|
Name |
Accession |
Description |
Interval |
E-value |
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
19-386 |
1.02e-47 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 165.11 E-value: 1.02e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYERDKDRDARIFGGTLDlhrDSGQEAMKRAGLLQTYYDLALPM-GVNIAD-EKG 96
Cdd:COG0654 6 VLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALS---PRSLELLRRLGLWDRLLARGAPIrGIRVRDgSDG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 97 NILTTKNVKPENRFDNPEINRNDLRTILLNSLQ--NDTVIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIANGGMSKV 174
Cdd:COG0654 83 RVLARFDAAETGLPAGLVVPRADLERALLEAARalGVELRFGTEVTGLEQDADGVTVTLADGRTLRADLVVGADGARSAV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 175 RKfvtdteveetgtfniqadihqpevncpgffqlcngnrlmaahqgnllfanpnnngalHFGISFktsdewkskTLVDFQ 254
Cdd:COG0654 163 RR---------------------------------------------------------LLGIGF---------TGRDYP 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 255 DRNSVVDF---LLKKFSDWDERYKELIRVTSSFVGLATRifPLGKSWKSKRplpITMIGDAAHLMPPFAGQGVNSGLMDA 331
Cdd:COG0654 177 QRALWAGVrteLRARLAAAGPRLGELLELSPRSAFPLRR--RRAERWRRGR---VVLLGDAAHTMHPLGGQGANLALRDA 251
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 441484395 332 LILSDNLTNGKFN-SIEEAIENYEQQMFIYGKEAQEESTQNeIEMFKPDFTFQQLL 386
Cdd:COG0654 252 AALAWKLAAALRGrDDEAALARYERERRPRAARVQRAADAL-GRLFHPDSPPLRLL 306
|
|
| PRK06753 |
PRK06753 |
hypothetical protein; Provisional |
18-355 |
1.57e-24 |
|
hypothetical protein; Provisional
Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 103.23 E-value: 1.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 18 NVAIIGGGPVGLTMAKLLQQNGVDATVYErdKDRDARIFGGTLDLhrdsGQEAMKRAGLlqtyYDLA---------LPmG 88
Cdd:PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFE--KNESVKEVGAGIGI----GDNVIKKLGN----HDLAkgiknagqiLS-T 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 89 VNIADEKGNILTTknVKPENRFDNPEINRNDLRTILLNSLQNDTVIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIAN 168
Cdd:PRK06753 71 MNLLDDKGTLLNK--VKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGAD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 169 GGMSKVRKFVT-DTEVEETGTFNIQADIHQPEVNCPGFFQLCNGNRlmaahqGNL-LFANPNNNGALHFGISFKTSD-EW 245
Cdd:PRK06753 149 GIHSKVRQSVNaDSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTK------GRFgIVPLLNNQAYWFITINAKERDpKY 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 246 KSKTLVDFQDR-----NSVVDfLLKKFSDWDERYKELIRVTssfvglatrifPLgKSWKSKRplpITMIGDAAHLMPPFA 320
Cdd:PRK06753 223 SSFGKPHLQAYfnhypNEVRE-ILDKQSETGILHHDIYDLK-----------PL-KSFVYGR---IVLLGDAAHATTPNM 286
|
330 340 350
....*....|....*....|....*....|....*
gi 441484395 321 GQGVNSGLMDALILSDNLTNGKFnsiEEAIENYEQ 355
Cdd:PRK06753 287 GQGAGQAMEDAIVLANCLNAYDF---EKALQRYDK 318
|
|
| mhpA |
PRK06183 |
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase; |
19-335 |
6.72e-21 |
|
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
Pssm-ID: 235727 [Multi-domain] Cd Length: 500 Bit Score: 94.20 E-value: 6.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYERDKDrdarifggTLDLHR----DSgqEAMK---RAGLLqtyyDLALPM---- 87
Cdd:PRK06183 13 VVIVGAGPVGLTLANLLGQYGVRVLVLERWPT--------LYDLPRavgiDD--EALRvlqAIGLA----DEVLPHttpn 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 88 -GVNIADEKGNILTTKNVKPE--------NRFDNPEINRNdLRTiLLNSLQNDTVIWDRKLVTLEPDKEKWTLTFED--- 155
Cdd:PRK06183 79 hGMRFLDAKGRCLAEIARPSTgefgwprrNAFHQPLLEAV-LRA-GLARFPHVRVRFGHEVTALTQDDDGVTVTLTDadg 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 156 KPSE-TADLVIIANGGMSKVRKFVtDTEVEETGTFN----IQADIHQPEVNCPGFFQLCNGNR---LMAAHQGN-----L 222
Cdd:PRK06183 157 QRETvRARYVVGCDGANSFVRRTL-GVPFEDLTFPErwlvVDVLIANDPLGGPHTYQYCDPARpytSVRLPHGRrrwefM 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 223 LFANpnnngalhfgisfKTSDEWksktlvdfqDRNSVVDFLLKKFSDWDERYkELIRVTssfV-----GLATRifplgks 297
Cdd:PRK06183 236 LLPG-------------ETEEQL---------ASPENVWRLLAPWGPTPDDA-ELIRHA---VytfhaRVADR------- 282
|
330 340 350
....*....|....*....|....*....|....*...
