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Conserved domains on  [gi|440655396|gb|AGC22294|]
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cytochrome b (mitochondrion) [Trachytettix bufo]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-365 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 658.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  11 IKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  91 FICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 171 SNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIISLKTPYIL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 251 GDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQIMFWSMTT 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 440655396 331 TVILLTWIGKQPVEEPFITTGQTLTMIYFSFFLTN 365
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 658.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  11 IKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  91 FICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 171 SNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIISLKTPYIL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 251 GDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQIMFWSMTT 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 440655396 331 TVILLTWIGKQPVEEPFITTGQTLTMIYFSFFLTN 365
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-363 1.14e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.48  E-value: 1.14e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  16 NSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFFICMY 95
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  96 LHVGRGLYYSSFllKE----TWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVS 171
Cdd:COG1290  105 LHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 172 NPTLSRFFSLH-FIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEK----INFHPFFTFKDLITMIILMMFLLIISLKT 246
Cdd:COG1290  183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 247 PyiLGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQIM 324
Cdd:COG1290  263 P--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 440655396 325 FWSMTTTVILLTWIGKQPveEPFITTGQTLTMIYFSFFL 363
Cdd:COG1290  341 GVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.28e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.61  E-value: 3.28e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   9 PVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  89 MFFICMYLHVGRGLYYSSF--LLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 440655396 167 GFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.48e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.58  E-value: 1.48e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   18 LIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFFICMYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   98 VGRGLYYSSF--LLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVSNPTL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 440655396  176 SRFFSLHFIMPFIIMAMTMMHLIFLHQTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 232-339 4.48e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 4.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  232 MIILMMFLLIISLKT--PYILGDPdnfipANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMP-LYN 308
Cdd:TIGR01156  42 VVILGTIACVVGLAVldPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIEN 116

                          90       100       110
                  ....*....|....*....|....*....|.
gi 440655396  309 KSKFQGMQFYPLNQIMFWSMTTTVIlltWIG 339
Cdd:TIGR01156 117 VNKFQNPFRRPVATTVFLFGTVVAL---WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 11-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 658.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  11 IKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  91 FICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 171 SNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIISLKTPYIL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 251 GDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQIMFWSMTT 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 440655396 331 TVILLTWIGKQPVEEPFITTGQTLTMIYFSFFLTN 365
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 613.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   1 MKTIRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  81 TMHMNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQM 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 161 VKWIWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLL 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 241 IISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPL 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 440655396 321 NQIMFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFLTNKWASSVWDKIINK 378
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILDY 379
CYTB MTH00119
cytochrome b; Provisional
 4-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 604.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   4 IRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMH 83
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  84 MNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKW 163
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 164 IWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIIS 243
Cdd:MTH00119 165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 244 LKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQI 323
Cdd:MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 440655396 324 MFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFS-FFLTNKWASSVWDKIINK 378
Cdd:MTH00119 325 LFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLLGALENKMLNY 380
CYTB MTH00191
cytochrome b; Provisional
 4-363 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 586.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   4 IRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  84 MNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 164 IWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIIS 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 244 LKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQI 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 440655396 324 MFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFL 360
CYTB MTH00100
cytochrome b; Provisional
 1-363 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 585.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   1 MKTIRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  81 TMHMNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQM 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 161 VKWIWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLL 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 241 IISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 440655396 321 NQIMFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363
CYTB MTH00131
cytochrome b; Provisional
 1-363 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 583.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   1 MKTIRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  81 TMHMNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQM 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 161 VKWIWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLL 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 241 IISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 440655396 321 NQIMFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFL 363
CYTB MTH00074
cytochrome b; Provisional
 1-363 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 579.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   1 MKTIRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  81 TMHMNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQM 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 161 VKWIWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLL 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 241 IISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPL 320
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 440655396 321 NQIMFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFI 364
CYTB MTH00016
cytochrome b; Validated
 1-376 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 568.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   1 MKTIRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  81 TMHMNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQM 160
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 161 VKWIWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLL 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 241 IISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPL 320
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 440655396 321 NQIMFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFLTNKWASSVWDKII 376
Cdd:MTH00016 322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00034
cytochrome b; Validated
 4-363 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 547.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   4 IRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  84 MNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 164 IWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIIS 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 244 LKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQI 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 440655396 324 MFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
CYTB MTH00022
cytochrome b; Validated
 4-363 8.64e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.52  E-value: 8.64e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   4 IRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  84 MNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 164 IWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIIS 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 244 LKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQI 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 440655396 324 MFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFL 362
CYTB MTH00053
cytochrome b; Provisional
 2-363 8.94e-175

