|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-337 |
2.93e-80 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 247.81 E-value: 2.93e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 1 MKKSPSLLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFtLLSM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSI-ILNM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 81 NMYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNLMMsIFIITSAIVGA 160
Cdd:MTH00160 80 LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFII-IIIILSAIIGA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 161 IMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNMTI 240
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 241 TMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGLMSMKENKWNLNdIKKSKIQTIMMY 320
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK-KKKNKFSLILNF 317
|
330
....*....|....*..
gi 440655385 321 INMMSTLGLTISPIIIF 337
Cdd:MTH00160 318 LSFISLFGLILSSLLFL 334
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-280 |
1.58e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 89.68 E-value: 1.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 24 ANTWLGVWMGMEINLMSFIPMISCQST-PNMKMSSIKYFIVQAVASVTLIMSFTLLS----------------MNMYYTN 86
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaltGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 87 NMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMIL-MTWQKIAPMVAI----YYLQPNNLMMSIFII---TSAIV 158
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrslLYLPSSPFIQQILLIlaiISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 159 GAIMGMNQISLKLIMAYSSINHIGWLLASI----YYNMITFMWYILIYITLTIMICLMLKS-----GNINSINEMFMNMN 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 440655385 230 QDKINKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISS 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
5-333 |
6.89e-19 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 87.09 E-value: 6.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 5 PSLLLFtSILMMSTMISltANTWLGVWMGMEINLMSFIPMISCQ-STPNMKMSSIKYFIVQAVASVTLIMSFTL------ 77
Cdd:COG1007 105 YALLLF-ATLGMMLMAS--ANDLLTLFLGLELLSLSLYVLVAFRrDDRRSSEAALKYFLLGALSSGFLLYGISLlygatg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 78 ----------LSMNMYYTNNMIICMIMT-ASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIY------- 139
Cdd:COG1007 182 slnlagiaaaLAAGGANSPLLLLGLVLVlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveaf 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 140 --YLQPNNLMMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASI----YYNMITFMWYILIYITLTI----MI 209
Cdd:COG1007 262 pgLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLgafaVI 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 210 CLMLKSGNINsinemfmnmnqDKINKLN------------MTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLI 277
Cdd:COG1007 342 LLLSRKGGEA-----------EEIEDLAglarrspllalaMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAV 410
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 440655385 278 ISSTISLYYYMKMflsAGLMSMKENKwNLNDIKKSKIQTIMMYINMMSTLGLTISP 333
Cdd:COG1007 411 LNSVISAYYYLRV---VKAMYFDEPE-EEAPISAPPGLRVALVIAALLVLLLGIFP 462
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
5-337 |
2.21e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.61 E-value: 2.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 5 PSLLLFtSILMMSTMISltANTWLGVWMGMEinLMSFIPMISCQSTPNMKMS---SIKYFIVQAVASVTLIM-------- 73
Cdd:TIGR01770 105 YILLLF-ALLGIFLLVS--SNDLLSIYLGLE--LQSLCFYVLAGLKRKSRFSteaGLKYFILGAFSSGLLLFgisliygf 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 74 --SFTLLSMNMYYTNNMIICMI-------MTASIMMKMGAAPLHFWFPEVMdQMNWTNCMILMTwqkIAPMVAIYYL--- 141
Cdd:TIGR01770 180 tgSLNFEDLLLFLSNGMLNISLlllgivlILVGLLFKLSAVPFHMWVPDVY-EGAPTPVTAFFS---IVPKIAIFAVflr 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 142 ----------QPNNLMMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASI----YYNMITFMWYILIYITLTI 207
Cdd:TIGR01770 256 lflyilfgfsEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 208 ---MICLMLKSGNINSINEMFMNMNQDKINKL---NMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISST 281
Cdd:TIGR01770 336 gafGVLSLLRSYKDEWIEYISDFAGLFKTNPIlaiLILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSV 415
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 440655385 282 ISLYYYMKMflsAGLMSMKENKWNLNDIKKSKIQTIMMYINMMSTLGLTISPIIIF 337
Cdd:TIGR01770 416 IGAFYYLRV---VKVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-337 |
2.93e-80 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 247.81 E-value: 2.93e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 1 MKKSPSLLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFtLLSM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSI-ILNM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 81 NMYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNLMMsIFIITSAIVGA 160
Cdd:MTH00160 80 LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFII-IIIILSAIIGA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 161 IMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNMTI 240
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 241 TMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGLMSMKENKWNLNdIKKSKIQTIMMY 320
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK-KKKNKFSLILNF 317
|
330
....*....|....*..
