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Conserved domains on  [gi|445985425|ref|WP_000063280|]
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MULTISPECIES: major capsid protein [Bacteria]

Protein Classification

major capsid protein( domain architecture ID 10511084)

major capsid protein similar to gpE, which interacts with the packaging chaperone, FI protein (gpFI); the interaction is essential for the function of gpFI, which is required for DNA packaging

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 4-339 2.71e-78

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


:

Pssm-ID: 427552  Cd Length: 335  Bit Score: 242.65  E-value: 2.71e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425    4 YTTAQLLAANEQKFKFDPLFLRLFFRESyPFTTEKVYLSQIPGLVNMALYVSPIVSGEVIRSRGGSTSEFTPGYVKPKHE 83
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDLLFPER-PVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425   84 VNPQMTLR-RLPDEDpqnlaDPAYRRRRIIMQNMRDEELAIAQVEEMQAVSAVLKGKYTMTGEAFDPVEVDMGRSEENNI 162
Cdd:pfam03864  80 ITADELQNvRAFGEE-----TPLERVQRVVARKLADLRDKIDRTLEWMRAGALKGGILDADGETLYDLFVDFGVTAKHTI 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425  163 -TQSGGTEWSkrDKSTYDPTDDIEAYALN----ASGVVNIIVFDPKGWALFRSFKAVKEKLDTRR-GSNSELETAVKDLG 236
Cdd:pfam03864 155 dFLLGTAKWD--DDVRADPLEDLRAWEDLlakgTGGTGVRALCGPKFFDALISHPKVKEAYDNTQaGLVGQLEAAELDLR 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425  237 KAVSYKGmygdVAIVVYSGQYVE--NGVKKNFLPDNTMVLGNTQ-ARGLRTYGCIQDADAQRE-GINASARYPKNWVTTG 312
Cdd:pfam03864 233 DGFTFGG----ITFEEYRGTYTDdaDGTSKPFIPDGEVLLFPTGvADGFRTYGAPADYMEDVNaGTVGLPRYAKQWEERD 308

                         330       340
                  ....*....|....*....|....*..
gi 445985425  313 DPAREFTMIQSAPLMLLADPDEFVSVQ 339
Cdd:pfam03864 309 DPKGRDLEAQSNPLPVCTRPDALVKAT 335
 
Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 4-339 2.71e-78

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


Pssm-ID: 427552  Cd Length: 335  Bit Score: 242.65  E-value: 2.71e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425    4 YTTAQLLAANEQKFKFDPLFLRLFFRESyPFTTEKVYLSQIPGLVNMALYVSPIVSGEVIRSRGGSTSEFTPGYVKPKHE 83
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDLLFPER-PVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425   84 VNPQMTLR-RLPDEDpqnlaDPAYRRRRIIMQNMRDEELAIAQVEEMQAVSAVLKGKYTMTGEAFDPVEVDMGRSEENNI 162
Cdd:pfam03864  80 ITADELQNvRAFGEE-----TPLERVQRVVARKLADLRDKIDRTLEWMRAGALKGGILDADGETLYDLFVDFGVTAKHTI 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425  163 -TQSGGTEWSkrDKSTYDPTDDIEAYALN----ASGVVNIIVFDPKGWALFRSFKAVKEKLDTRR-GSNSELETAVKDLG 236
Cdd:pfam03864 155 dFLLGTAKWD--DDVRADPLEDLRAWEDLlakgTGGTGVRALCGPKFFDALISHPKVKEAYDNTQaGLVGQLEAAELDLR 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425  237 KAVSYKGmygdVAIVVYSGQYVE--NGVKKNFLPDNTMVLGNTQ-ARGLRTYGCIQDADAQRE-GINASARYPKNWVTTG 312
Cdd:pfam03864 233 DGFTFGG----ITFEEYRGTYTDdaDGTSKPFIPDGEVLLFPTGvADGFRTYGAPADYMEDVNaGTVGLPRYAKQWEERD 308

                         330       340
                  ....*....|....*....|....*..
gi 445985425  313 DPAREFTMIQSAPLMLLADPDEFVSVQ 339
Cdd:pfam03864 309 DPKGRDLEAQSNPLPVCTRPDALVKAT 335
 
Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 4-339 2.71e-78

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


Pssm-ID: 427552  Cd Length: 335  Bit Score: 242.65  E-value: 2.71e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425    4 YTTAQLLAANEQKFKFDPLFLRLFFRESyPFTTEKVYLSQIPGLVNMALYVSPIVSGEVIRSRGGSTSEFTPGYVKPKHE 83
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDLLFPER-PVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425   84 VNPQMTLR-RLPDEDpqnlaDPAYRRRRIIMQNMRDEELAIAQVEEMQAVSAVLKGKYTMTGEAFDPVEVDMGRSEENNI 162
Cdd:pfam03864  80 ITADELQNvRAFGEE-----TPLERVQRVVARKLADLRDKIDRTLEWMRAGALKGGILDADGETLYDLFVDFGVTAKHTI 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425  163 -TQSGGTEWSkrDKSTYDPTDDIEAYALN----ASGVVNIIVFDPKGWALFRSFKAVKEKLDTRR-GSNSELETAVKDLG 236
Cdd:pfam03864 155 dFLLGTAKWD--DDVRADPLEDLRAWEDLlakgTGGTGVRALCGPKFFDALISHPKVKEAYDNTQaGLVGQLEAAELDLR 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445985425  237 KAVSYKGmygdVAIVVYSGQYVE--NGVKKNFLPDNTMVLGNTQ-ARGLRTYGCIQDADAQRE-GINASARYPKNWVTTG 312
Cdd:pfam03864 233 DGFTFGG----ITFEEYRGTYTDdaDGTSKPFIPDGEVLLFPTGvADGFRTYGAPADYMEDVNaGTVGLPRYAKQWEERD 308

                         330       340
                  ....*....|....*....|....*..
gi 445985425  313 DPAREFTMIQSAPLMLLADPDEFVSVQ 339
Cdd:pfam03864 309 DPKGRDLEAQSNPLPVCTRPDALVKAT 335
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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