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 491.53  E-value: 8.94e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   2 KTIRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRT 81
Cdd:MTH00053   3 KTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRY 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  82 MHMNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMV 161
Cdd:MTH00053  83 LHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 162 KWIWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLI 241
Cdd:MTH00053 163 RWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 242 ISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLN 321
Cdd:MTH00053 243 IVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLS 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 440655396 322 QIMFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00053 323 KILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFL 364
CYTB MTH00224
cytochrome b; Provisional
 2-377 2.10e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 490.59  E-value: 2.10e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   2 KTIRKTHPVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRT 81
Cdd:MTH00224   3 KPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  82 MHMNGASMFFICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMV 161
Cdd:MTH00224  83 IHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 162 KWIWGGFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLI 241
Cdd:MTH00224 163 EWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 242 ISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLN 321
Cdd:MTH00224 243 MVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLN 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 440655396 322 QIMFWSMTTTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFLTNKWASSVWDKIIN 377
Cdd:MTH00224 323 QLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 16-363 1.43e-133

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 386.99  E-value: 1.43e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  16 NSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFFICMY 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  96 LHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVSNPTL 175
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 176 SRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIISL--KTPYILGDP 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDP 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 254 DNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQIMFWSMTTTVI 333
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                        330       340       350
                 ....*....|....*....|....*....|.
gi 440655396 334 LLTWIGKQPV-EEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00033 333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFL 363
CYTB MTH00086
cytochrome b; Provisional
 12-363 2.10e-127

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 370.04  E-value: 2.10e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  12 KMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  92 ICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVS 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 172 NPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFlLIISLKTPYILG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVF-IIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 252 DPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNkskFQGMQFYPLNQIMFWSMTTT 331
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|..
gi 440655396 332 VILLTWIGKQPVEEPFITTGQTLTMIYFSFFL 363
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLIL 348
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-363 1.14e-120

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 354.48  E-value: 1.14e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  16 NSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFFICMY 95
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  96 LHVGRGLYYSSFllKE----TWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVS 171
Cdd:COG1290  105 LHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 172 NPTLSRFFSLH-FIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEK----INFHPFFTFKDLITMIILMMFLLIISLKT 246
Cdd:COG1290  183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 247 PyiLGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQIM 324
Cdd:COG1290  263 P--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 440655396 325 FWSMTTTVILLTWIGKQPveEPFITTGQTLTMIYFSFFL 363
Cdd:COG1290  341 GVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
CYTB MTH00046
cytochrome b; Validated
 11-366 1.55e-86

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 266.08  E-value: 1.55e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  11 IKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMF 90
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  91 FICMYLHVGRGLYYSSFLLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAV 170
Cdd:MTH00046  82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 171 SNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNM-EKINFHPFFTFKDLITMIILMMFLLIISLKTPYI 249
Cdd:MTH00046 162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 250 LGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIaLVASIAILMIMPLYNKSKFqgmqFYPLNQIMFWSMT 329
Cdd:MTH00046 242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSV----YSVWRQVNFWLIV 316

