLRSLVELLKSLLKVAVVGAVAYLVLRGNLPELLALADLPLEA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 473 AVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRkMLAKV 552
Cdd:pfam01312 173 ALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQREMARRR-MMAEV 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 553 PEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAI 632
Cdd:pfam01312 252 PKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVGQEIPEELYQAV 331
|
....
gi 446632016 633 ATIL 636
Cdd:pfam01312 332 AEVL 335
|
|
| flhB |
TIGR00328 |
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ... |
315-644 |
1.14e-104 |
|
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 129428 Cd Length: 347 Bit Score: 321.14 E-value: 1.14e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYF---FMRTYYILRKYIHGVglrtDMSSESVTELLKNASTDLFTLLWPLLGI 391
Cdd:TIGR00328 17 EGNVPKSREVNSAAVLLAGVLSLLFFGDGLadlLVVLMSFFLSFETSD----ILNLGSLVGIFFQSIREVLLLLLPIFVL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 392 TLVGAIIGNVAQVGFIFTPRALSFNFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGL 470
Cdd:TIGR00328 93 LLVVGVLSNIAQFGFLFTTKPLKPKFSKINPiKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSLGELLSLSLYSL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 471 EQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMnKRKMLA 550
Cdd:TIGR00328 173 VQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQREAA-RRRMMQ 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 551 KVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYR 630
Cdd:TIGR00328 252 EVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVEIGQEIPPELYK 331
|
330
....*....|....
gi 446632016 631 AIATILSRLESFRR 644
Cdd:TIGR00328 332 AVAEVLAYVYKLKK 345
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| flhB |
PRK12773 |
flagellar biosynthesis protein FlhB; Reviewed |
1-646 |
0e+00 |
|
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 183737 Cd Length: 646 Bit Score: 1247.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 1 MKKAIWSRTKKLVVVFVQNPKRFFIRIFYKNLSRVPWVCESGKNSFVKSVLDVFYRFMLFGKRFGKFIFWKQYYDIVSDF 80
Cdd:PRK12773 1 MKKAIWSRTKKLVVVFVQNPKRFFIRIFYKNLSRVPWVCESGKDSFVKSVLDVFYRFMLFGKRFGKFIFWKQYYDIVSDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 81 SKKCESSHNLREIKNLMGVPTIYTRSKILWEFPQFTQDRKSCKSSYNLQNVVKSESNSDHFSNRNTVSLQNRQEGLVIKD 160
Cdd:PRK12773 81 SKKCESSHNLHEIKNLMGVPTIYTRSKILWEFPQFTQDRKSCKSSYNLQNVVKSESNSDHFSNRNTVSLQNRQEGLVIKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 161 VVHPTSFIFSFLHHFDRWGQKSTSHSLWMFRTIERFFSIIKKLFFKKKFSKSFIVGIFLFYKKIVKKFLGYSEPIDSKLT 240
Cdd:PRK12773 161 VVHPTSFIFSFLHHFDRWGQKSTSHSLWMFRTIERFFSIIKKLFFKKKFSKSFIVGIFLFYKKIVKKFLGYSEPIDSKLT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 241 EFLNSNLFRYFLQFGFINLTIEIVRRIFRFKIFPPNICLSTEAADFKIDLQLFAAEDEGRTEPGSERRRREEREKGNVPK 320
Cdd:PRK12773 241 EFLNSNLFCYFLQFGFINLTIEIVRRIFRFKIFPPNICLSTEAADFKIDLQLFAAEDEGRTEPGSERRRREEREKGNVPK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 321 SPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGN 400
Cdd:PRK12773 321 SPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 401 VAQVGFIFTPRALSFNFSRIRPNFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAVALVMNS 480
Cdd:PRK12773 401 VAQVGFIFTPRALSFNFSRIRPNFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQAVALVMNS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 481 SFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMLAKVPEADVVIT 560
Cdd:PRK12773 481 SFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMLAKVPEADVVIT 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 561 NPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRLE 640
Cdd:PRK12773 561 NPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRLE 640
|
....*.
gi 446632016 641 SFRRAV 646
Cdd:PRK12773 641 SFRRAV 646
|
|
| FlhB |
COG1377 |
Flagellar biosynthesis protein FlhB [Cell motility]; |
315-644 |
3.91e-128 |
|
Flagellar biosynthesis protein FlhB [Cell motility];
Pssm-ID: 440987 Cd Length: 352 Bit Score: 381.77 E-value: 3.91e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGlRTDMSSESVTELLKNASTDLFTLLWPLLGITLV 394
Cdd:COG1377 24 KGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFAR-ALALDPADLLALLGALLLEALLALLPLLLVLAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 395 GAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQ 472
Cdd:COG1377 103 AALLANLLQGGFLFSTKALKPKFSRLNPisGLKRLF-SLRALVELLKSLLKLLLVGGVAYLVLRGELPELLALAALPLAA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 473 AVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRkMLAKV 552
Cdd:COG1377 182 ALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEVKGRIRQLQREMARRR-MMAAV 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 553 PEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAI 632
Cdd:COG1377 261 PKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARALYATVEVGQEIPEELYQAV 340
|
330
....*....|..