gi 441484395 298 WKSKRPLpitMIGDAAHLMPPFAGQGVNSGLMDALILS 335
Cdd:PRK06183 283 WRSGRVL---LAGDAAHLMPPFAGQGMNSGIRDAANLA 317
|
|
| Ubi-OHases |
TIGR01988 |
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a ... |
18-342 |
8.12e-18 |
|
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]
Pssm-ID: 273913 [Multi-domain] Cd Length: 385 Bit Score: 84.18 E-value: 8.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 18 NVAIIGGGPVGLTMAKLLQQNG-----VDATVYER--DKDRDARIFGgtldLHRDSgQEAMKRAGLLQTYYDL-ALPM-G 88
Cdd:TIGR01988 1 DIVIVGGGMVGLALALALARSGlkvalIEATPLPApaDPGFDNRVSA----LSAAS-IRLLEKLGVWDKIEPArAQPIrD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 89 VNIADEKGNILTtknvkpenRFDNPEINRNDL---------RTILLNSLQND---TVIWDRKLVTLEPDKEKWTLTFEDK 156
Cdd:TIGR01988 76 IHVSDGGSFGAL--------RFDADEIGLEALgyvvenrvlQQALWERLQELpnvTLLCPARVVELPRHSDHVELTLDDG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 157 PSETADLVIIANGGMSKVRKfvtdteveetgtfniQADIHQPEVNcpgFFQLCngnrLMAahqgNLLFANPNNNGA---- 232
Cdd:TIGR01988 148 QQLRARLLVGADGANSKVRQ---------------LAGIPTTGWD---YGQSA----VVA----NVKHERPHQGTAwerf 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 233 LHFG-------------ISFKTSDEwKSKTLVDFQDRnSVVDFLLKKFsdwDERYKELIRVTSSFvglatrIFPLG---- 295
Cdd:TIGR01988 202 TPTGplallplpdnrssLVWTLPPE-EAERLLALSDE-EFLAELQRAF---GSRLGAITLVGERH------AFPLSltha 270
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 441484395 296 KSWKSKRplpITMIGDAAHLMPPFAGQGVNSGLMDALILSDNLTNGK 342
Cdd:TIGR01988 271 KRYVAPR---LALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDAR 314
|
|
| PRK06847 |
PRK06847 |
hypothetical protein; Provisional |
17-375 |
9.42e-17 |
|
hypothetical protein; Provisional
Pssm-ID: 235874 [Multi-domain] Cd Length: 375 Bit Score: 80.69 E-value: 9.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDRDAR-----IFGGTLdlhrdsgqEAMKRAGLLQTYYDLALPM-GVN 90
Cdd:PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYgagitLQGNAL--------RALRELGVLDECLEAGFGFdGVD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 91 IADEKGNILTTKnvkPENRFDNPE------INRNDLRTILLNSLQ--NDTVIWDRKLVTLEPDKEKWTLTFEDKPSETAD 162
Cdd:PRK06847 77 LFDPDGTLLAEL---PTPRLAGDDlpggggIMRPALARILADAARaaGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 163 LVIIANGGMSKVRK--FVTDTEVEETGT----FNIQadiHQPEVNCPGFFQlcnGNRLMAAhqgnllfANPNNNGALHFg 236
Cdd:PRK06847 154 LVVGADGLYSKVRSlvFPDEPEPEYTGQgvwrAVLP---RPAEVDRSLMYL---GPTTKAG-------VVPLSEDLMYL- 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 237 isFKTSDEwKSKTLVDFQDRNSVVDFLLKKFSD--WDERyKELIRVTS--SFVGLATRIFPlgKSWKSKRplpITMIGDA 312
Cdd:PRK06847 220 --FVTEPR-PDNPRIEPDTLAALLRELLAPFGGpvLQEL-REQITDDAqvVYRPLETLLVP--APWHRGR---VVLIGDA 290
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 441484395 313 AHLMPPFAGQGVNSGLMDALILSDNLTNGkfNSIEEAIENYEQQMFIYGKEAQEESTQ-NEIEM 375
Cdd:PRK06847 291 AHATTPHLAQGAGMAIEDAIVLAEELARH--DSLEAALQAYYARRWERCRMVVEASARiGRIEI 352
|
|
| FAD_binding_3 |
pfam01494 |
FAD binding domain; This domain is involved in FAD binding in a number of enzymes. |
19-331 |
1.12e-16 |
|
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
Pssm-ID: 396193 [Multi-domain] Cd Length: 348 Bit Score: 80.45 E-value: 1.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYERDkdrdarifGGTLDLHRDSGQ-----EAMKRAGLLQTYYDLALP---MGVN 90
Cdd:pfam01494 4 VLIVGGGPAGLMLALLLARAGVRVVLVERH--------ATTSVLPRAHGLnqrtmELLRQAGLEDRILAEGVPhegMGLA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 91 IADEKGNILTTKNVKPENRFDNPEinrNDLRTILLNSLQND--TVIWDRKLVTLEPDKEKWTLTFEDKPSET-----ADL 163
Cdd:pfam01494 76 FYNTRRRADLDFLTSPPRVTVYPQ---TELEPILVEHAEARgaQVRFGTEVLSLEQDGDGVTAVVRDRRDGEeytvrAKY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 164 VIIANGGMSKVRKFV-TDTEVEET---GTFNIQADIHQPEVNCPGFFQLCngnRLMAAHQGNLLFAnPNNNGALHFGISF 239
Cdd:pfam01494 153 LVGCDGGRSPVRKTLgIEFEGFEGvpfGSLDVLFDAPDLSDPVERAFVHY---LIYAPHSRGFMVG-PWRSAGRERYYVQ 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 240 KTSDEWKSKTLVDFQDRnsVVDFLLKKFSDWDERYKELIRVTSsfVGLATRIfplGKSWKSKRplpITMIGDAAHLMPPF 319
Cdd:pfam01494 229 VPWDEEVEERPEEFTDE--ELKQRLRSIVGIDLALVEILWKSI--WGVASRV---ATRYRKGR---VFLAGDAAHIHPPT 298
|
330
....*....|..
gi 441484395 320 AGQGVNSGLMDA 331
Cdd:pfam01494 299 GGQGLNTAIQDA 310
|
|
| PRK05868 |
PRK05868 |
FAD-binding protein; |
17-371 |
6.34e-15 |
|
FAD-binding protein;
Pssm-ID: 180297 [Multi-domain] Cd Length: 372 Bit Score: 75.41 E-value: 6.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERDkdRDARIFGGTLDLhRDSGQEAMKRAGLLQTYYDLALPM-GVNIADEK 95
Cdd:PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERH--PGLRPGGQAIDV-RGPALDVLERMGLLAAAQEHKTRIrGASFVDRD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 96 GNILT--TKNVKPENRFDNPEIN--RNDLRTILLNSLQNDT-VIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIANGG 170
Cdd:PRK05868 79 GNELFrdTESTPTGGPVNSPDIEllRDDLVELLYGATQPSVeYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 171 MSKVRKFVTDTE---VEETGTfniqadiHQPEVNCPGFFQLcngNRLMAAHQGNLLFAnpnnngalhfGIsFKTSDEWKS 247
Cdd:PRK05868 159 HSNVRRLVFGPEeqfVKRLGT-------HAAIFTVPNFLEL---DYWQTWHYGDSTMA----------GV-YSARNNTEA 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 248 KTLVDFQDRNSVVDF--LLKKFSDWDERYKELIRVTSSFVGLaTRIFP----------LGKSWKSKRplpITMIGDAAHL 315
Cdd:PRK05868 218 RAALAFMDTELRIDYrdTEAQFAELQRRMAEDGWVRAQLLHY-MRSAPdfyfdemsqiLMDRWSRGR---VALVGDAGYC 293
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 441484395 316 MPPFAGQGVNSGLMDALILSDNLTNGKfNSIEEAIENYEQQMFIYGKEAQEESTQN 371
Cdd:PRK05868 294 CSPLSGQGTSVALLGAYILAGELKAAG-DDYQLGFANYHAEFHGFVERNQWLVSDN 348
|
|
| PRK06126 |
PRK06126 |
hypothetical protein; Provisional |
11-335 |
3.40e-12 |
|
hypothetical protein; Provisional
Pssm-ID: 235704 [Multi-domain] Cd Length: 545 Bit Score: 67.71 E-value: 3.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 11 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGVDATVYERdkdRDARIFGGTLDLHRDSGQEAMKRAGLLQTYYDLALPmgVN 90
Cdd:PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVER---KDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLP--VD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 91 IADEkgNILTTKNVKPE-NRFDNP-----------------------EINRNDLRTILLNSLQND---TVIWDRKLVTLE 143
Cdd:PRK06126 77 YPTD--IAYFTRLTGYElARFRLPsareaitpvggpdgswpspelphRIPQKYLEPILLEHAAAQpgvTLRYGHRLTDFE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 144 PDKEKWTLTFEDKPSET-----ADLVIIANGGMSKVRK-----FVTDTEVEETGTFNIQA-DIHQPEVNCPGFFQLC-NG 211
Cdd:PRK06126 155 QDADGVTATVEDLDGGEsltirADYLVGCDGARSAVRRslgisYEGTSGLQRDLSIYIRApGLAALVGHDPAWMYWLfNP 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 212 NR--LMAAHQGNLLFanpnnngALHfgiSFKTSDEWKSKTLVDFQDR-----NSVVDFLLKKFSDWDERykelIRVTSSF 284
Cdd:PRK06126 235 DRrgVLVAIDGRDEW-------LFH---QLRGGEDEFTIDDVDARAFvrrgvGEDIDYEVLSVVPWTGR----RLVADSY 300
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 441484395 285 VglATRIFplgkswkskrplpitMIGDAAHLMPPFAGQGVNSGLMDALILS 335
Cdd:PRK06126 301 R--RGRVF---------------LAGDAAHLFTPTGGYGMNTGIGDAVNLA 334
|
|
| PRK07236 |
PRK07236 |
hypothetical protein; Provisional |
11-175 |
1.76e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 235980 [Multi-domain] Cd Length: 386 Bit Score: 58.78 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 11 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGVDATVYER-DKDRDARifGGTLDLHRDSgQEAMKRAGLlqtyyDLALPMGV 89
Cdd:PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERsPTELDGR--GAGIVLQPEL-LRALAEAGV-----ALPADIGV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 90 NIA-----DEKGNILTtknvkpenRFDNPEI--NRNDLRTILLNSLQNDTVIWDRKLVTLEPDKEKWTLTFEDKPSETAD 162
Cdd:PRK07236 73 PSReriylDRDGRVVQ--------RRPMPQTqtSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETAD 144
|
170
....*....|...
