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Conserved domains on  [gi|440655424|gb|AGC22320|]
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cytochrome b (mitochondrion) [Lentula callani]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 689.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  15 IKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMF 94
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  95 FIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAV 174
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 175 DNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLCLINPYLL 254
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 255 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQILFWIMVV 334
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 440655424 335 VVILLTWIGKRPVEEPFILTGQILTSIYFTYFLINP 370
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 689.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  15 IKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMF 94
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  95 FIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAV 174
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 175 DNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLCLINPYLL 254
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 255 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQILFWIMVV 334
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 440655424 335 VVILLTWIGKRPVEEPFILTGQILTSIYFTYFLINP 370
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-368 9.02e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.87  E-value: 9.02e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  15 IKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMF 94
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  95 FIAMYLHVGRGIYYGSYMY---INtWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGG 171
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKpreLN-WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 172 FAVDNATLNRFFSFH-FVLPFIISAMVMIHLLFLHQTGSNNPLG----LNSNIEKIPFHPYFTFKDLITFVIMtsgLIML 246
Cdd:COG1290  179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVF---LGVF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 247 CLINPYL-LGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:COG1290  256 ALLAFFFpINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPveEPFILTGQILTSIYFTYFLI 368
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 13-210 1.45e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.07  E-value: 1.45e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  13 PLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGAS 92
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  93 MFFIAMYLHVGRGIYYGSYM--YINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWG 170
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 440655424 171 GFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSN 210
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
22-208 8.03e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.05  E-value: 8.03e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   22 LIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMFFIAMYLH 101
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  102 VGRGIYYG--SYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAVDNATL 179
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 440655424  180 NRFFSFHFVLPFIISAMVMIHLLFLHQTG 208
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-353 4.25e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 4.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  243 LIMLCLINPYLLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKK-SSFRGIQF 321
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125

                          90       100       110
                  ....*....|....*....|....*....|..
gi 440655424  322 YPINQILFWIMVVVVILLTWIGKRPVEEPFIL 353
Cdd:TIGR01156 126 RPVATTVFLFGTVVALWLGIGATLPIDKSLTL 157
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 689.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  15 IKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMF 94
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  95 FIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAV 174
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 175 DNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLCLINPYLL 254
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 255 GDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQILFWIMVV 334
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 440655424 335 VVILLTWIGKRPVEEPFILTGQILTSIYFTYFLINP 370
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 4-382 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 624.62  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   4 MNKSFRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWII 83
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  84 RTLHANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLD 163
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 164 LVQWVWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGL 243
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 244 IMLCLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLINPHVNNLWDNIIKY 382
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILDY 379
CYTB MTH00119
cytochrome b; Provisional
 4-382 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 605.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   4 MNKSFRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWII 83
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  84 RTLHANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLD 163
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 164 LVQWVWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGL 243
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 244 IMLCLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLI-NPHVNNLWDNIIKY 382
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 7-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 601.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   7 SFRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTL 86
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  87 HANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQ 166
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 167 WVWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIML 246
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 247 CLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQ 326
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 440655424 327 ILFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00191
cytochrome b; Provisional
 8-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 599.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   8 FRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLH 87
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  88 ANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQW 167
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 168 VWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLC 247
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 248 LINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQI 327
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 440655424 328 LFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 9-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 592.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   9 RLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHA 88
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  89 NGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWV 168
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 169 WGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLCL 248
Cdd:MTH00100 165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 249 INPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQIL 328
Cdd:MTH00100 245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCL 324

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 440655424 329 FWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00100 325 FWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00016
cytochrome b; Validated
 4-381 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 588.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   4 MNKSFRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWII 83
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  84 RTLHANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLD 163
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 164 LVQWVWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGL 243
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 244 IMLCLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLINPHVNNLWDNIIK 381
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00074
cytochrome b; Provisional
 4-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 588.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   4 MNKSFRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWII 83
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  84 RTLHANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLD 163
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 164 LVQWVWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGL 243
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 244 IMLCLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLINPHVNNLWDN 378
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLEN 375
CYTB MTH00034
cytochrome b; Validated
 9-368 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 544.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   9 RLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHA 88
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  89 NGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWV 168
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 169 WGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLCL 248
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 249 INPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQIL 328
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 440655424 329 FWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00034 325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 4-381 0e+00

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 526.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   4 MNKSFRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWII 83
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  84 RTLHANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLD 163
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 164 LVQWVWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGL 243
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 244 IMLCLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLINPHVNNLWDNIIK 381
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 8-368 1.23e-174

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.14  E-value: 1.23e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   8 FRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLH 87
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  88 ANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQW 167
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 168 VWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLC 247
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 248 LINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQI 327
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 440655424 328 LFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 4-368 5.76e-173

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 486.91  E-value: 5.76e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   4 MNKSFRLKHPLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWII 83
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  84 RTLHANGASMFFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLD 163
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 164 LVQWVWGGFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGL 243
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 244 IMLCLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPVEEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 20-368 1.16e-132

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 385.06  E-value: 1.16e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  20 NSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMFFIAMY 99
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 100 LHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAVDNATL 179
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 180 NRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTsGLIMLCLINPY---LLGD 256
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILF-GVFVIIGIEPRietLLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 257 PDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQILFWIMVVVV 336
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350
                 ....*....|....*....|....*....|...
gi 440655424 337 ILLTWIGKRPV-EEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 16-368 2.50e-126

