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Conserved domains on  [gi|446085937|ref|WP_000163792|]
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MULTISPECIES: hypothetical protein [Bacteria]

Protein Classification

IS1595 family transposase; transposase( domain architecture ID 11466934)

IS1595 family transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
172-325 3.90e-06

Transposase InsA [Mobilome: prophages, transposons];


:

Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 48.71  E-value: 3.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446085937 172 KQFYKRGKSRGKSQRYQCKACKKFTNVLPkreeTTTYHQQKNTILPMFAKMVVGRVSVSRTCDILGIGvgtyyhkLEWLY 251
Cdd:COG3677   25 TRIVKNGKTRNGRQRYRCKDCGRTFTVTT----GTIFEGSKLPLWLQAIRLLLNGISLRQIARVLGVS-------YKTVW 93
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446085937 252 RRCLEFLERYETQPLQTKKFNEMWLNTDKMHYYLNNVRKKGQGSKKYTGFEDLNMQTYIVVSAEVLSRYVFRSD 325
Cdd:COG3677   94 RWLHRIREALDELVDEVDEGEGLVGEEDEKTKSKRRRKRGKKLVKGLKKGVVVKVRARGARKSKLAVRLELADL 167
 
Name Accession Description Interval E-value
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
172-325 3.90e-06

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 48.71  E-value: 3.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446085937 172 KQFYKRGKSRGKSQRYQCKACKKFTNVLPkreeTTTYHQQKNTILPMFAKMVVGRVSVSRTCDILGIGvgtyyhkLEWLY 251
Cdd:COG3677   25 TRIVKNGKTRNGRQRYRCKDCGRTFTVTT----GTIFEGSKLPLWLQAIRLLLNGISLRQIARVLGVS-------YKTVW 93
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446085937 252 RRCLEFLERYETQPLQTKKFNEMWLNTDKMHYYLNNVRKKGQGSKKYTGFEDLNMQTYIVVSAEVLSRYVFRSD 325
Cdd:COG3677   94 RWLHRIREALDELVDEVDEGEGLVGEEDEKTKSKRRRKRGKKLVKGLKKGVVVKVRARGARKSKLAVRLELADL 167
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
173-256 2.05e-03

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 39.95  E-value: 2.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446085937 173 QFYKRGKSRGKSQRYQCKACKK-FTNVLPKR---EETttyhqqKNTILpmfaKMVVGRVSVSRTCDILGIGVGTYYHKLE 248
Cdd:NF033558   8 NVVKNGKSVRGKQRYRCKDCGRqFQLDYEYRgysEGT------KEKIL----QLYLNGMGFRAIARVLGVSHNTVLRWLK 77

                 ....*...
gi 446085937 249 WLYRRCLE 256
Cdd:NF033558  78 KLGPRQVT 85
 
Name Accession Description Interval E-value
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
172-325 3.90e-06

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 48.71  E-value: 3.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446085937 172 KQFYKRGKSRGKSQRYQCKACKKFTNVLPkreeTTTYHQQKNTILPMFAKMVVGRVSVSRTCDILGIGvgtyyhkLEWLY 251
Cdd:COG3677   25 TRIVKNGKTRNGRQRYRCKDCGRTFTVTT----GTIFEGSKLPLWLQAIRLLLNGISLRQIARVLGVS-------YKTVW 93
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446085937 252 RRCLEFLERYETQPLQTKKFNEMWLNTDKMHYYLNNVRKKGQGSKKYTGFEDLNMQTYIVVSAEVLSRYVFRSD 325
Cdd:COG3677   94 RWLHRIREALDELVDEVDEGEGLVGEEDEKTKSKRRRKRGKKLVKGLKKGVVVKVRARGARKSKLAVRLELADL 167
transpos_IS1 NF033558
IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family ...
173-256 2.05e-03

IS1 family transposase; Proteins of this family are DDE transposases encoded by the IS1 family elements usually through a translational frameshift mechanism.


Pssm-ID: 468085 [Multi-domain]  Cd Length: 199  Bit Score: 39.95  E-value: 2.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446085937 173 QFYKRGKSRGKSQRYQCKACKK-FTNVLPKR---EETttyhqqKNTILpmfaKMVVGRVSVSRTCDILGIGVGTYYHKLE 248
Cdd:NF033558   8 NVVKNGKSVRGKQRYRCKDCGRqFQLDYEYRgysEGT------KEKIL----QLYLNGMGFRAIARVLGVSHNTVLRWLK 77

                 ....*...
gi 446085937 249 WLYRRCLE 256
Cdd:NF033558  78 KLGPRQVT 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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