gi 441484395 163 LVIIANGGMSKVR 175
Cdd:PRK07236 145 LLVGADGGRSTVR 157
|
|
| PRK08243 |
PRK08243 |
4-hydroxybenzoate 3-monooxygenase; Validated |
19-84 |
5.92e-09 |
|
4-hydroxybenzoate 3-monooxygenase; Validated
Pssm-ID: 236198 [Multi-domain] Cd Length: 392 Bit Score: 57.12 E-value: 5.92e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYERdKDRDA---RIFGGTL-----DLHRDSGQEA-MKRAGLLQTYYDLA 84
Cdd:PRK08243 5 VAIIGAGPAGLLLGQLLHLAGIDSVVLER-RSREYvegRIRAGVLeqgtvDLLREAGVGErMDREGLVHDGIELR 78
|
|
| PRK07588 |
PRK07588 |
FAD-binding domain; |
17-386 |
6.93e-08 |
|
FAD-binding domain;
Pssm-ID: 169028 [Multi-domain] Cd Length: 391 Bit Score: 53.97 E-value: 6.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYER-DKDRDarifGGTLDLHRDSGQEAMKRAGLLQTYYDLALPM-GVNIADE 94
Cdd:PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERaPELRT----GGYMVDFWGVGYEVAKRMGITDQLREAGYQIeHVRSVDP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 95 KGNI---LTTKNVKPENRFDNPEINRNDLRTILLNSLQNDT-VIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIANGG 170
Cdd:PRK07588 77 TGRRkadLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVeTIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 171 MSKVRKFVTDTEveetgtfniqadiHQPEVNCPGFFQLC--NGNRlmaaHQGNLLFanpnnngALHFGISFKTS-----D 243
Cdd:PRK07588 157 HSHVRRLVFGPE-------------RDFEHYLGCKVAACvvDGYR----PRDERTY-------VLYNEVGRQVArvalrG 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 244 EWkskTLVDFQDRNSVVDF----------LLKKFSD--WDER--YKELIRVTSSFVGLATRIfpLGKSWKSKRplpITMI 309
Cdd:PRK07588 213 DR---TLFLFIFRAEHDNPpltpaeekqlLRDQFGDvgWETPdiLAALDDVEDLYFDVVSQI--RMDRWSRGR---VALV 284
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 441484395 310 GDAAHLMPPFAGQGVNSGLMDALILSDNLTNGKFNSiEEAIENYEQQM--FIYGKEAqeeSTQNEIEMFKPDFTFQQLL 386
Cdd:PRK07588 285 GDAAACPSLLGGEGSGLAITEAYVLAGELARAGGDH-RRAFDAYEKRLrpFIAGKQA---AAAKFLSVFAPKTRFGLYV 359
|
|
| CzcO |
COG2072 |
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ... |
16-173 |
7.31e-08 |
|
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];
Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 54.10 E-value: 7.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 16 DKNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDrdariFGGTLDLHRdsgqeamkragllqtyYD-LAL--PMGVN-I 91
Cdd:COG2072 6 HVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADD-----VGGTWRDNR----------------YPgLRLdtPSHLYsL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 92 ADEkgnilttKNVKPENRF-DNPEI--------NRNDLRT-ILLNSlqndTVI---WDRklvtlepDKEKWTLTFEDKPS 158
Cdd:COG2072 65 PFF-------PNWSDDPDFpTGDEIlayleayaDKFGLRRpIRFGT----EVTsarWDE-------ADGRWTVTTDDGET 126
|
170
....*....|....*
gi 441484395 159 ETADLVIIANGGMSK 173
Cdd:COG2072 127 LTARFVVVATGPLSR 141
|
|
| gltD |
PRK12810 |
glutamate synthase subunit beta; Reviewed |
15-60 |
3.78e-07 |
|
glutamate synthase subunit beta; Reviewed
Pssm-ID: 237213 [Multi-domain] Cd Length: 471 Bit Score: 51.70 E-value: 3.78e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 441484395 15 SDKNVAIIGGGPVGLTMAKLLQQNGVDATVYERDkDRdariFGGTL 60
Cdd:PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERA-DR----IGGLL 182
|
|
| PRK07045 |
PRK07045 |
putative monooxygenase; Reviewed |
18-358 |
4.52e-07 |
|
putative monooxygenase; Reviewed
Pssm-ID: 136171 [Multi-domain] Cd Length: 388 Bit Score: 51.45 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 18 NVAIIGGGPVGLTMAKLLQQNGVDATVYERDKdRDARIFGGtlDLHRDSGQEAMKRAGLL--------------QTYYDL 83
Cdd:PRK07045 7 DVLINGSGIAGVALAHLLGARGHSVTVVERAA-RNRAQNGA--DLLKPSGIGVVRAMGLLddvfaagglrrdamRLYHDK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 84 ALPMGVNI--ADEKGNILTtknvkpenrfdnpeINRNDLRTILLNSLQ---NDTVIWDRKLVTLEPDKEKW--TLTFEDK 156
Cdd:PRK07045 84 ELIASLDYrsASALGYFIL--------------IPCEQLRRLLLAKLDglpNVRLRFETSIERIERDADGTvtSVTLSDG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 157 PSETADLVIIANGGMSKVRKFVTDTEVEET--------GTFNIQADIHQpevncpgffqlCNgnRLMAAHQGNLLFANPN 228
Cdd:PRK07045 150 ERVAPTVLVGADGARSMIRDDVLRMPAERVpyatpmafGTIALTDSVRE-----------CN--RLYVDSNQGLAYFYPI 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 229 NNGALHFGISFKTSDewkSKTLVDFQDRNSVVDFLLKKFSDWDERYKELIRVTSSFVGLATRIFPLGKSWKSKrplpITM 308
Cdd:PRK07045 217 GDQATRLVVSFPADE---MQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRN----VVL 289
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 441484395 309 IGDAAHLMPPFAGQGVNSGLMDALILSDNLTNGKFNSI--EEAIENYEQQMF 358
Cdd:PRK07045 290 LGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIalADALERFERIRR 341
|
|
| PRK08244 |
PRK08244 |
monooxygenase; |
16-334 |
8.79e-07 |
|
monooxygenase;
Pssm-ID: 236199 [Multi-domain] Cd Length: 493 Bit Score: 50.90 E-value: 8.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 16 DKNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKD--RDARifggTLDLHRDSgQEAMKRAGLLQTYydlaLPMGVNIAD 93