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 367.73  E-value: 2.50e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  16 KIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMFF 95
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  96 IAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAVD 175
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 176 NATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSgLIMLCLINPYLLG 255
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 256 DPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKkssFRGIQFYPINQILFWIMVVV 335
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|...
gi 440655424 336 VILLTWIGKRPVEEPFILTGQILTSIYFTYFLI 368
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-368 9.02e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.87  E-value: 9.02e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  15 IKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMF 94
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  95 FIAMYLHVGRGIYYGSYMY---INtWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGG 171
Cdd:COG1290  100 FAAVYLHMFRGFFYGAYKKpreLN-WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 172 FAVDNATLNRFFSFH-FVLPFIISAMVMIHLLFLHQTGSNNPLG----LNSNIEKIPFHPYFTFKDLITFVIMtsgLIML 246
Cdd:COG1290  179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVF---LGVF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 247 CLINPYL-LGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALFMSISILMILPFYKKSSFRGIQFYP 323
Cdd:COG1290  256 ALLAFFFpINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 440655424 324 INQILFWIMVVVVILLTWIGKRPveEPFILTGQILTSIYFTYFLI 368
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 13-210 1.45e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.07  E-value: 1.45e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  13 PLIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGAS 92
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  93 MFFIAMYLHVGRGIYYGSYM--YINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWG 170
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 440655424 171 GFAVDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSN 210
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 14-357 1.40e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.06  E-value: 1.40e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  14 LIKIINNSLIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASM 93
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  94 FFIAMYLHVGRGIYYGSYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFA 173
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 174 VDNATLNRFFSFHFVLPFIISAMVMIHLLFLHQTGSNNPLGLNSNI-EKIPFHPYFTFKDLITFVIMTSGLIMLCLINPY 252
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 253 LLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLFMSISILMILPFYKKSSFRGIqfypINQILFWIM 332
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                        330       340
                 ....*....|....*....|....*
gi 440655424 333 VVVVILLTWIGKRPVEEPFILTGQI 357
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQL 340
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
22-208 8.03e-78

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 238.05  E-value: 8.03e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   22 LIDLPAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMFFIAMYLH 101
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  102 VGRGIYYG--SYMYINTWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAVDNATL 179
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 440655424  180 NRFFSFHFVLPFIISAMVMIHLLFLHQTG 208
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 211-357 3.15e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 160.50  E-value: 3.15e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 211 NPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLCLINPYLLGDPDNFVPANPLVTPIHIQPEWYFLFAYAILRSIPN 290
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 440655424 291 KLGGVIALFMSISILMILPFYKKSSFRGiQFYPINQILFWIMVVVVILLTWIGKRPVEEPFILTGQI 357
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
92-257 6.78e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.40  E-value: 6.78e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424   92 SMFFIAMYLHVGRGIYYGSYMYIN--TWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVW 169
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  170 GGFAVDNATLNRFFSFHF-VLPFIISAMVMIHLLFLHQTGSNNPLGLNSNIEKIPFHPYFTFKDLITFVIMTSGLIMLCL 248
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 440655424  249 INPYLLGDP 257
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
262-362 1.73e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.77  E-value: 1.73e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  262 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKKSSFRGIQFYPINQILFWIMVVVVILLTW 341
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 440655424  342 IGKRPVEEPFILTGQILTSIY 362
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 26-213 3.07e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 136.77  E-value: 3.07e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  26 PAPSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMFFIAMYLHVGRG 105
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 106 IYYGSYMYIN--TWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAVDNATLNRFF 183
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 440655424 184 SFH-FVLPFIISAMVMIHLLFLHQTGSNNPL 213
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 28-213 7.76e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 119.44  E-value: 7.76e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  28 PSNISLWWNYGSLLGLCLMIQIITGLFLAMHYTPNIEMAFNSVIHICRDVNNGWIIRTLHANGASMFFIAMYLHVGRGIY 107
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 108 YGSYMYIN--TWMIGTIIMFMVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYLGLDLVQWVWGGFAVDNATLNRFFSF 185
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 440655424 186 H-FVLPFIISAMVMIHLLFLHQTGSNNPL 213
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 237-353 3.58e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.96  E-value: 3.58e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 237 VIMTS--GLIMLCLINPYLLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKK- 313
Cdd:COG5679   44 VILGTiaLCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENv 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 440655424 314 SSFRGIQFYPINQILFWIMVVVVILLTWIGKRPVEEPFIL 353
Cdd:COG5679  119 NKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-353 4.25e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 4.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424  243 LIMLCLINPYLLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMILPFYKK-SSFRGIQF 321
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125

                          90       100       110
                  ....*....|....*....|....*....|..
gi 440655424  322 YPINQILFWIMVVVVILLTWIGKRPVEEPFIL 353
Cdd:TIGR01156 126 RPVATTVFLFGTVVALWLGIGATLPIDKSLTL 157
petD CHL00058
cytochrome b6/f complex subunit IV
 233-339 5.73e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.70  E-value: 5.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655424 233 LITFVIMTSGLIMLC----LINPYLLGDPdnfvpANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALFMSISILMIL 308
Cdd:CHL00058  37 LYIFPVVILGTIACNvglaVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTV 111

                         90       100       110
                 ....*....|....*....|....*....|..
gi 440655424 309 PFYKK-SSFRGIQFYPINQILFWIMVVVVILL 339
Cdd:CHL00058 112 PFLENvNKFQNPFRRPVATTVFLIGTAVALWL 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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