gi 446632016 633 ATILSRLESFRR 644
Cdd:COG1377 341 AEVLAYVYQLKR 352
|
|
| Bac_export_2 |
pfam01312 |
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ... |
315-636 |
3.34e-126 |
|
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Pssm-ID: 460157 Cd Length: 338 Bit Score: 376.40 E-value: 3.34e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTdmsSESVTELLKNASTDLFTLLWPLLGITLV 394
Cdd:pfam01312 17 KGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAAD---PAALLALLLALLLELLLLLLPLLLVLLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 395 GAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLEQ 472
Cdd:pfam01312 94 AALLANLLQVGFLFSTKALKPKFSKLNPisGLKRIF-SLRSLVELLKSLLKVAVVGAVAYLVLRGNLPELLALADLPLEA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 473 AVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRkMLAKV 552
Cdd:pfam01312 173 ALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQREMARRR-MMAEV 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 553 PEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAI 632
Cdd:pfam01312 252 PKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVGQEIPEELYQAV 331
|
....
gi 446632016 633 ATIL 636
Cdd:pfam01312 332 AEVL 335
|
|
| flhB |
PRK05702 |
flagellar type III secretion system protein FlhB; |
293-644 |
1.32e-114 |
|
flagellar type III secretion system protein FlhB;
Pssm-ID: 235569 Cd Length: 359 Bit Score: 347.14 E-value: 1.32e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 293 FAAEDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGlRTDMSSESVTE 372
Cdd:PRK05702 2 AEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDR-EIIFDPNDVLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 373 LLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAWV 450
Cdd:PRK05702 81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPlkGLKRMF-SAQGLVELLKSLLKVLLVGGV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 451 SYIIISKDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRS 530
Cdd:PRK05702 160 AYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 531 LQARRRQLARDMMNKRkMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQ 610
Cdd:PRK05702 240 VKGRIRQLQREMARRR-MMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPL 318
|
330 340 350
....*....|....*....|....*....|....
gi 446632016 611 ARGLYEEVELGAEVPQQFYRAIATILSRLESFRR 644
Cdd:PRK05702 319 ARALYATVEIGQEIPEELYKAVAEVLAYVYQLKR 352
|
|
| flhB |
TIGR00328 |
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ... |
315-644 |
1.14e-104 |
|
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 129428 Cd Length: 347 Bit Score: 321.14 E-value: 1.14e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYF---FMRTYYILRKYIHGVglrtDMSSESVTELLKNASTDLFTLLWPLLGI 391
Cdd:TIGR00328 17 EGNVPKSREVNSAAVLLAGVLSLLFFGDGLadlLVVLMSFFLSFETSD----ILNLGSLVGIFFQSIREVLLLLLPIFVL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 392 TLVGAIIGNVAQVGFIFTPRALSFNFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGL 470
Cdd:TIGR00328 93 LLVVGVLSNIAQFGFLFTTKPLKPKFSKINPiKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSLGELLSLSLYSL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 471 EQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMnKRKMLA 550
Cdd:TIGR00328 173 VQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQREAA-RRRMMQ 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 551 KVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYR 630
Cdd:TIGR00328 252 EVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVEIGQEIPPELYK 331
|
330
....*....|....
gi 446632016 631 AIATILSRLESFRR 644
Cdd:TIGR00328 332 AVAEVLAYVYKLKK 345
|
|
| EscU |
COG4792 |
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ... |
315-641 |
3.30e-71 |
|
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443821 Cd Length: 344 Bit Score: 234.02 E-value: 3.30e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRtyyiLRKYIHGVGLRTDMS-SESVTELLKNASTDLFTLLWPLLGITL 393
Cdd:COG4792 20 KGQVAKSKDIVSAVQLLALLGYLLLEGDALVEH----LQALILLPAQLLNLPfDEALNQLLGALLELLLRLVLPLLAVLI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 394 VGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRqTLFNLGKSLAKVGLIAWVSYIIIsKDFFPILLS-GEMGL 470
Cdd:COG4792 96 LATILSNVAQVGFLFATEAIKPKLEKINPveNLKRIFSLR-SLVELLKSLLKVVLLGLIFYYLL-RGYLPTLVYlPYCGL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 471 EQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNkRKMLA 550
Cdd:COG4792 174 ACAGPVVGALLKWLWGVLLGAYLVFGLADYLFQRYQFRKQLRMSKDEVKREYKDMEGDPEIKQKRRRLHREIQS-GSLAL 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 551 KVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYR 630
Cdd:COG4792 253 NVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLARALYADAGLGEYIPEDLFE 332
|
330
....*....|.