Cdd:PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKEtvPYSK----ALTLHPRT-LEILDMRGLLERF----LEKGRKLPS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 94 EKGNILTTknvkpenRFDNPEINRNDLRTILLNSLQNDTVI--WDRKL----------VTLEPDKEKWTLTFEDKPSE-- 159
Cdd:PRK08244 73 GHFAGLDT-------RLDFSALDTSSNYTLFLPQAETEKVLeeHARSLgveifrgaevLAVRQDGDGVEVVVRGPDGLrt 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 160 -TADLVIIANGGMSKVRK-----FV-TDTEVeeTGTFNIQADIHQPEVncpGFFQLCNgnrlmaaHQGNLLFAnPNNNGA 232
Cdd:PRK08244 146 lTSSYVVGADGAGSIVRKqagiaFPgTDATF--TAMLGDVVLKDPPPS---SVLSLCT-------REGGVMIV-PLSGGI 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 233 LHFgisfktsdewkskTLVDFQDRNSVVDFLLKKfsdwDERYKELIRVTSSFVGL-----------ATRifpLGKSWKSK 301
Cdd:PRK08244 213 YRV-------------LIIDPERPQVPKDEPVTL----EELKTSLIRICGTDFGLndpvwmsrfgnATR---QAERYRSG 272
|
330 340 350
....*....|....*....|....*....|...
gi 441484395 302 RplpITMIGDAAHLMPPFAGQGVNSGLMDALIL 334
Cdd:PRK08244 273 R---IFLAGDAAHIHFPAGGQGLNVGLQDAMNL 302
|
|
| PRK12769 |
PRK12769 |
putative oxidoreductase Fe-S binding subunit; Reviewed |
15-47 |
2.32e-06 |
|
putative oxidoreductase Fe-S binding subunit; Reviewed
Pssm-ID: 183733 [Multi-domain] Cd Length: 654 Bit Score: 49.75 E-value: 2.32e-06
10 20 30
....*....|....*....|....*....|...
gi 441484395 15 SDKNVAIIGGGPVGLTMAKLLQQNGVDATVYER 47
Cdd:PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDR 358
|
|
| GltD |
COG0493 |
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ... |
15-60 |
3.44e-06 |
|
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis
Pssm-ID: 440259 [Multi-domain] Cd Length: 434 Bit Score: 48.59 E-value: 3.44e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 441484395 15 SDKNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKdrdarIFGGTL 60
Cdd:COG0493 120 TGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALD-----KPGGLL 160
|
|
| PRK05714 |
PRK05714 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional |
306-340 |
3.90e-06 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Pssm-ID: 168201 [Multi-domain] Cd Length: 405 Bit Score: 48.67 E-value: 3.90e-06
10 20 30
....*....|....*....|....*....|....*
gi 441484395 306 ITMIGDAAHLMPPFAGQGVNSGLMDALILSDNLTN 340
Cdd:PRK05714 287 LALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLH 321
|
|
| COQ6 |
TIGR01989 |
ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase ... |
292-344 |
5.15e-06 |
|
ubiquinone biosynthesis monooxygenase COQ6; This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Pssm-ID: 273914 [Multi-domain] Cd Length: 437 Bit Score: 48.21 E-value: 5.15e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 441484395 292 FPLG----KSWKSKRplpITMIGDAAHLMPPFAGQGVNSGLMDALILSDNLTNGKFN 344
Cdd:TIGR01989 320 FPLGlghaDEYVTKR---VALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSV 373
|
|
| PRK06617 |
PRK06617 |
2-octaprenyl-6-methoxyphenyl hydroxylase; Validated |
18-340 |
5.68e-06 |
|
2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Pssm-ID: 168629 [Multi-domain] Cd Length: 374 Bit Score: 48.00 E-value: 5.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 18 NVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDRDARIFGG----TLDLHR-------DSGQEAMKRAGLLQTYYdlalp 86
Cdd:PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDirttALTPHSknflfsiDIWEELEKFVAEMQDIY----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 87 mgvnIADEKGN-ILTTKNvkPENRFDNPEINRNDLRTILLNSLQND---TVIWDRKLVTLEPDKEKWTLTFEDKPSEtAD 162
Cdd:PRK06617 78 ----VVDNKASeILDLRN--DADAVLGYVVKNSDFKKILLSKITNNpliTLIDNNQYQEVISHNDYSIIKFDDKQIK-CN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 163 LVIIANGGMSKVRKFVTDTEVEETG----TFNIQADihQPEVNCP-------GFFQLCNgnrLMAAHQGNLLFANPNNNG 231
Cdd:PRK06617 151 LLIICDGANSKVRSHYFANEIEKPYqtalTFNIKHE--KPHENCAmehflplGPFALLP---LKDQYASSVIWSTSSDQA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 232 ALHFGISFKTsdewksktlVDFQDRNSVVDFLLKkfsdwderykelIRVTSSFVGLATRIFPLGKSWKSKrplpITMIGD 311
Cdd:PRK06617 226 ALIVNLPVEE---------VRFLTQRNAGNSLGK------------ITIDSEISSFPLKARIANRYFHNR----IVLIAD 280
|
330 340
....*....|....*....|....*....
gi 441484395 312 AAHLMPPFAGQGVNSGLMDALILSDNLTN 340
Cdd:PRK06617 281 TAHTVHPLAGQGLNQGIKDIEILSMIVSN 309
|
|
| TrkA |
COG0569 |
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ... |
17-105 |
6.25e-06 |
|
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440335 [Multi-domain] Cd Length: 296 Bit Score: 47.37 E-value: 6.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDRDARIFG-GTLDLHRD-SGQEAMKRAGLLQTyyDLALpmgVNIADE 94
Cdd:COG0569 96 MHVIIIGAGRVGRSLARELEEEGHDVVVIDKDPERVERLAEeDVLVIVGDaTDEEVLEEAGIEDA--DAVI---AATGDD 170
|
90
....*....|.