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 440655396 330 TTVILLTWIGKQPVEEPFITTGQTLTMIYFSFFLTNK 366
Cdd:MTH00046 317 SLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFIFK 353
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 3.28e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.61  E-value: 3.28e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   9 PVIKMINNSLIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  89 MFFICMYLHVGRGLYYSSF--LLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 440655396 167 GFAVSNPTLSRFFSLHFIMPFIIMAMTMMHLIFLHQTGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.48e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.58  E-value: 1.48e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   18 LIDLPTPINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFFICMYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   98 VGRGLYYSSF--LLKETWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVSNPTL 175
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 440655396  176 SRFFSLHFIMPFIIMAMTMMHLIFLHQTG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-352 1.25e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 161.27  E-value: 1.25e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 207 NPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIISLKTPYILGDPDNFIPANPMSTPPHIQPEWYFLFAYAILRSIPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 440655396 287 KLGGVIALVASIAILMIMPLYNKSKFQGmQFYPLNQIMFWSMTTTVILLTWIGKQPVEEPFITTGQ 352
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQ 145
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 1.74e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.77  E-value: 1.74e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  258 PANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMPLYNKSKFQGMQFYPLNQIMFWSMTTTVILLTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 440655396  338 IGKQPVEEPFITTGQTLTMIY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 33-209 1.79e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 139.85  E-value: 1.79e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  33 FGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFFICMYLHVGRGLYYSSFLLKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 112 -TWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVSNPTLSRFFSLH-FIMPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 440655396 190 MAMTMMHLIFLHQTGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 4.75e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 134.29  E-value: 4.75e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396   88 SMFFICMYLHVGRGLYYSSFLLKE--TWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  166 GGFAVSNPTLSRFFSLHF-IMPFIIMAMTMMHLIFLHQTGSNNPLGLKSNMEKINFHPFFTFKDLITMIILMMFLLIISL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 440655396  245 KTPYILGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 24-209 9.38e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 116.74  E-value: 9.38e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  24 PINISMWWNFGSLLGTCLMIQIITGTFLAMHYTADIEMAFKSIIHISRDVNNGWLMRTMHMNGASMFFICMYLHVGRgLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VY 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 104 YSSFLLKE---TWMVGTLILFMTMATAFIGYVLPWGQMSFWGATVITNLVSAIPYLGDQMVKWIWGGFAVSNPTLSRFFS 180
Cdd:CHL00070 106 LTGGFKKPrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185

                        170       180       190
                 ....*....|....*....|....*....|
gi 440655396 181 LH-FIMPFIIMAMTMMHLIFLHQTGSNNPL 209
Cdd:CHL00070 186 LHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 228-335 2.00e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.64  E-value: 2.00e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 228 DLITM---IILMMFLLIISLKT--PYILGDPdnfipANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILM 302
Cdd:CHL00058  35 DLLYIfpvVILGTIACNVGLAVlePSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLL 109

                         90       100       110
                 ....*....|....*....|....*....|....
gi 440655396 303 IMP-LYNKSKFQGMQFYPLNQIMFWSMTTTVILL 335
Cdd:CHL00058 110 TVPfLENVNKFQNPFRRPVATTVFLIGTAVALWL 143
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 211-347 1.04e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.50  E-value: 1.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396 211 LKSNMEKINFHPFFTFKDLITM---IILMMFLLIISLKT--PYILGDPdnfipANPMSTPPHIQPEWYFLFAYAILRSIP 285
Cdd:COG5679   19 LEKGMGHNYYGEPAWPNDLLYIfpvVILGTIALCIGLAVldPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVP 93

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 440655396 286 NKLGGVIALVASIAILMIMP-LYNKSKFQGMQFYPLNQIMFWSMTTTVILLTWIGKQPVEEPF 347
Cdd:COG5679   94 NKLLGIVMMAAIPLGLMLVPfIENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSL 156
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 232-339 4.48e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.88  E-value: 4.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655396  232 MIILMMFLLIISLKT--PYILGDPdnfipANPMSTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVASIAILMIMP-LYN 308
Cdd:TIGR01156  42 VVILGTIACVVGLAVldPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIEN 116

                          90       100       110
                  ....*....|....*....|....*....|.
gi 440655396  309 KSKFQGMQFYPLNQIMFWSMTTTVIlltWIG 339
Cdd:TIGR01156 117 VNKFQNPFRRPVATTVFLFGTVVAL---WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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