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Conserved domains on  [gi|436409153|gb|AGB56606|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Physeter catodon]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 6.69e-178

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 496.68  E-value: 6.69e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFYPT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*.
gi 436409153 321 KRMTLLPTAIVMSTMLLPLTPMLSTL 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 6.69e-178

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 496.68  E-value: 6.69e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFYPT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*.
gi 436409153 321 KRMTLLPTAIVMSTMLLPLTPMLSTL 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.45e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.93  E-value: 1.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   23 SSHWLFAWVGFEMNMMAIIPIMMKNF-NPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWTITKLFNPTASM----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   97 ------LVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLL-TWQKIAPLSI-----LYQISPSINMNLMLTMSLLSILI 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  165 GGWGGLNQTQLRKIMAYSSIAHMGWMTTIL----PYNTTMTLLNLLIYVTMTFTMFMLFI-----QNSTTTTLSLSQTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 436409153  236 KTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-296 3.13e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 3.13e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  10 FTTLILSTT----IVVISSHWLFAWVGFEMnmMAI---IPIMMKNFNPRTTEASTKYFLTQATASALLMM---------- 72
Cdd:COG1007  104 FYALLLFATlgmmLMASANDLLTLFLGLEL--LSLslyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatg 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  73 -----AIMINLSHSGQWTITKLFnptASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQI-- 145
Cdd:COG1007  182 slnlaGIAAALAAGGANSPLLLL---GLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlv 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 146 ----SPSINMNLMLT-MSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTM----TLLNLLIYVTMT---F 213
Cdd:COG1007  259 eafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNlgaF 338

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 214 TMFMLFIQNSTTTTLSLSQ--TWNKTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLY 291
Cdd:COG1007  339 AVILLLSRKGGEAEEIEDLagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                 ....*
gi 436409153 292 FYMRL 296
Cdd:COG1007  419 YYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-296 1.61e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.61e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153    4 FISIITFTtlILSTTIVVISSHWLFAWVGFEMNMMAI-IPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMI------ 76
Cdd:TIGR01770 104 FYILLLFA--LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftg 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   77 --------NLSHSGQWTITKLFNPTASMLVtiALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPS 148
Cdd:TIGR01770 182 slnfedllLFLSNGMLNISLLLLGIVLILV--GLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLY 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  149 I-------NMNLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTM----TLLNLLIYVTMTFTMF- 216
Cdd:TIGR01770 260 IlfgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFg 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  217 ----MLFIQNSTTTTLSLSQTWNKT-PITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLY 291
Cdd:TIGR01770 340 vlslLRSYKDEWIEYISDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAF 419


                  ....*
gi 436409153  292 FYMRL 296
Cdd:TIGR01770 420 YYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 6.69e-178

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 496.68  E-value: 6.69e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFYPT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*.
gi 436409153 321 KRMTLLPTAIVMSTMLLPLTPMLSTL 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 2.39e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.77  E-value: 2.39e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSiNMNLMLTMSLL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFYPT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 436409153 321 KRMTLLPTAIVMSTMLLPLTPMLSTLL 347
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-347 1.67e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 351.05  E-value: 1.67e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFYPT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*..
gi 436409153 321 KrMTLLPTAIVMSTMLLPLTPMLSTLL 347
Cdd:MTH00112 321 K-NTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-347 1.32e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 346.14  E-value: 1.32e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFyPT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319

                        330       340
                 ....*....|....*....|....*..
gi 436409153 321 KRMTLLPTAIVMSTMLLPLTPMLSTLL 347
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-306 9.63e-92

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 277.97  E-value: 9.63e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFP 306
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-347 3.64e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 273.77  E-value: 3.64e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 SGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFYPT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*..
gi 436409153 321 KRMtLLPTAIVMSTMLLPLTPMLSTLL 347
Cdd:MTH00200 321 SNL-LVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 1.10e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 182.33  E-value: 1.10e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   1 MNPFISIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  81 sgqwtITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQIspsINMNLMLTMSLL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPIT 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 241 TTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYStalTLFPSTNNMKMKWQFYPT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKN 309

