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Conserved domains on  [gi|440655391|gb|AGC22289|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Trachytettix bufo]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 7.24e-31

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 105.63  E-value: 7.24e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   3 LMVIMTITAAMMSMIMIMMSTIISKKTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 440655391  83 ISMMKMWWITASMFITILLVGLYYEWKQGMLKW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 7.24e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 105.63  E-value: 7.24e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   3 LMVIMTITAAMMSMIMIMMSTIISKKTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 440655391  83 ISMMKMWWITASMFITILLVGLYYEWKQGMLKW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 9.87e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 9.87e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMkMWWITASMFITILLVGLYYEWKQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 440655391  112 MLK 114
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-115 5.62e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.55  E-value: 5.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMK-ISMMKMWWITAsmFITILLVGLYYEWKQ 110
Cdd:COG0838   35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFReLGWFGLIEMLV--FIAILLVGLIYAWKK 112


                 ....*
gi 440655391 111 GMLKW 115
Cdd:COG0838  113 GALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 7.24e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 105.63  E-value: 7.24e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   3 LMVIMTITAAMMSMIMIMMSTIISKKTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 440655391  83 ISMMKMWWITASMFITILLVGLYYEWKQGMLKW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 6.67e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 103.40  E-value: 6.67e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   1 MKLMVIMTITAAMMSMIMIMMSTIISKKTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPM 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 440655391  81 MKISMMKMWWITASMFITILLVGLYYEWKQGMLKWAS 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 1.66e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 100.07  E-value: 1.66e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   1 MKLMVIMTITAAMMSMIMIMMSTIISKKTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPM 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 440655391  81 MKISMMKMWWITASMFITILLVGLYYEWKQGMLKWA 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 32-116 1.22e-27

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 97.74  E-value: 1.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMKMWWITASMFITILLVGLYYEWKQG 111
Cdd:MTH00042  31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110


                 ....*
gi 440655391 112 MLKWA 116
Cdd:MTH00042 111 GLEWA 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 9.87e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 9.87e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMkMWWITASMFITILLVGLYYEWKQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGW-FGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 440655391  112 MLK 114
Cdd:pfam00507  92 ALE 94
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 32-116 2.30e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 89.21  E-value: 2.30e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMKMWWITASMFITILLVGLYYEWKQG 111
Cdd:MTH00136  31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110


                 ....*
gi 440655391 112 MLKWA 116
Cdd:MTH00136 111 GLEWA 115
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-116 1.53e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 87.30  E-value: 1.53e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  34 EKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMKMWWITASMFITILLVGLYYEWKQGML 113
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                 ...
gi 440655391 114 KWA 116
Cdd:MTH00106 112 EWT 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-117 1.72e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 87.22  E-value: 1.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   1 MKLMVIMTITAAMMSMIMIMMSTIISKKTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPM 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 440655391  81 MKISMMKMWWITASMFITILLVGLYYEWKQGMLKWAS 117
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWSS 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 28-115 4.56e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 86.10  E-value: 4.56e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  28 KTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMKMWWitASMFITILLVGLYYE 107
Cdd:MTH00203  27 KVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLL--AFLFLILLTLGLIYE 104


                 ....*...
gi 440655391 108 WKQGMLKW 115
Cdd:MTH00203 105 WLQGGLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-116 5.61e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 85.70  E-value: 5.61e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391   1 MKLMVIMTITAAMMSMIMIMMSTIISKKTitDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPM 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKP--DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 78

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 440655391  81 MKISMMKMWWITASMFITILLVGLYYEWKQGMLKWA 116
Cdd:MTH00113  79 INLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 32-116 8.02e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 85.43  E-value: 8.02e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPL---IPMMKISMMKMWwitASMFITILLVGLYYEW 108
Cdd:MTH00069  29 DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNTPTNTLFW---STLILILLTLGLIYEW 105


                 ....*...
gi 440655391 109 KQGMLKWA 116
Cdd:MTH00069 106 IQGGLEWA 113
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-116 7.02e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 83.37  E-value: 7.02e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPlipmMKISMMKMWW---ITASMFITILLVGLYYEW 108
Cdd:PRK06602  38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFP----WAVSFREIGWlgfVEAMIFILVLLVGLVYLW 113


