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Conserved domains on  [gi|441495610|gb|AGC51177|]
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cytochrome b, partial (mitochondrion) [Eremippus sp. n. 1 YFW-2013]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-193 3.60e-130

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 369.50  E-value: 3.60e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00156 133 ATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHP 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00156 213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILM 292

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00156 293 ILPFTNKSKFRGNQFYPINKILFWIFVNIVILL 325
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-193 3.60e-130

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 369.50  E-value: 3.60e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00156 133 ATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHP 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00156 213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILM 292

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00156 293 ILPFTNKSKFRGNQFYPINKILFWIFVNIVILL 325
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-193 2.67e-56

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 182.30  E-value: 2.67e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPIG----LNSNIDK 75
Cdd:COG1290  154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDG 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  76 IPFHPYFSFKDsiTFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALF 153
Cdd:COG1290  234 VPFHPYYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMG 311

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 441495610 154 LSISILMIMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:COG1290  312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVL 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 65-193 2.78e-41

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 136.24  E-value: 2.78e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  65 NPIGLNSNIDKIPFHPYFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPN 144
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 441495610 145 KLGGVIALFLSISILMIMPFYNKTKFRGiQFYPINQILFWVMVIVVCLL 193
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVL 128
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
116-193 8.71e-32

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 110.65  E-value: 8.71e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 441495610  116 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVL 78
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 94-183 2.41e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.34  E-value: 2.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   94 MSLLIMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NKTKFRG 172
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90
                  ....*....|.
gi 441495610  173 IQFYPINQILF 183
Cdd:TIGR01156 123 PFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-193 3.60e-130

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 369.50  E-value: 3.60e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00156 133 ATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHP 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00156 213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILM 292

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00156 293 ILPFTNKSKFRGNQFYPINKILFWIFVNIVILL 325
CYTB MTH00145
cytochrome b; Provisional
 1-193 2.84e-109

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 317.23  E-value: 2.84e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00145 144 ATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHP 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00145 224 YYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILF 303

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00145 304 FLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFIL 336
CYTB MTH00119
cytochrome b; Provisional
 1-193 1.54e-107

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 312.99  E-value: 1.54e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00119 144 ATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHP 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00119 224 YFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILF 303

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00119 304 LMPFLHTSKQRSMTFRPLSQLLFWTLVANLLIL 336
CYTB MTH00191
cytochrome b; Provisional
 1-193 1.88e-107

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 312.23  E-value: 1.88e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00191 140 ATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHP 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00191 220 YFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLF 299

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00191 300 LLPLLHTSKQRSNTFRPLTQVVFWLWVANFILL 332
CYTB MTH00131
cytochrome b; Provisional
 1-193 3.01e-106

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 309.66  E-value: 3.01e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00131 143 ATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHP 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00131 223 YFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLM 302

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00131 303 VVPILHTSKQRGLTFRPLTQFLFWTLVADVLIL 335
CYTB MTH00074
cytochrome b; Provisional
 1-187 2.37e-105

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 307.38  E-value: 2.37e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00074 144 ATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHP 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00074 224 YFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILM 303

                        170       180
                 ....*....|....*....|....*..
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMV 187
Cdd:MTH00074 304 LIPMLHTSKQRSLMFRPLTQILFWLLV 330
CYTB MTH00016
cytochrome b; Validated
 1-193 1.86e-103

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 302.37  E-value: 1.86e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00016 144 ATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHP 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00016 224 YYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILF 303

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00016 304 FLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLL 336
CYTB MTH00100
cytochrome b; Provisional
 1-187 1.08e-102

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 300.40  E-value: 1.08e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00100 143 ATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHP 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00100 223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILA 302

                        170       180
                 ....*....|....*....|....*..
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMV 187
Cdd:MTH00100 303 IIPLLHTSKQRSMMFRPLSQCLFWLLV 329
CYTB MTH00034
cytochrome b; Validated
 1-193 1.44e-92

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 274.66  E-value: 1.44e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00034 143 ATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHT 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00034 223 YFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLF 302

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00034 303 LVPILHTSNNQSSTFRPLSQIAFWLLIATFFIL 335
CYTB MTH00224
cytochrome b; Provisional
 1-187 1.65e-84

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 254.46  E-value: 1.65e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00224 144 ATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHP 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00224 224 YYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILF 303

                        170       180
                 ....*....|....*....|....*..
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMV 187
Cdd:MTH00224 304 ILPLTSVMNKRSLPFYPLNQLLFWLLV 330
CYTB MTH00022
cytochrome b; Validated
 1-193 5.00e-84

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 253.08  E-value: 5.00e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00022 142 ATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00022 222 YYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILF 301

                        170       180       190
                 ....*....|....*....|....*....|...
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:MTH00022 302 FLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILL 334
CYTB MTH00053
cytochrome b; Provisional
 1-187 3.27e-83

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 251.16  E-value: 3.27e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00053 144 ATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHY 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00053 224 YYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLF 303