                        330       340
                 ....*....|....*....|...
gi 436409153 321 KRMTLLPTAIVMSTMLLPLTPML 343
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-315 1.87e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 170.84  E-value: 1.87e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   6 SIITFTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWT 85
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  86 ItklfnptaSMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINM-NLMLTMSLLSILI 164
Cdd:MTH00144  86 S--------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 165 GGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVT-MTFTMFMLFIQNSTTTTLSLSQtwNKTPITTTL 243
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVsSGFLFFSLWSGDSGSMKDLGSL--KPSYKTGLS 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 436409153 244 TMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKW 315
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 10-299 1.81e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.72  E-value: 1.81e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  10 FTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIminlshSGQWTITKL 89
Cdd:MTH00011  12 SSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  90 FNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTMSLLSILIGGWGG 169
Cdd:MTH00011  86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 170 LNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPITTTLTMLTLL 249
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 436409153 250 SMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYS 299
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-321 2.34e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.73  E-value: 2.34e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  12 TLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSHSgqwtitkLFN 91
Cdd:MTH00197   6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  92 PTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPsiNMNLMLTMSLLSILIGGWGGLN 171
Cdd:MTH00197  79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 172 QTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYVTMTFTMFMLFIQNSTTTTLSLSQTWNKTPITTTLTMLTLLSM 251
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 252 GGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFYPTK 321
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGL 306
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 1.50e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 112.03  E-value: 1.50e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  13 LILSTTIVVISSHWLFAWVGFEM-NMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWTI----T 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELqTLTLFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  88 KLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSInmNLMLTMSLLSILIGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVT--NVVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 168 GGLNQTQLRKIMAYSSIAHMGWMTTILPYNT----TMTLLNLLIYVTMTFTMF--MLFIQNSTTTTLSLSQTWNKTPITT 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiILSLKLTKGLIVEVSGLSRKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 436409153 242 TLTMLTLLSMGGLPPLSGFIPKWMII 267
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 2.56e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 110.12  E-value: 2.56e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  13 LILSTTIVVISSHWLFAWVGFEMNMMAI-IPIMMKNFNPRTTEASTKYFLTQATASALLMMAI-------------MINL 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  79 SHSGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPSINMNLMLTms 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGG-- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 159 LLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNT----TMTLLNLLIYVTMTFTMFM--LFIQNSTTTTLSLSQ 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSiiLALNVYKNLIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 436409153 233 TWNKTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.45e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.93  E-value: 1.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   23 SSHWLFAWVGFEMNMMAIIPIMMKNF-NPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWTITKLFNPTASM----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   97 ------LVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLL-TWQKIAPLSI-----LYQISPSINMNLMLTMSLLSILI 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  165 GGWGGLNQTQLRKIMAYSSIAHMGWMTTIL----PYNTTMTLLNLLIYVTMTFTMFMLFI-----QNSTTTTLSLSQTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 436409153  236 KTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-296 3.13e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 3.13e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  10 FTTLILSTT----IVVISSHWLFAWVGFEMnmMAI---IPIMMKNFNPRTTEASTKYFLTQATASALLMM---------- 72
Cdd:COG1007  104 FYALLLFATlgmmLMASANDLLTLFLGLEL--LSLslyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatg 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  73 -----AIMINLSHSGQWTITKLFnptASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQI-- 145
Cdd:COG1007  182 slnlaGIAAALAAGGANSPLLLL---GLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlv 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 146 ----SPSINMNLMLT-MSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTM----TLLNLLIYVTMT---F 213
Cdd:COG1007  259 eafpGLAADWQLLLAvLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNlgaF 338