gi 440655385 321 INMMSTLGLTISPIIIF 337
Cdd:MTH00160 318 LSFISLFGLILSSLLFL 334
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
2-332 |
7.52e-56 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 184.70 E-value: 7.52e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 2 KKSPSLLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFtLLSMN 81
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGS-LIMYN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 82 MYYTNNMIICMIMtaSIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNLMMSIFIIT---SAIV 158
Cdd:MTH00144 80 LSFSWFSMSLLLL--GLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsvlSALV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 159 GAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFmNMNQDKINKLNM 238
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGLSI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 239 TITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGLMSMKENKWNlndiKKSKIQTIM 318
Cdd:MTH00144 237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSN----SSKVLNSSI 312
|
330
....*....|....
gi 440655385 319 MYINMMSTLGLTIS 332
Cdd:MTH00144 313 ISLNLLGGLLFLLL 326
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-336 |
3.77e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 180.79 E-value: 3.77e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 6 SLLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLLSMN---- 81
Cdd:MTH00112 5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNtgqw 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 82 -MYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQP--NNLMMSIFIITSAIV 158
Cdd:MTH00112 85 dITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNslNPTLLLTLAILSTLI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 159 GAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNM 238
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 239 TITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGL-----MSMKENKWNLNDIKKSK 313
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTItlppnTTNMMMKWRTKPKKNTL 324
|
330 340
....*....|....*....|...
gi 440655385 314 IQTIMmyinMMSTLGLTISPIII 336
Cdd:MTH00112 325 TATLT----TLSTLLLPLSPMIL 343
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-336 |
1.85e-53 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 178.97 E-value: 1.85e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 1 MKKSPSLLLFTSIlMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVAS-----VTLIMSF 75
Cdd:MTH00041 1 MNRNVLIFLITSI-ILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAaillnGALIQAW 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 76 TLLSMNMYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQpNNLMMSIFI--- 152
Cdd:MTH00041 80 LSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIS-NLLNSNILIlcg 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 153 ITSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDK 232
Cdd:MTH00041 159 ILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 233 INKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGLMSMKENKWNLNDIKKS 312
Cdd:MTH00041 239 ISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNS 318
|
330 340
....*....|....*....|....*...
gi 440655385 313 KIQTIMMYIN----MMSTLGLTISPIII 336
Cdd:MTH00041 319 GNITVYGVILsilsSISILGLLLIPLFL 346
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
7-337 |
5.99e-52 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 175.16 E-value: 5.99e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 7 LLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLLSM-----N 81
Cdd:MTH00200 6 LPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWtsgqwG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 82 MYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQP--NNLMMSIFIITSAIVG 159
Cdd:MTH00200 86 ISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPalNSNILLLLGLLSVLVG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 160 AIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNMT 239
Cdd:MTH00200 166 GWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLG 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 240 ITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKM-FLSAGLMSMKENKWNLNDIKKSKIQTIM 318
Cdd:MTH00200 246 LTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLsYLTLLTLSPNQINMMSSWRTKSNSNLLV 325
|
330
....*....|....*....