                        170       180
                 ....*....|....*....|....*..
gi 441495610 161 IMPFYNKTKFRGIQFYPINQILFWVMV 187
Cdd:MTH00053 304 FLPYLHKSRFRGLSFRPLSKILFWFLV 330
CYTB MTH00033
cytochrome b; Provisional
 1-187 1.53e-60

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 193.23  E-value: 1.53e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00033 140 ATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHV 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMSLLIMLClINPY---MLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSIS 157
Cdd:MTH00033 220 YFTIKDILGFLILFGVFVIIG-IEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASIL 298

                        170       180       190
                 ....*....|....*....|....*....|
gi 441495610 158 ILMIMPFYNKTKFRGIQFYPINQILFWVMV 187
Cdd:MTH00033 299 VLLLMPILDRSKIRSLTFNPTGKFFFWFIV 328
CYTB MTH00086
cytochrome b; Provisional
 1-166 3.58e-60

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 191.31  E-value: 3.58e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFHP 80
Cdd:MTH00086 132 AVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGP 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  81 YFSFKDSITFVIMMsLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILM 160
Cdd:MTH00086 212 EYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFY 290


                 ....*.
gi 441495610 161 IMPFYN 166
Cdd:MTH00086 291 FFIFVN 296
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-193 2.67e-56

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 182.30  E-value: 2.67e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPIG----LNSNIDK 75
Cdd:COG1290  154 ARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDG 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  76 IPFHPYFSFKDsiTFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALF 153
Cdd:COG1290  234 VPFHPYYTVKD--GFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMG 311

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 441495610 154 LSISILMIMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:COG1290  312 LAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVL 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 65-193 2.78e-41

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 136.24  E-value: 2.78e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  65 NPIGLNSNIDKIPFHPYFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPN 144
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 441495610 145 KLGGVIALFLSISILMIMPFYNKTKFRGiQFYPINQILFWVMVIVVCLL 193
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVL 128
CYTB MTH00046
cytochrome b; Validated
 1-193 3.04e-40

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 139.73  E-value: 3.04e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNI-DKIPFH 79
Cdd:MTH00046 134 ATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFH 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  80 PYFSFKDSITFVIMMSLLIMLCLINPYMLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLFLSISIL 159
Cdd:MTH00046 214 SYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFF 292

                        170       180       190
                 ....*....|....*....|....*....|....
gi 441495610 160 MIMPFYNKTKFRGIqfypINQILFWVMVIVVCLL 193
Cdd:MTH00046 293 LWVPTFNGSSVYSV----WRQVNFWLIVSLFFSL 322
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
116-193 8.71e-32

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 110.65  E-value: 8.71e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 441495610  116 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFYNKTKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVL 78
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-111 5.17e-27

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 100.39  E-value: 5.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610    1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHF-VLPFMIAAMAAIHLFFLHQTGSNNPIGLNSNIDKIPFH 79
Cdd:pfam13631  58 LRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFW 137

                          90       100       110
                  ....*....|....*....|....*....|..
gi 441495610   80 PYFSFKDSITFVIMMSLLIMLCLINPYMLGDP 111
Cdd:pfam13631 138 PVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-64 4.26e-22

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 88.58  E-value: 4.26e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 441495610   1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTGSN 64
Cdd:cd00284  137 ATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-62 7.86e-20

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 82.43  E-value: 7.86e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 441495610    1 ATVITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFHFVLPFMIAAMAAIHLFFLHQTG 62
Cdd:pfam00033 128 ATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 91-193 7.62e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.58  E-value: 7.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610  91 VIM--MSLLIMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NK 167
Cdd:COG5679   44 VILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNV 118

                         90       100
                 ....*....|....*....|....*.
gi 441495610 168 TKFRGIQFYPINQILFWVMVIVVCLL 193
Cdd:COG5679  119 NKFQNPFRRPVATAVFLFGTLVTLWL 144
petD CHL00058
cytochrome b6/f complex subunit IV
 95-171 2.63e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 59.24  E-value: 2.63e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 441495610  95 SLLIMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NKTKFR 171
Cdd:CHL00058  49 ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQ 121
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 94-183 2.41e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.34  E-value: 2.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441495610   94 MSLLIMLCLINPYMLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFLSISILMIMPFY-NKTKFRG 172
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90
                  ....*....|.
gi 441495610  173 IQFYPINQILF 183
Cdd:TIGR01156 123 PFRRPVATTVF 133
petB CHL00070
cytochrome b6
 3-67 1.78e-05

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 43.56  E-value: 1.78e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 441495610   3 VITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPI 67
Cdd:CHL00070 150 IVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 3-67 1.81e-05

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 43.55  E-value: 1.81e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 441495610   3 VITNLLSAIPYLGTDLVQWVWGGFAVDNATLNRFFTFH-FVLPFMIAAMAAIHLFFLHQTGSNNPI 67
Cdd:PRK03735 158 VGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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