gi 446632016 631 AIATILSRLES 641
Cdd:COG4792 333 PVAEVLRLALL 343
|
|
| PRK12772 |
PRK12772 |
fused FliR family export protein/FlhB family type III secretion system protein; |
292-636 |
4.90e-68 |
|
fused FliR family export protein/FlhB family type III secretion system protein;
Pssm-ID: 237199 [Multi-domain] Cd Length: 609 Bit Score: 233.42 E-value: 4.90e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 292 LFAAEDegRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHgVGLRTDMSSESVT 371
Cdd:PRK12772 259 IFASDD--KTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVANTLKETMIYFLN-NYLNMNLNYNSLN 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 372 ELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRqTLFNLGKSLAKVGLIAW 449
Cdd:PRK12772 336 SLAIITLLRVAKIFLPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPinGFKRMFSMR-SVMELLKDLTIITIVGI 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 450 VSYIIISKDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDR 529
Cdd:PRK12772 415 VGYKFLQDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDP 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 530 SLQARRRQLARDMMNKRkMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRL 609
Cdd:PRK12772 495 QIKAKIKQKQREMAMQR-MMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKP 573
|
330 340
....*....|....*....|....*..
gi 446632016 610 QARGLYEEVELGAEVPQQFYRAIATIL 636
Cdd:PRK12772 574 LARLIYKKVEIDQEIPQDMYQAVAEIL 600
|
|
| PRK12721 |
PRK12721 |
EscU/YscU/HrcU family type III secretion system export apparatus switch protein; |
315-636 |
4.00e-51 |
|
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
Pssm-ID: 183700 Cd Length: 349 Bit Score: 180.64 E-value: 4.00e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTdmsSESVTELLKNASTDLFTLLWPLLGITLV 394
Cdd:PRK12721 19 KGQVVKSVEITSGVQLAALLLYFLLEGPSLVEAIIGLINSTIQLLNKPF---LYALTQILGAVLEVLLRFLLVLGAGLIV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 395 GAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRqTLFNLGKSLAKVGLIAWVSYIII-----SKDFFPillsge 467
Cdd:PRK12721 96 ATVGTGIAQVGPLLASKAIGPKAEKINPvsNAKQIFSLK-SVFELCKSLLKVVILSLIFAYLLhyyapSFAYLP------ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 468 mGLEQAVALVMNSSFKIFLIVGIILLAI--SIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNK 545
Cdd:PRK12721 169 -YCGAACGLPVVSTLIFWLWGGLLACYLvfGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSEIQSG 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 546 RkmLA-KVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEV 624
Cdd:PRK12721 248 S--LAnNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLARALFKEVECGDYI 325
|
330
....*....|..
gi 446632016 625 PQQFYRAIATIL 636
Cdd:PRK12721 326 PETLFEPVAALL 337
|
|
| flhB |
PRK13109 |
flagellar biosynthesis protein FlhB; Reviewed |
296-644 |
1.02e-46 |
|
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 183864 Cd Length: 358 Bit Score: 168.83 E-value: 1.02e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 296 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAgvILVYLMgeyFFMR--------TYYILRKYIHGVGLRTdmsS 367
Cdd:PRK13109 6 DKESKTEEATERKVRDAIEKGDIPVSREAPVFASMLG--LLIALA---FFARgqaaqltgDLAPLLDDPRGFSLET---G 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 368 ESVTELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVgfifTPRalsFNFSRIRPNFKKVLPT--------RQTLFNLGK 439
Cdd:PRK13109 78 ADAMLLLSRVALAAGRFLLPILLILAVCGLAASLLQN----LPR---FVLDRIQPKWSRISPMkgwtrifgTSGQVEFLK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 440 SLAKVGLIAWVSYIIISKD--------FFPILLSGEMGLEQAVALVMNSSfkiflIVGIILLAIsivDYLYQRYEYEESL 511
Cdd:PRK13109 151 SLFKFLSVSVVVLLLLRSErakavnamFVDPSQLPELILTVAIRLVSAVA-----IATIVLVAL---DLVWARFHWRRSL 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 512 KMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRkMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFAL 591
Cdd:PRK13109 223 RMTKQEIKDEHKQAEGDPSVKARLRSLAQDRARNR-MLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIAL 301
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 446632016 592 LIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIATILSRLESFRR 644
Cdd:PRK13109 302 KIREIAEENGIPVIEDKPLARSLYDAVQVDQVIPAEFYRPVAQILYFLFSRAR 354
|
|
| flhB |
PRK12468 |
flagellar biosynthesis protein FlhB; Reviewed |
297-644 |
7.59e-43 |
|
flagellar biosynthesis protein FlhB; Reviewed
Pssm-ID: 171522 Cd Length: 386 Bit Score: 159.04 E-value: 7.59e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 297 DEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKyihgvGLRTDMSSESV-TELLK 375
Cdd:PRK12468 6 DQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQ-----GLHFDHSMVSNdKQMLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 376 NASTDLFTLLWPLL----GITLVgAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAW 449
Cdd:PRK12468 81 QIGMLLRQTLLAMLpifaGLVIV-ALAVPMLLGGVLFSGESIKFDLKRMSPvaGLKRMF-SSQALAELLKAILKATLVGW 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 450 VSYIIISKDFFPILlsgEMGLEQAVALVMNSSFKIFLIVGIILLAISIV---DYLYQRYEYEESLKMTPSEAKREAKESD 526
Cdd:PRK12468 159 VTGLFLWHNWPDMM---RLIAAPPVAALGDALHLIIFCGLVVVLGLSPMvgfDVFYQITSHIKKLRMTKQDIRDEFKNQE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 527 GDRSLQARRRQLARdMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVE 606
Cdd:PRK12468 236 GDPHVKGRIRQQQR-AMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLE 314
|
330 340 350
....*....|....*....|....*....|....*...