gi 440655385 319 MYINMMSTLGLTISPIIIF 337
Cdd:MTH00200 326 GLLLLLSILGLPLTPQLLF 344
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
7-336 |
7.37e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 172.34 E-value: 7.37e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 7 LLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLLSM-----N 81
Cdd:MTH00105 6 LIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgqwT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 82 MYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQP--NNLMMSIFIITSAIVG 159
Cdd:MTH00105 86 ITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPsiNPNLLLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 160 AIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNMT 239
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 240 ITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMK--------MFLSAGLMSMkenKWNLNDIKK 311
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRliystsltMFPSTNNMKM---KWQFENTKP 322
|
330 340
....*....|....*....|....*
gi 440655385 312 SKIQTIMMyinMMSTLGLTISPIII 336
Cdd:MTH00105 323 MTLLPTLI---ILSTMLLPLTPMLS 344
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-336 |
3.92e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 169.85 E-value: 3.92e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 9 LFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLLSMNMYYTnnM 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLS--L 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 89 IICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNLMMSIFIITSAIVGAIMGMNQIS 168
Cdd:MTH00197 80 LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 169 LKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNMTITMLSLGGM 248
Cdd:MTH00197 160 IRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 249 PPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSaglmSMKENKWNLNDIKKSKIQTIMMYINMMSTLG 328
Cdd:MTH00197 240 PPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK----SLILSNWMINFLMKINLLYSGLFILLMMMLP 315
|
....*...
gi 440655385 329 LTISPIII 336
Cdd:MTH00197 316 LLMIFTMI 323
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
12-290 |
1.31e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 166.52 E-value: 1.31e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 12 SILMMS----TMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLL-----SMNM 82
Cdd:MTH00135 7 TILLFSlglgTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNawltgQWDI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 83 YYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNLMMSIFI-ITSAIVGAI 161
Cdd:MTH00135 87 QQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLgLTSTLVGGW 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 162 MGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNMTIT 241
Cdd:MTH00135 167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 440655385 242 MLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKM 290
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRL 295
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-298 |
9.80e-48 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 163.80 E-value: 9.80e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 1 MKKSPSLLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLLSM 80
Cdd:MTH00011 2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 81 NMYYTNNmIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNL--MMSIFIITSAIV 158
Cdd:MTH00011 82 FPSLLKN-ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNIlpMMTSMAAMSALA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 159 GAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKLNM 238
Cdd:MTH00011 161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 239 TITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGLMS 298
Cdd:MTH00011 241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
7-337 |
2.88e-47 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 162.78 E-value: 2.88e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 7 LLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTllsMNMYYTN 86
Cdd:MTH00070 6 LSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSST---INAWFTG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 87 --------NMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQP--NNLMMSIFIITSA 156
Cdd:MTH00070 83 ewtimnmqTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHllNSNLLIIMGLLST 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 157 IVGAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMNMNQDKINKL 236
Cdd:MTH00070 163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 237 NMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGL-----MSMKENKWNLndikK 311
Cdd:MTH00070 243 MMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLttspnTSNSKLYWRF----K 318
|
330 340
....*....|....*....|....*.
gi 440655385 312 SKIQTIMMYINMMSTLGLTISPIIIF 337
Cdd:MTH00070 319 NKTNNLLSLTIILSLMLLPITPTILN 344
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-280 |
1.58e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 89.68 E-value: 1.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 24 ANTWLGVWMGMEINLMSFIPMISCQST-PNMKMSSIKYFIVQAVASVTLIMSFTLLS----------------MNMYYTN 86