                 ....*...
gi 440655391 109 KQGMLKWA 116
Cdd:PRK06602 114 RKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 32-115 5.62e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.55  E-value: 5.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMK-ISMMKMWWITAsmFITILLVGLYYEWKQ 110
Cdd:COG0838   35 NPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFReLGWFGLIEMLV--FIAILLVGLIYAWKK 112


                 ....*
gi 440655391 111 GMLKW 115
Cdd:COG0838  113 GALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 9.61e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 72.43  E-value: 9.61e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPL-IPMMKISMMKMWwiTASMFITILLVGLYYEWKQ 110
Cdd:MTH00055  35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWcVVYNQIGLFGFW--VMYLFLIILTIGLIYEWVK 112


                 ....*
gi 440655391 111 GMLKW 115
Cdd:MTH00055 113 GGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-115 7.99e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 70.09  E-value: 7.99e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILP-LIPMMKISMMKMWwiTASMFITILLVGLYYEWKQ 110
Cdd:MTH00018  30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPwCVLYNQIAPFGFW--TMVGFLFILTLGLIYEWIK 107


                 ....*
gi 440655391 111 GMLKW 115
Cdd:MTH00018 108 GGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 29-115 3.43e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 63.80  E-value: 3.43e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  29 TITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMKMWWITASmFITILLVGLYYEW 108
Cdd:MTH00030  37 TKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYT-FLIVLAIGLAYEW 115


                 ....*..
gi 440655391 109 KQGMLKW 115
Cdd:MTH00030 116 IKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 1.70e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 51.28  E-value: 1.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILP-LIPMMKISMMKMwwITASMFITILLVGLYYEWKQ 110
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPwAVAYDKLGLFAL--IEMLIFVVMLLVGLAYAWKK 116


                 ....*
gi 440655391 111 GMLKW 115
Cdd:PRK07756 117 KVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
31-117 3.86e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 50.44  E-value: 3.86e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  31 TDREKTTPFECGFNPLTHSRlPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMkMWWITASMFITILLVGLYYEWKQ 110
Cdd:PRK08489  43 TEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGL-FGLIEMLLFIVLLTIGFIYAWKK 120


                 ....*..
gi 440655391 111 GMLKWAS 117
Cdd:PRK08489 121 GALEWQS 127
ndhC CHL00022
NADH dehydrogenase subunit 3
 34-115 3.55e-08

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 48.06  E-value: 3.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  34 EKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLiPMMKISMMKMWWITASMFITILLVGLYYEWKQGML 113
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGAL 117


                 ..
gi 440655391 114 KW 115
Cdd:CHL00022 118 EW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-115 1.64e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 46.20  E-value: 1.64e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  32 DREKTTPFECGFNPLTHSRLP--FSIQFFLISMLFLIFDIEIALILPLIPMMKiSMMKMWWITASMFITILLVGLYYEWK 109
Cdd:PRK07928  34 NRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFD-ALGVFGLVEMALFMLTVFVAYAYVWR 112


                 ....*.
gi 440655391 110 QGMLKW 115
Cdd:PRK07928 113 RGGLEW 118
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 35-115 1.01e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 38.72  E-value: 1.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  35 KTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKISMMKMWwitasMFITILLVGLYYEWKQGMLK 114
Cdd:MTH00092  34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFSSLISFF-----MLMIFIFFGFYMEWWYGKLI 108


                 .
gi 440655391 115 W 115
Cdd:MTH00092 109 W 109
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 31-115 2.00e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 38.25  E-value: 2.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  31 TDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPLIPMMKiSMMKMWWITASMFITILLVGLYYEWKQ 110
Cdd:PRK06432  59 SDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFK-RLGLIPFIETLIFLAMPLFAVYYAFKM 137


                 ....*
gi 440655391 111 GMLKW 115
Cdd:PRK06432 138 GYMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 27-115 1.19e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 35.64  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655391  27 KKTITDREKTTPFECGFNPLTHSRLPFSIQFFLISMLFLIFDIEIALILPlIPMMKISMMKMWWITasMFITILLVGLYY 106
Cdd:MTH00060  29 KIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLN-MPFQGLLFYNFWYYY--FFLLLLFLGFVV 105


                 ....*....
gi 440655391 107 EWKQGMLKW 115
Cdd:MTH00060 106 ELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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