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Conserved domains on  [gi|442799866|gb|AGC75671|]
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30S ribosomal protein S10 [Nonlabens dokdonensis DSW-6]

Protein Classification

30S ribosomal protein S10( domain architecture ID 10011482)

30S ribosomal protein S10 is involved in the assembly of the 30S ribosomal subunit and the binding of tRNA to the ribosome; it can also function in transcription antitermination

Gene Ontology:  GO:0000049|GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 2-87 1.77e-51

30S ribosomal protein S10; Reviewed


:

Pssm-ID: 179076  Cd Length: 102  Bit Score: 156.09  E-value: 1.77e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:PRK00596  17 LLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKTVDALMKLDLPAGV 96


                 ....*.
gi 442799866  82 EVEIKV 87
Cdd:PRK00596  97 DVEIKL 102
 
Name Accession Description Interval E-value
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 2-87 1.77e-51

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 156.09  E-value: 1.77e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:PRK00596  17 LLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKTVDALMKLDLPAGV 96


                 ....*.
gi 442799866  82 EVEIKV 87
Cdd:PRK00596  97 DVEIKL 102
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 2-87 1.37e-44

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 138.72  E-value: 1.37e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:COG0051   17 LLDQSVKKIVETAKRTGAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKTIRALMRLDLPAGV 96


                 ....*.
gi 442799866  82 EVEIKV 87
Cdd:COG0051   97 DIEIKL 102
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 2-87 6.39e-42

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 131.99  E-value: 6.39e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:TIGR01049 14 LLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNPKTIDALMKLDLPAGV 93


                 ....*.
gi 442799866  82 EVEIKV 87
Cdd:TIGR01049 94 DIEIKL 99
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 2-86 2.71e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 115.28  E-value: 2.71e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMK---LELP 78
Cdd:pfam00338 11 LLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDALLRylqLNLP 90


                 ....*...
gi 442799866  79 SGVEVEIK 86
Cdd:pfam00338 91 EGVDVEVK 98
 
Name Accession Description Interval E-value
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 2-87 1.77e-51

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 156.09  E-value: 1.77e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:PRK00596  17 LLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKTVDALMKLDLPAGV 96


                 ....*.
gi 442799866  82 EVEIKV 87
Cdd:PRK00596  97 DVEIKL 102
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 2-87 1.37e-44

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 138.72  E-value: 1.37e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:COG0051   17 LLDQSVKKIVETAKRTGAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKTIRALMRLDLPAGV 96


                 ....*.
gi 442799866  82 EVEIKV 87
Cdd:COG0051   97 DIEIKL 102
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 2-87 6.39e-42

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 131.99  E-value: 6.39e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:TIGR01049 14 LLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNPKTIDALMKLDLPAGV 93


                 ....*.
gi 442799866  82 EVEIKV 87
Cdd:TIGR01049 94 DIEIKL 99
rps10 CHL00135
ribosomal protein S10; Validated
 2-83 4.19e-37

ribosomal protein S10; Validated


Pssm-ID: 177057  Cd Length: 101  Bit Score: 120.09  E-value: 4.19e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMKLELPSGV 81
Cdd:CHL00135  20 LLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSPHVDKDSREHFEIRTHKRIIDIYYPSSETIDSLMKLDLPPGV 99


                 ..
gi 442799866  82 EV 83
Cdd:CHL00135 100 DI 101
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 2-86 2.71e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 115.28  E-value: 2.71e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   2 LVDKSAEKIVKTVKSTGAVVTGPIPLPTHKKIFTVLRSPHVNKKSREQFQLSSYKRLLDIYSSSSKTIDALMK---LELP 78
Cdd:pfam00338 11 LLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDALLRylqLNLP 90


                 ....*...
gi 442799866  79 SGVEVEIK 86
Cdd:pfam00338 91 EGVDVEVK 98
PTZ00039 PTZ00039
40S ribosomal protein S20; Provisional
 5-85 9.60e-06

40S ribosomal protein S20; Provisional


Pssm-ID: 173336  Cd Length: 115  Bit Score: 40.57  E-value: 9.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442799866   5 KSAEK----IVKTVKSTGAVVTGPIPLPTHKKIFTVLRSP-HVNKKSREQFQLSSYKRLLDIYSSSSkTIDALMKLELPS 79
Cdd:PTZ00039  29 KSIEKvcadIITGAKEKNLKVTGPVRMPVKTLRITTRKSPcGEGTNTWDRFEMRIYKRVIDLYSSSD-VVTQITSINIDP 107


                 ....*.
gi 442799866  80 GVEVEI 85
Cdd:PTZ00039 108 GVEVEV 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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