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Conserved domains on  [gi|444719196|gb|ELW59994|]
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Germinal center B-cell-expressed transcript 2 protein [Tupaia chinensis]

Protein Classification

HGAL domain-containing protein( domain architecture ID 11238830)

HGAL domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HGAL pfam15666
Germinal center-associated lymphoma; HGAL is a family of mammalian sequences typically between ...
 45-131 1.53e-52

Germinal center-associated lymphoma; HGAL is a family of mammalian sequences typically between 104 and 179 amino acids in length. Members were discovered in a search for proteins precipitating diffuse large B-cell lymphomas. HGAL interacts with the cytoskeleton and aids the activity of interleukin-6 on cell migration. It also modulates the RhoA signalling pathway.


:

Pssm-ID: 464789  Cd Length: 88  Bit Score: 161.47  E-value: 1.53e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444719196   45 EEMSSSPIQDNADQTYTEDLFYTLISHKVL-KRPSGNSAEEYYENIPCKAERPRECSGGTETEYSLLRVSSMPKLPPFPG 123
Cdd:pfam15666   1 KGMSSAPIQDNADQSYSEELCYTLINHKVLgRRPSGNSAEEYYENISCKTERPRESLGGTETEYSLLRVPSTPRHPPSPE 80


                  ....*...
gi 444719196  124 DEYELLMP 131
Cdd:pfam15666  81 DEYELLMP 88
 
Name Accession Description Interval E-value
HGAL pfam15666
Germinal center-associated lymphoma; HGAL is a family of mammalian sequences typically between ...
 45-131 1.53e-52

Germinal center-associated lymphoma; HGAL is a family of mammalian sequences typically between 104 and 179 amino acids in length. Members were discovered in a search for proteins precipitating diffuse large B-cell lymphomas. HGAL interacts with the cytoskeleton and aids the activity of interleukin-6 on cell migration. It also modulates the RhoA signalling pathway.


Pssm-ID: 464789  Cd Length: 88  Bit Score: 161.47  E-value: 1.53e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444719196   45 EEMSSSPIQDNADQTYTEDLFYTLISHKVL-KRPSGNSAEEYYENIPCKAERPRECSGGTETEYSLLRVSSMPKLPPFPG 123
Cdd:pfam15666   1 KGMSSAPIQDNADQSYSEELCYTLINHKVLgRRPSGNSAEEYYENISCKTERPRESLGGTETEYSLLRVPSTPRHPPSPE 80


                  ....*...
gi 444719196  124 DEYELLMP 131
Cdd:pfam15666  81 DEYELLMP 88
 
Name Accession Description Interval E-value
HGAL pfam15666
Germinal center-associated lymphoma; HGAL is a family of mammalian sequences typically between ...
 45-131 1.53e-52

Germinal center-associated lymphoma; HGAL is a family of mammalian sequences typically between 104 and 179 amino acids in length. Members were discovered in a search for proteins precipitating diffuse large B-cell lymphomas. HGAL interacts with the cytoskeleton and aids the activity of interleukin-6 on cell migration. It also modulates the RhoA signalling pathway.


Pssm-ID: 464789  Cd Length: 88  Bit Score: 161.47  E-value: 1.53e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444719196   45 EEMSSSPIQDNADQTYTEDLFYTLISHKVL-KRPSGNSAEEYYENIPCKAERPRECSGGTETEYSLLRVSSMPKLPPFPG 123
Cdd:pfam15666   1 KGMSSAPIQDNADQSYSEELCYTLINHKVLgRRPSGNSAEEYYENISCKTERPRESLGGTETEYSLLRVPSTPRHPPSPE 80


                  ....*...
gi 444719196  124 DEYELLMP 131
Cdd:pfam15666  81 DEYELLMP 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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