gi 441484395 95 KGNILTTKNVK 105
Cdd:COG0569 171 EANILACLLAK 181
|
|
| PRK08163 |
PRK08163 |
3-hydroxybenzoate 6-monooxygenase; |
109-355 |
1.11e-05 |
|
3-hydroxybenzoate 6-monooxygenase;
Pssm-ID: 181262 [Multi-domain] Cd Length: 396 Bit Score: 46.95 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 109 RFDNPE--INRNDLRTILLNSLQNDTVIWDR---KLVTLEPDKEKWTLTFEDKPSETADLVIIANGGMSKVRKFVTDTEV 183
Cdd:PRK08163 98 RFGNPYavIHRADIHLSLLEAVLDHPLVEFRtstHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAP 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 184 EETGTFNIQADIhqPEVNCPGFFqlcngnRLMAAhqgnLLFANPNNNgalhfgisfktsdewksktLVDFQDR-----NS 258
Cdd:PRK08163 178 RVTGHVVYRAVI--DVDDMPEDL------RINAP----VLWAGPHCH-------------------LVHYPLRggeqyNL 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 259 VVDFLLKKFSDWDERYKELIRVTSSFVG---LATRIFPLGKSWK-----SKRPL------PITMIGDAAHLMPPFAGQGV 324
Cdd:PRK08163 227 VVTFHSREQEEWGVKDGSKEEVLSYFEGihpRPRQMLDKPTSWKrwataDREPVakwstgRVTLLGDAAHPMTQYMAQGA 306
|
250 260 270
....*....|....*....|....*....|.
gi 441484395 325 NSGLMDALILSDNLtNGKFNSIEEAIENYEQ 355
Cdd:PRK08163 307 CMALEDAVTLGKAL-EGCDGDAEAAFALYES 336
|
|
| PRK07608 |
PRK07608 |
UbiH/UbiF family hydroxylase; |
306-336 |
1.42e-05 |
|
UbiH/UbiF family hydroxylase;
Pssm-ID: 181057 [Multi-domain] Cd Length: 388 Bit Score: 46.87 E-value: 1.42e-05
10 20 30
....*....|....*....|....*....|.
gi 441484395 306 ITMIGDAAHLMPPFAGQGVNSGLMDALILSD 336
Cdd:PRK07608 282 VALVGDAAHLIHPLAGQGMNLGLRDVAALAD 312
|
|
| PRK07208 |
PRK07208 |
hypothetical protein; Provisional |
17-48 |
1.65e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 235967 [Multi-domain] Cd Length: 479 Bit Score: 46.81 E-value: 1.65e-05
10 20 30
....*....|....*....|....*....|..
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERD 48
Cdd:PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD 36
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
17-67 |
1.76e-05 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 46.36 E-value: 1.76e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERDkDRdariFGGTLDLHRDSG 67
Cdd:COG1232 2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLEAS-DR----VGGLIRTVEVDG 47
|
|
| PRK11749 |
PRK11749 |
dihydropyrimidine dehydrogenase subunit A; Provisional |
15-47 |
2.25e-05 |
|
dihydropyrimidine dehydrogenase subunit A; Provisional
Pssm-ID: 236967 [Multi-domain] Cd Length: 457 Bit Score: 46.33 E-value: 2.25e-05
10 20 30
....*....|....*....|....*....|...
gi 441484395 15 SDKNVAIIGGGPVGLTMAKLLQQNGVDATVYER 47
Cdd:PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEA 171
|
|
| PRK08013 |
PRK08013 |
oxidoreductase; Provisional |
308-338 |
2.29e-05 |
|
oxidoreductase; Provisional
Pssm-ID: 236139 [Multi-domain] Cd Length: 400 Bit Score: 46.19 E-value: 2.29e-05
10 20 30
....*....|....*....|....*....|.
gi 441484395 308 MIGDAAHLMPPFAGQGVNSGLMDALILSDNL 338
Cdd:PRK08013 286 LVGDAAHTIHPLAGQGVNLGFMDAAELIAEL 316
|
|
| PRK08850 |
PRK08850 |
2-octaprenyl-6-methoxyphenol hydroxylase; Validated |
18-338 |
2.29e-05 |
|
2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Pssm-ID: 236341 [Multi-domain] Cd Length: 405 Bit Score: 46.30 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 18 NVAIIGGGPVGLTMAKLLQQNGVDATVYErdkdrdARIFGGTLDLHRDSGQEAMKRA------------GLLQTYYDLAL 85
Cdd:PRK08850 6 DVAIIGGGMVGLALAAALKESDLRIAVIE------GQLPEEALNELPDVRVSALSRSsehilrnlgawqGIEARRAAPYI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 86 PMGVNIADEKGNIlttknvkpenRFDNPEINRNDL------RTILL------NSLQNDTVIWDRKLVTLE-PDKEKWtLT 152
Cdd:PRK08850 80 AMEVWEQDSFARI----------EFDAESMAQPDLghivenRVIQLalleqvQKQDNVTLLMPARCQSIAvGESEAW-LT 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 153 FEDKPSETADLVIIANGGMSKVRKfvtdteveetgtfniQADI--------HQPEV-NCPGFFQLCNGNRLMAAHQGNLL 223
Cdd:PRK08850 149 LDNGQALTAKLVVGADGANSWLRR---------------QMDIplthwdygHSALVaNVRTVDPHNSVARQIFTPQGPLA 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 224 F---ANPNnngalhfgisfKTSDEW-----KSKTLVDFQDrnsvVDFLLKKFSDWDERYKeLIRVtssfVGlATRIFPL- 294
Cdd:PRK08850 214 FlpmSEPN-----------MSSIVWsteplRAEALLAMSD----EQFNKALTAEFDNRLG-LCEV----VG-ERQAFPLk 272
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 441484395 295 ---GKSWKSKRplpITMIGDAAHLMPPFAGQGVNSGLMDALILSDNL 338
Cdd:PRK08850 273 mryARDFVRER---VALVGDAAHTIHPLAGQGVNLGLLDAASLAQEI 316
|
|
| PRK06185 |
PRK06185 |
FAD-dependent oxidoreductase; |
1-86 |
2.37e-05 |
|
FAD-dependent oxidoreductase;
Pssm-ID: 235729 [Multi-domain] Cd Length: 407 Bit Score: 46.01 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 1 MTMRIDTDkqmnllsdknVAIIGGGPVGLTMAKLLQQNGVDATVYERDKD--RDARifGGTldLHRDSgQEAMKRAGLLQ 78
Cdd:PRK06185 1 MAEVETTD----------CCIVGGGPAGMMLGLLLARAGVDVTVLEKHADflRDFR--GDT--VHPST-LELMDELGLLE 65
|
....*...
