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Conserved domains on  [gi|440655464|gb|AGC22357|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Paramastax nigra]

Protein Classification

NADH dehydrogenase subunit 4L( domain architecture ID 10009597)

NADH dehydrogenase subunit 4L is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 4-91 8.27e-17

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177218  Cd Length: 89  Bit Score: 68.64  E-value: 8.27e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655464  4 LSIMILFFIYFSGLYVFCFMRNHLLLVLLSLGYMVISLFFMIILYLSLYNYILYFVIFYLVISVCEGALALSILVSMIRC 83
Cdd:MTH00162  2 MMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIRS 81


                ....*...
gi 440655464 84 YGNDFFGS 91
Cdd:MTH00162 82 HGNDYFSS 89
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 4-91 8.27e-17

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 68.64  E-value: 8.27e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655464  4 LSIMILFFIYFSGLYVFCFMRNHLLLVLLSLGYMVISLFFMIILYLSLYNYILYFVIFYLVISVCEGALALSILVSMIRC 83
Cdd:MTH00162  2 MMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIRS 81


                ....*...
gi 440655464 84 YGNDFFGS 91
Cdd:MTH00162 82 HGNDYFSS 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-94 4.36e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 33.31  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655464   1 MFSLSIMILFFIYFSGLyvfcFMRNHLLLVLLSLGYMVISLFFMIILYLSLYNYIL--YFVIFYLVISVCEGALALSILV 78
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGL----LLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLV 76

                         90
                 ....*....|....*.
gi 440655464  79 SMIRCYGNDFFGSFSL 94
Cdd:pfam00420 77 RIYRTHGTDDVDSLNL 92
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 4-91 8.27e-17

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 68.64  E-value: 8.27e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655464  4 LSIMILFFIYFSGLYVFCFMRNHLLLVLLSLGYMVISLFFMIILYLSLYNYILYFVIFYLVISVCEGALALSILVSMIRC 83
Cdd:MTH00162  2 MMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIRS 81


                ....*...
gi 440655464 84 YGNDFFGS 91
Cdd:MTH00162 82 HGNDYFSS 89
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-97 5.93e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 43.68  E-value: 5.93e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655464  1 MFSLSIMILFFIYFSGLYVFCFMRNHLLLVLLSLGYMVISLFFMIILYLSLYNYILYFVIFYLVISVCEGALALSILVSM 80
Cdd:MTH00149  1 SMFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLFLIILTFGACEASLGLSLLVSL 80

                        90
                ....*....|....*..
gi 440655464 81 IRCYGNDFFGSFSLSLC 97
Cdd:MTH00149 81 IRLHGNDYVSSLSSLKF 97
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-97 2.34e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 39.57  E-value: 2.34e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655464  1 MFSLSIMILFFIYFSGLYVFCFMRNHLLLVLLSLGYMVISLFFMIILYLSLYNYILYFVIFYLVISVCEGALALSILVSM 80
Cdd:MTH00188  1 MFFSMILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLSLVLLTFAACEASVGLALLVSL 80

                        90
                ....*....|....*..
gi 440655464 81 IRCYGNDFFGSFSLSLC 97
Cdd:MTH00188 81 IRSHGSDYVSSLNLIKC 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-94 4.36e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 33.31  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655464   1 MFSLSIMILFFIYFSGLyvfcFMRNHLLLVLLSLGYMVISLFFMIILYLSLYNYIL--YFVIFYLVISVCEGALALSILV 78
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGL----LLRRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLV 76

                         90
                 ....*....|....*.
gi 440655464  79 SMIRCYGNDFFGSFSL 94
Cdd:pfam00420 77 RIYRTHGTDDVDSLNL 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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