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 214 TMFMLFIQNSTTTTLSLSQ--TWNKTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLY 291
Cdd:COG1007  339 AVILLLSRKGGEAEEIEDLagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                 ....*
gi 436409153 292 FYMRL 296
Cdd:COG1007  419 YYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-296 1.61e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.61e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153    4 FISIITFTtlILSTTIVVISSHWLFAWVGFEMNMMAI-IPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMI------ 76
Cdd:TIGR01770 104 FYILLLFA--LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftg 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   77 --------NLSHSGQWTITKLFNPTASMLVtiALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQISPS 148
Cdd:TIGR01770 182 slnfedllLFLSNGMLNISLLLLGIVLILV--GLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLY 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  149 I-------NMNLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTM----TLLNLLIYVTMTFTMF- 216
Cdd:TIGR01770 260 IlfgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFg 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  217 ----MLFIQNSTTTTLSLSQTWNKT-PITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLY 291
Cdd:TIGR01770 340 vlslLRSYKDEWIEYISDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAF 419


                  ....*
gi 436409153  292 FYMRL 296
Cdd:TIGR01770 420 YYLRV 424
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-296 4.58e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 90.65  E-value: 4.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  10 FTTLILSTT---IVVISS-HWLFAWVGFE-MNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSHSGQW 84
Cdd:PRK05777 105 FYLLVLFALlgmMVMVSAnDLLTLFLGLElLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  85 TITKLFNPTAS------------MLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAP----LSILYQISPS 148
Cdd:PRK05777 185 SFAGIAKALADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfavlLRLLVVAFGG 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 149 INM---NLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTM----TLLNLLIYVTMT---FTMFML 218
Cdd:PRK05777 265 LSEdwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTlgaFGVISL 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 219 FIQNSTTTTLSLSQT-WNKT-PITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRL 296
Cdd:PRK05777 345 LRRKGGEAESISDFAgLSKRsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-296 2.24e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.50  E-value: 2.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  10 FTTLILSTTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWTITKL 89
Cdd:COG0651  113 FLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADL 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  90 FN----------PTASMLVTIALAIKLGLSPFHFWVPEVTQGIP------LSTGLVlltwqKIAPLSIL---YQISPSIN 150
Cdd:COG0651  193 AArlaeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsalLSGLLT-----KVGVYAILrvlTLLFGADP 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 151 MN----LMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYV----TMTFTMFM----L 218
Cdd:COG0651  268 ALflgtLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLaagaI 347

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 436409153 219 FIQNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRL 296
Cdd:COG0651  348 ERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 96-267 2.54e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.58  E-value: 2.54e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  96 MLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILyqISPSINMNLMLTMSLLSILIGGWGGLNQTQL 175
Cdd:MTH00198 303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRI 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 176 RKIMAYSSIAHMGWMTTILPYNTTMTLLN----LLIYVTMTFTMFMLFI---------------------QNSTTTTLSL 230
Cdd:MTH00198 381 KRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTVICtleefgtrtptsrqrdgsfgnYNLVRRLVDL 460

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 436409153 231 SQTWNKTPITTTLTMLTLLSMGGLPPLSGFIPKWMII 267
Cdd:MTH00198 461 TILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 9.45e-12

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 59.19  E-value: 9.45e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 436409153  291 YFYMRLTYSTALTLFPSTNNMKMKWQFYPTKRMTLLPTAIVMSTMLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
49-295 8.53e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.68  E-value: 8.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  49 NPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWT----ITKLFNPTASMLVTIAL-------AIKLGLSPFHFWVPE 117
Cdd:PRK02504 156 DPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTqlsaIALALITSPSLGLALALvfviagiAFKISAVPFHQWTPD 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 118 VTQGIPLSTGLVLLTWQKIA----PLSILYQISPSINMNLMLTMSLLSIL---IGGWGGLNQTQLRKIMAYSSIAHMGWM 190
Cdd:PRK02504 236 VYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQWKLLFTALAILsmvLGNVVALAQTSMKRMLAYSSIGQAGFV 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 191 TTILPYNT----TMTLLNLLIYVTMT---FTMFMLF-IQNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPPLSGFIP 262
Cdd:PRK02504 316 MIGLVAGTeagyASMVFYLLAYLFMNlgaFACVILFsLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395