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYnytgtlsfdelskaltGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 87 NMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMIL-MTWQKIAPMVAI----YYLQPNNLMMSIFII---TSAIV 158
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrslLYLPSSPFIQQILLIlaiISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 159 GAIMGMNQISLKLIMAYSSINHIGWLLASI----YYNMITFMWYILIYITLTIMICLMLKS-----GNINSINEMFMNMN 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 440655385 230 QDKINKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISS 280
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-290 |
1.84e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 90.86 E-value: 1.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 16 MSTMISLTANTWLGVWMGMEINLMS-FIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLL---------------- 78
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLcgttgglhlsyinlvl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 79 --SMNMYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNLMMSIFIITSA 156
Cdd:MTH00196 84 nsGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 157 IVGAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMI----TFMWYILIYITLTIMI--CLMLKSGNINSINEMFMNMNQ 230
Cdd:MTH00196 164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFesiqASLVYLFIYIIMSICVfsIILALNVYKNLIIEFSGLSRR 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 231 DKINKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKM 290
Cdd:MTH00196 244 LPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
5-333 |
6.89e-19 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 87.09 E-value: 6.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 5 PSLLLFtSILMMSTMISltANTWLGVWMGMEINLMSFIPMISCQ-STPNMKMSSIKYFIVQAVASVTLIMSFTL------ 77
Cdd:COG1007 105 YALLLF-ATLGMMLMAS--ANDLLTLFLGLELLSLSLYVLVAFRrDDRRSSEAALKYFLLGALSSGFLLYGISLlygatg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 78 ----------LSMNMYYTNNMIICMIMT-ASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIY------- 139
Cdd:COG1007 182 slnlagiaaaLAAGGANSPLLLLGLVLVlAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveaf 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 140 --YLQPNNLMMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASI----YYNMITFMWYILIYITLTI----MI 209
Cdd:COG1007 262 pgLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLgafaVI 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 210 CLMLKSGNINsinemfmnmnqDKINKLN------------MTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLI 277
Cdd:COG1007 342 LLLSRKGGEA-----------EEIEDLAglarrspllalaMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAV 410
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 440655385 278 ISSTISLYYYMKMflsAGLMSMKENKwNLNDIKKSKIQTIMMYINMMSTLGLTISP 333
Cdd:COG1007 411 LNSVISAYYYLRV---VKAMYFDEPE-EEAPISAPPGLRVALVIAALLVLLLGIFP 462
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
5-337 |
2.21e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.61 E-value: 2.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 5 PSLLLFtSILMMSTMISltANTWLGVWMGMEinLMSFIPMISCQSTPNMKMS---SIKYFIVQAVASVTLIM-------- 73
Cdd:TIGR01770 105 YILLLF-ALLGIFLLVS--SNDLLSIYLGLE--LQSLCFYVLAGLKRKSRFSteaGLKYFILGAFSSGLLLFgisliygf 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 74 --SFTLLSMNMYYTNNMIICMI-------MTASIMMKMGAAPLHFWFPEVMdQMNWTNCMILMTwqkIAPMVAIYYL--- 141
Cdd:TIGR01770 180 tgSLNFEDLLLFLSNGMLNISLlllgivlILVGLLFKLSAVPFHMWVPDVY-EGAPTPVTAFFS---IVPKIAIFAVflr 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 142 ----------QPNNLMMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASI----YYNMITFMWYILIYITLTI 207
Cdd:TIGR01770 256 lflyilfgfsEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 208 ---MICLMLKSGNINSINEMFMNMNQDKINKL---NMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISST 281
Cdd:TIGR01770 336 gafGVLSLLRSYKDEWIEYISDFAGLFKTNPIlaiLILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSV 415
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 440655385 282 ISLYYYMKMflsAGLMSMKENKWNLNDIKKSKIQTIMMYINMMSTLGLTISPIIIF 337
Cdd:TIGR01770 416 IGAFYYLRV---VKVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
2-295 |
2.24e-16 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 79.42 E-value: 2.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 2 KKSPSLLLFTSILMMSTMISLTANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLL--- 78
Cdd:COG0651 104 RRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLyga 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 79 --SMNMYYTNNMI----------ICMIMTASIMMKMGAAPLHFWFPE---------------VMdqmnwTNCM---ILMT 128
Cdd:COG0651 184 tgTLNMADLAARLaeldpglllaAFALLLVGFGIKAALFPLHFWLPDaypaapspvsallsgLL-----TKVGvyaILRV 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 129 WQKIAPMVAIYYLQPnnLMMSIFIITsAIVGAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYIT--LT 206
Cdd:COG0651 259 LTLLFGADPALFLGT--LLLVLGLLT-MLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhAL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 207 IMICLMLKSGNI------NSINEMFMNMNQDKINKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISS 280
Cdd:COG0651 336 AKALLFLAAGAIeratgtRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSS 415
|
330
....*....|....*
gi 440655385 281 TISLYYYMKMFLSAG 295