gi 441484395 79 TYydLALP 86
Cdd:PRK06185 66 RF--LELP 71
|
|
| trkA |
PRK09496 |
Trk system potassium transporter TrkA; |
17-51 |
5.37e-05 |
|
Trk system potassium transporter TrkA;
Pssm-ID: 236541 [Multi-domain] Cd Length: 453 Bit Score: 45.11 E-value: 5.37e-05
10 20 30
....*....|....*....|....*....|....*
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDR 51
Cdd:PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER 266
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
17-170 |
9.04e-05 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 44.45 E-value: 9.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYER----------------------DKDRDARIFG----------------- 57
Cdd:PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEAdeapaqgasgnrqgalypllskDDNALSRFFRaaflfarrfydalpaag 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 58 --------GTLDLHRDSG----QEAMKRAGLLQtyyDLALPMGVNIADEKGNILTTKN---------VKPenrfdnPEIN 116
Cdd:PRK01747 341 vafdhdwcGVLQLAWDEKsaekIAKMLALGLPA---ELARALDAEEAEELAGLPVPCGgifypqggwLCP------AELC 411
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 441484395 117 RNdlrtiLLNSLQND-TVIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIANGG 170
Cdd:PRK01747 412 RA-----LLALAGQQlTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGH 461
|
|
| PRK08132 |
PRK08132 |
FAD-dependent oxidoreductase; Provisional |
19-338 |
9.08e-05 |
|
FAD-dependent oxidoreductase; Provisional
Pssm-ID: 236158 [Multi-domain] Cd Length: 547 Bit Score: 44.47 E-value: 9.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYERDK-------------------DR---------------DARIFGG-----T 59
Cdd:PRK08132 26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDtlstgsraicfakrsleifDRlgcgermvdkgvswnVGKVFLRdeevyR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 60 LDLHRDSGQeamKRAGL--LQTYY------DLALpmgvniadekgnilttknvkpenrfDNPEInrnDLRtillnslqnd 131
Cdd:PRK08132 106 FDLLPEPGH---RRPAFinLQQYYvegylvERAQ-------------------------ALPNI---DLR---------- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 132 tviWDRKLVTLEPDKEKWTLTFEDkPSET----ADLVIIANGGMSKVRKFVtdtEVEETGT-----FNIqADIhqpevnc 202
Cdd:PRK08132 145 ---WKNKVTGLEQHDDGVTLTVET-PDGPytleADWVIACDGARSPLREML---GLEFEGRtfedrFLI-ADV------- 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 203 pgffqlcngnRLMAAHQGNLLF-----ANPNNNGALHfgisfKTSDE-WKsktlVDFQDRnsvvdfllkkfsdWDE---- 272
Cdd:PRK08132 210 ----------KMKADFPTERWFwfdppFHPGQSVLLH-----RQPDNvWR----IDFQLG-------------WDAdpea 257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 273 ---------RYKELIRVTSSF----VGLAT----RI--FPLGKswkskrplpITMIGDAAHLMPPFAGQGVNSGLMDAli 333
Cdd:PRK08132 258 ekkpenvipRVRALLGEDVPFelewVSVYTfqcrRMdrFRHGR---------VLFAGDAAHQVSPFGARGANSGIQDA-- 326
|
....*
gi 441484395 334 lsDNL 338
Cdd:PRK08132 327 --DNL 329
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
24-176 |
1.18e-04 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 43.42 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 24 GGPVGLTMAKLLQQNGVDATVYERDKDRDARIFGG-----TLDLHRDSG-QEAMKRAgllQTYYDLALPMG--VNIADEK 95
Cdd:COG0644 1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKICGGgllprALEELEPLGlDEPLERP---VRGARFYSPGGksVELPPGR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 96 GNILTtknvkpenrfdnpeINRNDLRTILLNSLQND--TVIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIANGGMSK 173
Cdd:COG0644 78 GGGYV--------------VDRARFDRWLAEQAEEAgaEVRTGTRVTDVLRDDGRVVVRTGDGEEIRADYVVDADGARSL 143
|
...
gi 441484395 174 VRK 176
Cdd:COG0644 144 LAR 146
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
18-69 |
2.28e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 42.95 E-value: 2.28e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 441484395 18 NVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDrdariFGGTLDLHRDSGQE 69
Cdd:PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ-----LGGLAASFEFGGLP 47
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
21-47 |
3.02e-04 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 38.67 E-value: 3.02e-04
10 20
....*....|....*....|....*..
gi 441484395 21 IIGGGPVGLTMAKLLQQNGVDATVYER 47
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEK 27
|
|
| PRK07538 |
PRK07538 |
hypothetical protein; Provisional |
19-46 |
3.22e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 236046 [Multi-domain] Cd Length: 413 Bit Score: 42.58 E-value: 3.22e-04
10 20
....*....|....*....|....*...
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYE 46
Cdd:PRK07538 3 VLIAGGGIGGLTLALTLHQRGIEVVVFE 30
|
|
| PRK07333 |
PRK07333 |
ubiquinone biosynthesis hydroxylase; |
290-331 |
3.45e-04 |
|
ubiquinone biosynthesis hydroxylase;
Pssm-ID: 180935 [Multi-domain] Cd Length: 403 Bit Score: 42.27 E-value: 3.45e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 441484395 290 RIFPLG----KSWKSKRplpITMIGDAAHLMPPFAGQGVNSGLMDA 331
Cdd:PRK07333 265 RAFPLGltlaRSFVAPR---FALVGDAAHGIHPIAGQGLNLGLKDV 307
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
17-174 |
3.64e-04 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 41.92 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYErdkDRDARIFGG-----TLDLHRDSGQEAMKRAGLLQTYYDLALPMGVNI 91
Cdd:pfam07992 1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIE---DEGTCPYGGcvlskALLGAAEAPEIASLWADLYKRKEEVVKKLNNGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 92 AdekgnILTTKNVKpenrfdnpeinrndlrtillnslqndTVIWDRKLVTLEPDKEKWTLTFedkpseTADLVIIANGGM 171
Cdd:pfam07992 78 E-----VLLGTEVV--------------------------SIDPGAKKVVLEELVDGDGETI------TYDRLVIATGAR 120
|
...