                        250       260       270
                 ....*....|....*....|....*....|...
gi 436409153 263 KWMIIQELTKNEALIMPTFMATTALLNLYFYMR 295
Cdd:PRK02504 396 KIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-191 3.73e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.78  E-value: 3.73e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  55 ASTKYFLTQATASALLMMAIMINLSHSGQWT--ITKL----FNPTASMLV----TIALAIKLGLSPFHFWVPEV-----T 119
Cdd:COG1008  162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTfdIAELaaapLPLTAQLLLflafFIAFAVKVPMFPFHTWLPDAhveapT 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 436409153 120 QGIPLSTGLVLltwqKIAP---LSILYQISP---SINMNLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMT 191
Cdd:COG1008  242 AGSVLLAGVLL----KMGGyglLRFALPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 5.89e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 57.32  E-value: 5.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  51 RTTEASTKYFLTQATASALLMMAI--MINLSHsGQ---WTI------TKLFNPTAS----MLVTIALAIKLGLSPFHFWV 115
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFswLYGLSG-GEielQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWT 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 116 PEVTQGIPLSTGLVLLTWQKIAPL-------SILYQISPSINMNLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMG 188
Cdd:CHL00049 238 PDVYEGSPTPVVAFLSVTSKVAASalatrifDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 189 W-MTTILPYNT----TMTLLNLLIYVTM---TFTMFMLF-IQNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPPLSG 259
Cdd:CHL00049 318 YvIIGIIVGDSndgyASMITYMLFYIFMnlgTFACIVLFgLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAG 397


                 ....
gi 436409153 260 FIPK 263
Cdd:CHL00049 398 FFGK 401
PRK12650 PRK12650
DUF4040 family protein;
67-263 1.26e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 56.59  E-value: 1.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  67 SALLMMAIMI---NLS---HSGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEVTQGI-PLSTGLVLLTWQKiAPL 139
Cdd:PRK12650 177 AAVAIAATQTgttSLSgilHSDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAItPVSAFLHAAAVVK-AGI 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 140 SILYQISPSINMN-----LMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIL----PYNTTMTLLNLLIYVT 210
Cdd:PRK12650 256 YLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIgvgtPFALTAAVVHTLAHAL 335

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 436409153 211 MTFTMFMLF----IQNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPPLSGFIPK 263
Cdd:PRK12650 336 FKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-268 1.63e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.72  E-value: 1.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153   55 ASTKYFLTQATASaLLMMAIMINLSHSGQWT------ITKLFNPTASMLV----TIALAIKLGLSPFHFWVPEV-----T 119
Cdd:TIGR01972 157 AAMKFFLYTLAGS-LLMLLAILGLYFLGGGTfdllelLNLPLPFGVQTWLflafFIAFAVKVPLFPLHTWLPDAhveapT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  120 QGIPLSTGLVLltwqKIAP---LSILYQISPS---INMNLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTT- 192
Cdd:TIGR01972 236 AGSVILAGVLL----KMGTygfLRFNLPLFPDaslYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLg 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  193 ILPYNTT------MTLLNLLIYVTMTFTMF-MLFIQNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPPLSGFIPKWM 265
Cdd:TIGR01972 312 IFSFNELgisgavFQMISHGLITAALFLLVgVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 436409153  266 IIQ 268
Cdd:TIGR01972 392 ILL 394
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 46-266 1.13e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.18  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  46 KNFNPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWTITKL-----FNPT-----ASMLVTIALAIKLGLSPFHFWV 115
Cdd:PRK08376 164 RNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLavkmsENPTvvakiALALFIAGLAMKSGAVPVHMWL 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 116 PEVTQGIPLSTGLVLLTwQKIAPLSILYQIS-----PSINMN----LMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAH 186
Cdd:PRK08376 244 PDAYPAAPSSISAMLLV-IKQAGLYALARVLfsiygPAINLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQ 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 187 MGWM-----------TTILPYNTTMTLLNLLIYVTMTFTMF--MLFIQNSTTTTLSLSQTWNK-------TPITTTLTML 246
Cdd:PRK08376 323 IGYMllglgvglaalGDPAMASYGEIALAGGIYHIVNHALYkaLLFLTAGAVIYETGTRNLNElgglartMPKTTIAFLI 402