Cdd:COG0651 416 LLTLAYFVRIFGRAQ 430
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
77-335 |
4.82e-16 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 78.51 E-value: 4.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 77 LLSMNMYYTNNMIICMI-MTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVA-------IYYLQPN--NL 146
Cdd:CHL00049 202 LINTQMYNSPGISIALIfITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatrifdiPFYFSSNewHL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 147 MMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASI--------YYNMITFMwyiLIYI-----TLTIMICLML 213
Cdd:CHL00049 282 LLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIivgdsndgYASMITYM---LFYIfmnlgTFACIVLFGL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 214 KSG--NINSINEMFMnmnQDKINKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMF 291
Cdd:CHL00049 359 RTGtdNIRDYAGLYT---KDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKII 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 440655385 292 lsaGLMSMKENKWNLNDIKKSKIQTIM--------MYINMM--STLGLTISPII 335
Cdd:CHL00049 436 ---KLLMTGRNQEITPYVRNYRRSPLRsnnsielsMIVCVIasTIPGISMNPII 486
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
5-294 |
5.30e-16 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 78.32 E-value: 5.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 5 PSLLLFtSILMMSTMISltANTWLGVWMGMEinLMSFIPMISCQSTPNMKMSS---IKYFIVQAVASvtlimSFTLLSMN 81
Cdd:PRK05777 106 YLLVLF-ALLGMMVMVS--ANDLLTLFLGLE--LLSLPLYALAALRRDRRRSLeaaIKYFVLGALAS-----GFLLYGMS 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 82 MYY-------------------TNNMII---CMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAI- 138
Cdd:PRK05777 176 LLYgatgslsfagiakaladgsGNSLLLlfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLl 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 139 ---YYLQPNN-----LMMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLL----ASIYYNMITFMWYILIYITLT 206
Cdd:PRK05777 256 rllVVAFGGLsedwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvglaAGTAEGYSAVLFYLLAYLFMT 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 207 I----MICLMLKSG----NINSINEMFmnmnqdKINKL---NMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTV 275
Cdd:PRK05777 336 LgafgVISLLRRKGgeaeSISDFAGLS------KRSPLlaaVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
|
330 340
....*....|....*....|...
gi 440655385 276 LIISSTISLYYYMK----MFLSA 294
Cdd:PRK05777 410 GVLNSAIGAFYYLRviklMYFDE 432
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
13-290 |
9.31e-16 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 77.75 E-value: 9.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 13 ILMMSTMISLTANTWLGVWMGMEI-NLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLLSMNMYYTNNMIIC 91
Cdd:MTH00199 105 IVALGSLLLVSSINWLSIYLAIELqTLTLFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGIN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 92 MIMTA---------SIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQPNNLMMSIFIITSAIVGAIM 162
Cdd:MTH00199 185 SILTGdvgkilitiSLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 163 GMNQISLKLIMAYSSINHIGWLL--------ASIYYNMItfmwYILIYITLTIMICLMLKSGNINS--INEMFMNMNQDK 232
Cdd:MTH00199 265 ALNQTKIKRLLAYSGIGHMGFILfgvaigsfESIQASLI----YMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNP 340
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 440655385 233 INKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKM 290
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
27-290 |
1.40e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 77.59 E-value: 1.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 27 WLGVWMGMEINLMSFIPMISCQSTPNMKMSS---------IKYFIVQAVAS-------------------VTLIMSFTLL 78
Cdd:MTH00198 210 WLTIYLALEFQTLALFILAGEGSQPGSHFPSpgntppesgLKYWILGAMSSgfylfgcalyfgftgnegmLGTILSATLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 79 SMNMYYTNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIYYLQ-PNNLMMSIFIItSAI 157
Cdd:MTH00198 290 TTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLViTSKLLLSVAII-SLV 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 158 VGAIMGMNQISLKLIMAYSSINHIGWLL----ASIYYNMITFMWYILIYITLTI----MICLMLKSGNINSINEMFM--N 227
Cdd:MTH00198 369 VGAFGALNQTRIKRLLAYSGIGHIGFILigvsAGTYESLQASWTYAVTYLVSALasftVICTLEEFGTRTPTSRQRDgsF 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 228 MNQDKINKL---------------NMTITMLSLGGMPPLIGFLPKW-ILIQEMMIKSS------FLIVTVLIISSTISLY 285
Cdd:MTH00198 449 GNYNLVRRLvdltilsrgqpyiafSLAIVFLSLAGIPPLLGFLGKWfILVGSIKIAFSsslsiyYLVALFAIICTCISAF 528
|
....*
gi 440655385 286 YYMKM 290
Cdd:MTH00198 529 YYIRI 533
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
145-293 |
4.46e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 60.76 E-value: 4.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 145 NLMMSIFIIT---SAIVGAIMGMNQISLKLIMAYSSINHIGWLLASI----YYNMITFMWYILIYITLTIMicLMLKSGN 217
Cdd:PRK12667 292 AALSPILIILgavSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIgigtQLGLAAALFHIINHAIAKSL--LFLASGV 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 218 I------NSINEMFMNMNQDKINKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMF 291
Cdd:PRK12667 370 FihaagtRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAW 449
|
..