gi 441484395 172 SKV 174
Cdd:pfam07992 121 PRL 123
|
|
| PRK08773 |
PRK08773 |
UbiH/UbiF family hydroxylase; |
11-334 |
4.19e-04 |
|
UbiH/UbiF family hydroxylase;
Pssm-ID: 181552 [Multi-domain] Cd Length: 392 Bit Score: 42.16 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 11 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGVD-ATVYERDKDR------DARIFGGTLD---LHRDSGQEAMKRAGLLQTY 80
Cdd:PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSvALVEGREPPRwqadqpDLRVYAFAADnaaLLDRLGVWPAVRAARAQPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 81 YDLalpmgvNIADEKGNilttknvkPENRFDNPEINRNDLRTILLNSLQNDTViWDR------------KLVTLEPDKEK 148
Cdd:PRK08773 81 RRM------RVWDAGGG--------GELGFDADTLGREQLGWIVENDLLVDRL-WAAlhaagvqlhcpaRVVALEQDADR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 149 WTLTFEDKPSETADLVIIANGGMSKVRKfVTDTEVEetgtfniQADIHQPEVncPGFFQLCNGNRLMAAHQ----GNLLF 224
Cdd:PRK08773 146 VRLRLDDGRRLEAALAIAADGAASTLRE-LAGLPVS-------RHDYAQRGV--VAFVDTEHPHQATAWQRflptGPLAL 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 225 AnPNNNGalhfgisfKTSDEWkskTLVDfQDRNSVVDFLLKKFSdwderyKEL----------IRVTSSFVGlatriFPL 294
Cdd:PRK08773 216 L-PFADG--------RSSIVW---TLPD-AEAERVLALDEAAFS------RELtqafaarlgeVRVASPRTA-----FPL 271
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 441484395 295 GKSW-KSKRPLPITMIGDAAHLMPPFAGQGVNSGLMDALIL 334
Cdd:PRK08773 272 RRQLvQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAAL 312
|
|
| ubiF |
PRK08020 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed |
287-342 |
4.68e-04 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Pssm-ID: 181199 [Multi-domain] Cd Length: 391 Bit Score: 41.89 E-value: 4.68e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 441484395 287 LATRIFPLGKSWKSKRPLP-ITMIGDAAHLMPPFAGQGVNSGLMDALILSDNLTNGK 342
Cdd:PRK08020 263 VAAGAFPLTRRHALQYVQPgLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNAR 319
|
|
| threonine_DH_like |
cd08234 |
L-threonine dehydrogenase; L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent ... |
18-51 |
5.56e-04 |
|
L-threonine dehydrogenase; L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Pssm-ID: 176196 [Multi-domain] Cd Length: 334 Bit Score: 41.74 E-value: 5.56e-04
10 20 30
....*....|....*....|....*....|....*
gi 441484395 18 NVAIIGGGPVGLTMAKLLQQNGVDA-TVYERDKDR 51
Cdd:cd08234 162 SVLVFGAGPIGLLLAQLLKLNGASRvTVAEPNEEK 196
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
19-48 |
7.15e-04 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 41.43 E-value: 7.15e-04
10 20 30
....*....|....*....|....*....|
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYERD 48
Cdd:COG0665 5 VVVIGGGIAGLSTAYHLARRGLDVTVLERG 34
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
17-68 |
8.51e-04 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 41.38 E-value: 8.51e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERdkdrdARIFGG--------TLDLHRDSGQ 68
Cdd:COG3349 4 PRVVVVGGGLAGLAAAVELAEAGFRVTLLEA-----RPRLGGrarsfpdpDTGLPIDNGQ 58
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
16-58 |
1.02e-03 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 41.06 E-value: 1.02e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 441484395 16 DKNVAIIGGGPVGLTMAKLLQQNGVDATVYE-RDkdrdaRIfGG 58
Cdd:COG1231 7 GKDVVIVGAGLAGLAAARELRKAGLDVTVLEaRD-----RV-GG 44
|
|
| PRK07364 |
PRK07364 |
FAD-dependent hydroxylase; |
1-339 |
1.03e-03 |
|
FAD-dependent hydroxylase;
Pssm-ID: 236001 [Multi-domain] Cd Length: 415 Bit Score: 40.77 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 1 MTMRIDTDKQMNLLSDknVAIIGGGPVGLTMAKLLQQNG-----VDATVYERDKDRD---------ARIFGGtldlhrds 66
Cdd:PRK07364 5 AATSPTLPSTRSLTYD--VAIVGGGIVGLTLAAALKDSGlrialIEAQPAEAAAAKGqayalsllsARIFEG-------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 67 gqeamkragllqtyydlalpMGV--NIADEKGN----ILTTKNVKPENRFdnpeiNRNDLRT----------ILLNSLQN 130
Cdd:PRK07364 75 --------------------IGVweKILPQIGKfrqiRLSDADYPGVVKF-----QPTDLGTealgyvgehqVLLEALQE 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 131 -----DTVIWDR--KLVTLEPDKEKWTLTFEDKPSE---TADLVIIANGGMSKVRkfvtdtevEETGtfnIQADIHQPEV 200
Cdd:PRK07364 130 flqscPNITWLCpaEVVSVEYQQDAATVTLEIEGKQqtlQSKLVVAADGARSPIR--------QAAG---IKTKGWKYWQ 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 201 NCPGFFqlcngnrlmAAHQgnllfaNPNNNGALH-------FGISFKTSDE----W-----KSKTLVDFQDRnsvvDFLL 264
Cdd:PRK07364 199 SCVTAT---------VKHE------APHNDIAYErfwpsgpFAILPLPGNRcqivWtaphaQAKALLALPEA----EFLA 259
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 441484395 265 KKFSDWDERYKELIRVTSSFVglatriFPL----GKSWKSKRplpITMIGDAAHLMPPFAGQGVNSGLMDALILSDNLT 339
Cdd:PRK07364 260 ELQQRYGDQLGKLELLGDRFL------FPVqlmqSDRYVQHR---LALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQ 329
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
19-50 |
1.05e-03 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 40.84 E-value: 1.05e-03
10 20 30
....*....|....*....|....*....|..
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYERDKD 50
Cdd:pfam01266 2 VVVIGGGIVGLSTAYELARRGLSVTLLERGDD 33
|
|
| PRK12814 |
PRK12814 |
putative NADPH-dependent glutamate synthase small subunit; Provisional |
15-46 |
1.37e-03 |
|
putative NADPH-dependent glutamate synthase small subunit; Provisional
Pssm-ID: 139246 [Multi-domain] Cd Length: 652 Bit Score: 40.87 E-value: 1.37e-03
10 20 30
....*....|....*....|....*....|..
gi 441484395 15 SDKNVAIIGGGPVGLTMAKLLQQNGVDATVYE 46
Cdd:PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFD 223
|
|
| PRK09126 |
PRK09126 |
FAD-dependent hydroxylase; |
19-47 |
1.44e-03 |
|
FAD-dependent hydroxylase;
Pssm-ID: 236385 [Multi-domain] Cd Length: 392 Bit Score: 40.31 E-value: 1.44e-03
10 20
....*....|....*....|....*....
gi 441484395 19 VAIIGGGPVGLTMAKLLQQNGVDATVYER 47
Cdd:PRK09126 6 IVVVGAGPAGLSFARSLAGSGLKVTLIER 34
|
|
| COG1233 |
COG1233 |
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ... |
15-58 |
2.05e-03 |
|
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 40.22 E-value: 2.05e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 441484395 15 SDKNVAIIGGGPVGLTMAKLLQQNGVDATVYERdkdrdARIFGG 58
Cdd:COG1233 2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEK-----NDTPGG 40
|
|
| PRK08849 |
PRK08849 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional |
106-354 |
2.80e-03 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Pssm-ID: 181564 [Multi-domain] Cd Length: 384 Bit Score: 39.37 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 106 PE--NRFDNPEINRNDLRTILLNSL------------QNDTVIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIANGGM 171
Cdd:PRK08849 87 PEcrTRFHSDELNLDQLGYIVENRLiqlglwqqfaqyPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGAN 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 172 SKVRKF----VTDTEVEETGTF-NIQADIHQPEVNCPGFFQlcNGNRL---MAAHQGNLL-FANPNNNGALhfgisfkts 242
Cdd:PRK08849 167 SQVRQLagigITAWDYRQHCMLiNVETEQPQQDITWQQFTP--SGPRSflpLCGNQGSLVwYDSPKRIKQL--------- 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 243 dewksKTLVDFQDRNSVVDFLLKKFSDWderykELIRVTSsfvglatriFPL----GKSWKSKRplpITMIGDAAHLMPP 318
Cdd:PRK08849 236 -----SAMNPEQLRSEILRHFPAELGEI-----KVLQHGS---------FPLtrrhAQQYVKNN---CVLLGDAAHTINP 293
|
250 260 270
....*....|....*....|....*....|....*..
gi 441484395 319 FAGQGVNSGLMD-ALILSDNLTNGKFNsiEEAIENYE 354
Cdd:PRK08849 294 LAGQGVNLGFKDvDVLLAETEKQGVLN--DASFARYE 328
|
|
| NAD_binding_7 |
pfam13241 |
Putative NAD(P)-binding; This domain is found in fungi, plants, archaea and bacteria. |
14-65 |
2.84e-03 |
|
Putative NAD(P)-binding; This domain is found in fungi, plants, archaea and bacteria.