gi 446632016 607 DRLQARGLYEEVELGAEVPQQFYRAIATILSRLESFRR 644
Cdd:PRK12468 315 APPLARALFRHSEVGQHIPATLYAAVAEVLAWVYQLKR 352
|
|
| PRK06298 |
PRK06298 |
type III secretion system protein; Validated |
315-641 |
9.02e-41 |
|
type III secretion system protein; Validated
Pssm-ID: 180519 Cd Length: 356 Bit Score: 152.31 E-value: 9.02e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDmsSESVTELLKNASTDLFTLLWPLLG-ITL 393
Cdd:PRK06298 19 KGQVAKSQDFPSAITFIVSMFLTFSLSSFFAKHLGSFLVSIFKTAPTNHD--PVVTVYYLKNCLILILTASLPLLGaVAF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 394 VGAIIGNVAqVGFIFTPRALSFNFSRIRP--NFKKVLPTRqTLFNLGKSLAKVGLIAWVSYIIISKDFFPILLSGEMGLE 471
Cdd:PRK06298 97 VGVLVGFLI-VGPTFSTEVFKPDIKKFNPidNLKQKFKVK-TLIELLKSILKISGAALILYIVLKNRVPLIIETAGVPPL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 472 QAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKRKMlAK 551
Cdd:PRK06298 175 VTAQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDTS-SQ 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 552 VPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRA 631
Cdd:PRK06298 254 VKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPESTYEA 333
|
330
....*....|
gi 446632016 632 IATILSRLES 641
Cdd:PRK06298 334 IGEILLYITS 343
|
|
| PRK08156 |
PRK08156 |
EscU/YscU/HrcU family type III secretion system export apparatus switch protein; |
315-615 |
7.20e-28 |
|
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
Pssm-ID: 236168 Cd Length: 361 Bit Score: 115.49 E-value: 7.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 315 KGNVPKSPELPAAVVLLAGVI-LVYLMGEYFFMRTY-YILRkyihgvglrtDMSSESVTELLKNASTDLFTLLWPLLGIT 392
Cdd:PRK08156 19 KGQSFKSKDLITAVVLLGGIAyLVSFGSFSEFMSIYkRILA----------DNFDINIGDYFLAVMIIFLKILIPFLLLC 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 393 LVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLPTRqTLFNLGKSLAKVGLIAWVSYIIISKD---FFPILLSGE 467
Cdd:PRK08156 89 LLAGALPTLLQTRFVLATEAIKLNFSALNPvkGLKKIFSLR-TVKEFVKALLYLIVFALTAYVFWKNYkkeIFSQLNGNI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446632016 468 MGL-----EQAVALVMnssfkIFLIVGIILLaisIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDM 542
Cdd:PRK08156 168 VGLiviwrELLVKLVL-----TFLACALIVL---ILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEI 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446632016 543 MNKRKMlAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLY 615
Cdd:PRK08156 240 LSEQVK-SDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLY 311
|
|
| YlqH |
COG2257 |
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ... |
566-637 |
2.17e-19 |
|
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441858 [Multi-domain] Cd Length: 95 Bit Score: 83.31 E-value: 2.17e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446632016 566 AVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYeEVELGAEVPQQFYRAIATILS 637
Cdd:COG2257 11 AVALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLS-QLDLGDEIPPELYQAVAEILA 81
|
|
| |