gi 440655385 292 LS 293
Cdd:PRK12667 450 YS 451
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
96-289 |
1.24e-09 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 59.29 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 96 ASIMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPM-VAIYYL--------QPNNLMMSIFIITSAIVGAIMGMNQ 166
Cdd:PRK02504 218 AGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFaLAIRLLvtafpsfdEQWKLLFTALAILSMVLGNVVALAQ 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 167 ISLKLIMAYSSINHIGWLLASI-------YYNMItfmWYILIYI-----TLTIMICLMLKSGNiNSINEMFMNMNQDKIN 234
Cdd:PRK02504 298 TSMKRMLAYSSIGQAGFVMIGLvagteagYASMV---FYLLAYLfmnlgAFACVILFSLRTGT-DQISDYAGLYQKDPLL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 440655385 235 KLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMK 289
Cdd:PRK02504 374 TLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
56-336 |
4.91e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 51.25 E-value: 4.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 56 SSIKYFIVQAVASVTLIMSFTLL-----SMNMYY----------TNNMIICMIMTASIMMKMGAAPLHFWFPEVMDQM-N 119
Cdd:PRK08376 173 AGIKYMFVGSLASSMVLLGIALLygqygTLNMAYlavkmsenptVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAApS 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 120 WTNCMILMTwqKIAPMVA-------IYYLQPNNL----MMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLL--- 185
Cdd:PRK08376 253 SISAMLLVI--KQAGLYAlarvlfsIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlgl 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 186 ---------------------ASIYYNMITFMWYILIYITLTIMIcLMLKSGNINSINEMFMNMnqdKINKLNMTITMLS 244
Cdd:PRK08376 331 gvglaalgdpamasygeialaGGIYHIVNHALYKALLFLTAGAVI-YETGTRNLNELGGLARTM---PKTTIAFLIGAAA 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 245 LGGMPPLIGFLPKWiLIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGLMSMKENKWNLNDIKKSKIqtIMMYINMM 324
Cdd:PRK08376 407 IVGLPPFNGFASKW-LIYESSALFNPILGVIAMIGSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPML--VPMLILAI 483
|
330
....*....|..
gi 440655385 325 STLGLTISPIII 336
Cdd:PRK08376 484 AIIGMGLFPWQI 495
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-289 |
6.24e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 50.65 E-value: 6.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 34 MEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASvtlimSFTLLSMNMYY----TNNM--------------IICMIMT 95
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGS-----TFLLIGVGLLYgvtgTLNMadlagalaenptvvTAFGFVL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 96 ASIMMKMGAAPLHFWFPevmDQMNWTNCMILMTWQKIAPMVAIYYL-----------QPNNLMMSIFIITSA----IVGA 160
Cdd:PRK08375 210 LALALKAAVFPLHTWLP---RAYPAAPPVVTALLSGLVTKVAVYALiriyftvfggdFRFALGLGWLLAVLAllsmLVGS 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 161 IMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYIT--LTIMICLMLKSGNInsinemFMNMNQDKINKLN- 237
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhALMKGALFLAAGAI------EVTYGTRRLSELSg 360
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 440655385 238 ----MTITM-------LSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMK 289
Cdd:PRK08375 361 lgrrMPLTAaafavasLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLR 423
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
143-334 |
2.00e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 46.27 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 143 PNNLMMSIFIITSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITFMWYILIYIT---------LTIMICLML 213
Cdd:PRK12662 277 PFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsivksalFMVSGSISY 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 214 KSGNINSINEMFMNMNQDKINkLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLS 293
Cdd:PRK12662 357 HFGTTKLEDCLNLWKSMPKIT-LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEA 435