                        250       260
                 ....*....|....*....|
gi 436409153 247 TLLSMGGLPPLSGFIPKWMI 266
Cdd:PRK08376 403 GAAAIVGLPPFNGFASKWLI 422
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-299 4.79e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 51.13  E-value: 4.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  54 EASTKYFLTQATASALLMMAI-----------MINLS---HSGQWTITKLF--NPTASMLVTIALA-----IKLGLSPFH 112
Cdd:PRK12667 164 EAAIKYALIGAVGTTLYFLALaflyatfgtlnMADLSakiRGLSFPLTGGLagNPPLALGVALALAlwaftIKAAIFPNH 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 113 FWVPEV--TQGIPLSTGL--VLLTWQKIAPLSILYQI---------SPSINMNLMLTMSLLSILIGGWGGLNQTQLRKIM 179
Cdd:PRK12667 244 FWLPDAhpAAPSPVSAMLsgLVVNVGAYAIIRFLYTIfgispslidFRAALSPILIILGAVSAIIGALMMVVQKDVKRLL 323

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 180 AYSSIAHMGWMTTILPYNTTMTLLNLLIY-VTMTFTMFMLFIQNSTTTTLS-------LSQTWNKTPITTTLTMLTLLSM 251
Cdd:PRK12667 324 AYSTISHMGYIFMGIGIGTQLGLAAALFHiINHAIAKSLLFLASGVFIHAAgtrdideLAGLGRKMPIASFAFLIGALSL 403

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 436409153 252 GGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTYS 299
Cdd:PRK12667 404 VGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 55-300 1.31e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.15  E-value: 1.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  55 ASTKYFLTQATASALLMMAIMINLSHSGQWTITKLFN-----PTASMLVTIALAI------KLGLSPFHFWVPE------ 117
Cdd:COG1009  163 AARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptiLSSPLLTLILLLLllgafgKSAQFPLHFWLPDamegpt 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 118 -----------VTQGIPLstglvlltwqkIAPLSILYQISPSInMNLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAH 186
Cdd:COG1009  243 pvsallhaatmVKAGVYL-----------LARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQ 310

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 187 MGWMTTILPYNTTMTLLNLLIyvTMTFTMFMLF-------IQNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPPLSG 259
Cdd:COG1009  311 LGYMFLALGVGAYVAALFHLL--THAFFKALLFlgagsviHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAG 388

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 436409153 260 FIPKWMIIQEL--TKNEALIMPTFMATTALLNLYFYMRLTYST 300
Cdd:COG1009  389 FFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLV 431
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-298 6.86e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.57  E-value: 6.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  93 TASMLVTIALAIKLGLSPFHFWVPEV-TQGIPLSTGLVLLTWQKIAPLSIL------YQISPSINMNL---MLTMSLLSI 162
Cdd:PRK08375 203 TAFGFVLLALALKAAVFPLHTWLPRAyPAAPPVVTALLSGLVTKVAVYALIriyftvFGGDFRFALGLgwlLAVLALLSM 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 163 LIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNT----TMTLLNLLIYVTMTFTMFM----LFIQNSTTTTLSLSQTW 234
Cdd:PRK08375 283 LVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTplalAAGLLHLLHHALMKGALFLaagaIEVTYGTRRLSELSGLG 362

