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Conserved domains on  [gi|446117011|ref|WP_000194866|]
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MULTISPECIES: DUF5962 family protein [Lactobacillales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5962 pfam19387
Family of unknown function (DUF5962); This entry represents a member of a biosynthetic gene ...
 1-98 4.54e-36

Family of unknown function (DUF5962); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000498) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide).


:

Pssm-ID: 437219  Cd Length: 99  Bit Score: 118.05  E-value: 4.54e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446117011   1 MTQTLEEMRYQLEEWLSQGFTSSEDRANYQTLKEQYEDETFDYSFSRREITGQLELIITSRENDFPSLDEVTKTEYLDLV 80
Cdd:pfam19387  1 MTQTVEDMRYQLEEMLAAGFKSPEDRANYQALKEDYEDESEDYSFSIREITGQIDIICKTRENDFPDLEEGILADYMELV 80

                         90
                 ....*....|....*...
gi 446117011  81 AQLDDLDKRQADYYRKQL 98
Cdd:pfam19387 81 AQLKRYDTKQADKYLKML 98
 
Name Accession Description Interval E-value
DUF5962 pfam19387
Family of unknown function (DUF5962); This entry represents a member of a biosynthetic gene ...
 1-98 4.54e-36

Family of unknown function (DUF5962); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000498) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide).


Pssm-ID: 437219  Cd Length: 99  Bit Score: 118.05  E-value: 4.54e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446117011   1 MTQTLEEMRYQLEEWLSQGFTSSEDRANYQTLKEQYEDETFDYSFSRREITGQLELIITSRENDFPSLDEVTKTEYLDLV 80
Cdd:pfam19387  1 MTQTVEDMRYQLEEMLAAGFKSPEDRANYQALKEDYEDESEDYSFSIREITGQIDIICKTRENDFPDLEEGILADYMELV 80

                         90
                 ....*....|....*...
gi 446117011  81 AQLDDLDKRQADYYRKQL 98
Cdd:pfam19387 81 AQLKRYDTKQADKYLKML 98
 
Name Accession Description Interval E-value
DUF5962 pfam19387
Family of unknown function (DUF5962); This entry represents a member of a biosynthetic gene ...
 1-98 4.54e-36

Family of unknown function (DUF5962); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000498) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide).


Pssm-ID: 437219  Cd Length: 99  Bit Score: 118.05  E-value: 4.54e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446117011   1 MTQTLEEMRYQLEEWLSQGFTSSEDRANYQTLKEQYEDETFDYSFSRREITGQLELIITSRENDFPSLDEVTKTEYLDLV 80
Cdd:pfam19387  1 MTQTVEDMRYQLEEMLAAGFKSPEDRANYQALKEDYEDESEDYSFSIREITGQIDIICKTRENDFPDLEEGILADYMELV 80

                         90
                 ....*....|....*...
gi 446117011  81 AQLDDLDKRQADYYRKQL 98
Cdd:pfam19387 81 AQLKRYDTKQADKYLKML 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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