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 440655385 294 AGLMS-MKENKWNLNDIKKSKIQTIMMYINMMSTLGLTISPI 334
Cdd:PRK12662 436 LYFESrMVESKANDKAFKTPNAMVLCIWIMAILSIIVGIYPI 477
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
240-294 |
1.48e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 43.40 E-value: 1.48e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 440655385 240 ITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSA 294
Cdd:PRK07691 378 IAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKG 432
|
|
| PRK06591 |
PRK06591 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
9-292 |
1.53e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235837 [Multi-domain] Cd Length: 432 Bit Score: 43.23 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 9 LFTSILMMSTMISL---TANTWLGVWMGMEINLMSFIPMISCQSTPNMKMSSIKYFIVQAVASVTLIMSFTLL-----SM 80
Cdd:PRK06591 116 LFYGILLFAHTGYLgmiATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLlsitgSL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 81 NMY--------YTNNMIIC---MIMTASIMMKMGAAPLHFWfpeVMDQMNWTNCMILMTWQKIAPMVAIYYL-------- 141
Cdd:PRK06591 196 NMTdiaaylqeHTNSRIITiaiGFFLIGAILKTAFFPMHFW---MMRAYNNTASVILVYLAGISTIIGIYIIykftyiii 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 142 --QPNNLMMSIFIITSAIVGAIM----GMNQISLKLIMAYSSINHIGWllasIYYNMITFMWYILIYITLTIMICLMLKS 215
Cdd:PRK06591 273 gyETIKTAITNFIRPIALATLIIapyfAYQAKNFKNIIIYSCFTQIGY----VFLLYVTENGIIILPSLLLADSINKIAL 348
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 440655385 216 GNINSINEMFmnmnQDKINKLNMTITMLSLGGMPPLIGFLPKWILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFL 292
Cdd:PRK06591 349 FLIDAYNESY----KREPNKVLIIIAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKMVL 421
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
154-292 |
2.40e-04 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 42.83 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 154 TSAIVGAIMGMNQISLKLIMAYSSINHIGWLLASIYYNMITF-MWYILIYITLtiMICLMLKSGNInsINEMfmnMNQDk 232
Cdd:COG1009 284 ITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAaLFHLLTHAFF--KALLFLGAGSV--IHAT---GTRD- 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 440655385 233 INKLN------------MTITMLSLGGMPPLIGFLPKWILIQEMMIKS--SFLIVTVLIISSTISLYYYMKMFL 292
Cdd:COG1009 356 IRKMGglrkkmpitaitFLIGALSLAGIPPFAGFFSKEAILEAALEAGglGPLLLAVALLGAFLTAFYSFRLFF 429
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
89-188 |
7.54e-04 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 41.57 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 89 IICMIMTASIMMKMGAAPLHFWFPEVMDQMNWTNcmilmTWQKIAPMV--AIYYLQ------PNNLMMSIFIITSAIVGA 160
Cdd:PRK12650 209 VVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVS-----AFLHAAAVVkaGIYLLLrfspvfHDVAVWNWLLIIVGMITA 283
|
90 100 110
....*....|....*....|....*....|..
gi 440655385 161 IMG----MNQISLKLIMAYSSINHIGWLLASI 188
Cdd:PRK12650 284 LMGavfaVQKTDLKKLTAYSTVSQLGWIVATI 315
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
98-305 |
1.03e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 40.24 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 98 IMMKMGAAPLHFWFPEVMDQMNWTNCMILMTWQKIAPMVAIyyLQPNNLMMSIFIITSAIVGAIMGMNQISLKLIMAYSS 177
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL--LQFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLILSS 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440655385 178 INHIGWLLASIYYNMITFMWYILIYITLTIMICLMLKSGNINSINEMFMnmnqdkinklnmtitMLSLGGMPPLIGFLPK 257
Cdd:MTH00091 145 TESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWET---------------LLVFMNLPFSVTFFVK 209
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 440655385 258 WILIQEMMIKSSFLIVTVLIISSTISLYYYMKMFLSAGLMSMKENKWN 305
Cdd:MTH00091 210 IFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYN 257
|
|
| |