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 436409153 235 NKTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRLTY 298
Cdd:PRK08375 363 RRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 62-263 1.03e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.23  E-value: 1.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  62 TQA----TASALLMMAIMINLSHS-GQWTITKLF-NPTASMLVTIALAI-------KLGLSPFHFWVPEVTQG-IPLSTG 127
Cdd:PRK12644 160 LQAllvtTAGGLAMLVGIIILGQAaGTYRLSELLaDPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAApTPVSAY 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 128 L---------VLLtwqkIAPLSILYQISPSINMnLMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNT 198
Cdd:PRK12644 240 LhaaamvkagIYL----VARLAPGFADVPVWRP-TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGT 314

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 436409153 199 TMTLLNLLiyvTMTF--TMF--MLFI-------QNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPPLSGFIPK 263
Cdd:PRK12644 315 RDAALAGL---AMLLahALFkaALFLvvgiidhSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 54-270 1.13e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.91  E-value: 1.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  54 EASTKYFLTQATASALLMMAIMINLSHSGQWTITKLFN-----PTASMLVTIALAI------KLGLSPFHFWVPEVTQGI 122
Cdd:PRK08668 147 KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQglindTSTGFALIVFLFLlafgvaKAGIFPLHVWAPDAYSEA 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 123 P------LSTGLV------------LLTWQKIAPLSILYQISPSINMNLMLtMSLLSILIGGWGGLNQTQLRKIMAYSSI 184
Cdd:PRK08668 227 PqsfsavLSGQLSklgaygfllvlyVLPGTKLFSEFGTYRGVPLFNYILAW-LGNISIIVGTLMAILQEDIKKLIAYSSV 305

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 185 AHMGW-------MTTILPYNTTMTLLNLLIYVTMTFTMFMLFI-QNSTTTTLSLSQTWNKTPITTTLTMLTLLSMGGLPP 256
Cdd:PRK08668 306 ANGGYilvglglGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIyRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPP 385

                        250
                 ....*....|....
gi 436409153 257 LSGFIPKWMIIQEL 270
Cdd:PRK08668 386 MSGFASKWLIFEAL 399
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-191 1.35e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 1.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  55 ASTKYFLTQATASALLMMAIM----INLSHSGQWTITKLFNPTASMLVT--------IALAIKLGLSPFHFWVPEV---- 118
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPPGVQywlflaffIAFAVKMPMFPLHTWLPDAhvqa 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 119 -TQGIPLSTGLVLltwqKIAP---LSILYQISPSINMN---LMLTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMT 191
Cdd:PRK05846 242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-296 1.81e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.48  E-value: 1.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  92 PTASMLVTIALAIKLGLSPFhFWVPEVTQGIPLSTGLV---LLTWQKIAPL----SILYQISPSINMNLMLTMSLLSILI 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALfaaLLTKVGIYALirvfTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 165 GGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIY-----VTMTFTMFMLFIQNSTTTTLSLSQT---WNK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYlvhdmVVKTALFLIAGSLVRLTGYRSLQYLgglYRK 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 237 TPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQELTKNEALIMPTFMATTALLNLYFYMRL 296
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-326 3.04e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 45.68  E-value: 3.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  98 VTIALAIKLGLSPFHFWVPEVTQGIPLST--------------GLVLLTWqKIAPLSIlYQISPSInmnlmLTMSLLSIL 163
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAHVEAPVAGsvllagillklggyGLVRLSW-PILPLGA-QNLAPAV-----IAMGIVGIV 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 164 IGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLL-NLLIYVTMTFTMFMLFI-------QNSTTTTLSLSQTWN 235
Cdd:MTH00226 309 YGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTgSIFIMLAHGIVSSLLFIlvtilydRHHTRLIKYYRGLSI 388