Pssm-ID: 433055 [Multi-domain] Cd Length: 104 Bit Score: 37.07 E-value: 2.84e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 441484395 14 LSDKNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDRDARifgGTLDLHRD 65
Cdd:pfam13241 5 LRGKRVLVVGGGEVAARKARKLLEAGAKVTVVSPEITPFLE---GLLDLIRR 53
|
|
| MnmC_Cterm |
TIGR03197 |
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In ... |
121-169 |
2.98e-03 |
|
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 274478 [Multi-domain] Cd Length: 381 Bit Score: 39.56 E-value: 2.98e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 441484395 121 RTILLNSLQNDTVIWDRKLVTLEPDKEKWTLTFEDKPSETADLVIIANG 169
Cdd:TIGR03197 139 RALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANG 187
|
|
| PRK12831 |
PRK12831 |
putative oxidoreductase; Provisional |
16-46 |
4.02e-03 |
|
putative oxidoreductase; Provisional
Pssm-ID: 183780 [Multi-domain] Cd Length: 464 Bit Score: 39.23 E-value: 4.02e-03
10 20 30
....*....|....*....|....*....|.
gi 441484395 16 DKNVAIIGGGPVGLTMAKLLQQNGVDATVYE 46
Cdd:PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFE 170
|
|
| FadH2 |
COG0446 |
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ... |
17-47 |
4.08e-03 |
|
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];
Pssm-ID: 440215 [Multi-domain] Cd Length: 322 Bit Score: 38.64 E-value: 4.08e-03
10 20 30
....*....|....*....|....*....|.
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYER 47
Cdd:COG0446 125 KRAVVIGGGPIGLELAEALRKRGLKVTLVER 155
|
|
| PRK13984 |
PRK13984 |
putative oxidoreductase; Provisional |
16-46 |
4.37e-03 |
|
putative oxidoreductase; Provisional
Pssm-ID: 172486 [Multi-domain] Cd Length: 604 Bit Score: 38.98 E-value: 4.37e-03
10 20 30
....*....|....*....|....*....|.
gi 441484395 16 DKNVAIIGGGPVGLTMAKLLQQNGVDATVYE 46
Cdd:PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYE 313
|
|
| PRK12771 |
PRK12771 |
putative glutamate synthase (NADPH) small subunit; Provisional |
17-49 |
4.48e-03 |
|
putative glutamate synthase (NADPH) small subunit; Provisional
Pssm-ID: 237198 [Multi-domain] Cd Length: 564 Bit Score: 39.09 E-value: 4.48e-03
10 20 30
....*....|....*....|....*....|...
gi 441484395 17 KNVAIIGGGPVGLTMAKLLQQNGVDATVYERDK 49
Cdd:PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170
|
|
| PRK07494 |
PRK07494 |
UbiH/UbiF family hydroxylase; |
16-336 |
4.90e-03 |
|
UbiH/UbiF family hydroxylase;
Pssm-ID: 181001 [Multi-domain] Cd Length: 388 Bit Score: 38.73 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 16 DKNVAIIGGGPVGLTMAKLLQQNGVDATVYERDKDR-DARifggTLDLHRDSgQEAMKRAGLLQTYYDLALPMGV-NIAD 93
Cdd:PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYaDLR----TTALLGPS-IRFLERLGLWARLAPHAAPLQSmRIVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 94 EKGNILttknVKPENRFDNPEI----------NRNdLRTILLNSL-QNDTVIW-DRKLVTLEPDKEKWTLTFEDKPSETA 161
Cdd:PRK07494 82 ATGRLI----RAPEVRFRAAEIgedafgynipNWL-LNRALEARVaELPNITRfGDEAESVRPREDEVTVTLADGTTLSA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 162 DLVIIANGGMSKVRKF----VTDTEVEETG-TFNIqadihqpevncpgffqlcngnrlmaAHqgnllfANPNNNgalhfg 236
Cdd:PRK07494 157 RLVVGADGRNSPVREAagigVRTWSYPQKAlVLNF-------------------------TH------SRPHQN------ 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 441484395 237 isfkTSDEWKSK----TLVDF-QDRNSVVdfllkkfsdWDERYKELIRVTS---------------SFVG---LATRI-- 291
Cdd:PRK07494 200 ----VSTEFHTEggpfTQVPLpGRRSSLV---------WVVRPAEAERLLAlsdaalsaaieermqSMLGkltLEPGRqa 266
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 441484395 292 FPLGkswkSKRPLP-----ITMIGDAAHLMPPFAGQGVNSGLMDALILSD 336
Cdd:PRK07494 267 WPLS----GQVAHRfaagrTALVGEAAHVFPPIGAQGLNLGLRDVATLVE 312
|
|
| PLN02172 |
PLN02172 |
flavin-containing monooxygenase FMO GS-OX |
12-49 |
5.48e-03 |
|
flavin-containing monooxygenase FMO GS-OX
Pssm-ID: 215116 [Multi-domain] Cd Length: 461 Bit Score: 38.69 E-value: 5.48e-03
10 20 30
....*....|....*....|....*....|....*...
gi 441484395 12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGVDATVYERDK 49
Cdd:PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43
|
|
| PRK06834 |
PRK06834 |
hypothetical protein; Provisional |
310-334 |
5.81e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235870 [Multi-domain] Cd Length: 488 Bit Score: 38.46 E-value: 5.81e-03
10 20
....*....|....*....|....*
gi 441484395 310 GDAAHLMPPFAGQGVNSGLMDALIL 334
Cdd:PRK06834 271 GDAAHVHSPVGGQGLNTGVQDAVNL 295
|
|
| NAD_bind_amino_acid_DH |
cd05191 |
NAD(P) binding domain of amino acid dehydrogenase-like proteins; Amino acid dehydrogenase(DH) ... |
12-50 |
6.79e-03 |
|
NAD(P) binding domain of amino acid dehydrogenase-like proteins; Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts.
Pssm-ID: 133449 [Multi-domain] Cd Length: 86 Bit Score: 35.43 E-value: 6.79e-03
10 20 30
....*....|....*....|....*....|....*....
gi 441484395 12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGVdATVYERDKD 50
Cdd:cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGG-KKVVLCDRD 56
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
5-57 |
7.37e-03 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 38.07 E-value: 7.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 441484395 5 IDTDKQMNL-LSDKNVAIIGGGPVGLTMAKLLQQNGVDATVYERdKDRDARIFG 57
Cdd:pfam07992 140 LDSAEALRLkLLPKRVVVVGGGYIGVELAAALAKLGKEVTLIEA-LDRLLRAFD 192
|
|
| PRK06184 |
PRK06184 |
hypothetical protein; Provisional |
310-331 |
8.02e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235728 [Multi-domain] Cd Length: 502 Bit Score: 38.04 E-value: 8.02e-03
|
| |