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 236 KTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQElTKNEALIMPTFMAT----TALLNLYFYMRLTYSTALTLFPSTNNM 311
Cdd:MTH00226 389 TMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILS-SFNWNPIIGVFVCSgvilSAVYSFYFANRVTFGAPGNLITFARDV 467

                        250
                 ....*....|....*
gi 436409153 312 KMKwQFYPTKRMTLL 326
Cdd:MTH00226 468 NRR-EFYITASMVFF 481
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 96-191 4.05e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 45.04  E-value: 4.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  96 MLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVL--------------LTWQkiaplsiLYQISPSINMNLMLTMSLLS 161
Cdd:MTH00217 210 LGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILagvllklggygfirFSWP-------LLPEASEYFSPLIQTLSLLA 282

                         90       100       110
                 ....*....|....*....|....*....|
gi 436409153 162 ILIGGWGGLNQTQLRKIMAYSSIAHMGWMT 191
Cdd:MTH00217 283 IIYGSLTTCRQVDLKRIIAYSSVAHMGLVT 312
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
98-190 5.55e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.61  E-value: 5.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  98 VTIALAIKLGLSPFHFWVPE--VTQGIPLST-------------------GLVLLTWQKIAPLsilyqispsinmnlMLT 156
Cdd:PRK06473 211 ILVGFGIKIPLVPFHTWLPDahVEASTPVSVllagvllklgtygllrfgvGLFPEAWVYLAPW--------------LAT 276

                         90       100       110
                 ....*....|....*....|....*....|....
gi 436409153 157 MSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWM 190
Cdd:PRK06473 277 WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 94-209 1.68e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  94 ASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLL-TWQKIAPLSILY--------QISPSINmNLMLTMSLLSILI 164
Cdd:PRK08676 208 SFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGILRlsallrqsGAAEQFS-NVLIGLGIFSIAV 286

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 436409153 165 GGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYV 209
Cdd:PRK08676 287 AAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHM 331
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
16-268 1.95e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.01  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  16 STTIVVISSHWLFAWVGFEMNMMAIIPIMMKNFNPRTTEASTKYFLTQATASALLMMAIMINLSHSGQWTITK-----LF 90
Cdd:PRK06277 112 SVSAIVLADDIFNLYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLV 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  91 NPT------ASMLVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLVLLTWQKIAPLSILYQI---------SPSINMnLML 155
Cdd:PRK06277 192 NPTspviygGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgglsyFPSAQG-VLI 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 156 TMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTL-------LNLLIYVTMTFTMF-MLFIQNSTTTT 227
Cdd:PRK06277 271 ALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKSALFLGAgIVSYRTKTSNL 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 436409153 228 LSLSQTWNKTPITTTLTMLTLLSMGGLPPLSGFIPKWMIIQ 268
Cdd:PRK06277 351 RKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 100-191 3.40e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 39.28  E-value: 3.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 100 IALAIKLGLSPFHFWVPEVTQGIPLSTGL----VLLTWQKIAPLSILYQISPSINM---NLMLTMSLLSILIGGWGGLNQ 172
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAHVEAPVAGSVilagILLKLGGYGFLRFSWPLFPAASEyfaPLIVMLSVIAVIYGSLTTCRQ 296

                         90
                 ....*....|....*....
gi 436409153 173 TQLRKIMAYSSIAHMGWMT 191
Cdd:MTH00204 297 VDFKRLIAYSSVAHMGLVP 315
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 10-188 5.94e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.56  E-value: 5.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  10 FTTLILSTTIVVISSHWLFAWVGFeMNMMAIIP--IMMKNFN-PRTTEASTKYFLTQATASALLMMAIMINLSHSGQWTI 86
Cdd:PRK08667 116 LTALFILSMLGVVASANTFSFLFF-WEIMALSSffLVMNDYQeEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFEL 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  87 TKLFNPTAS-----MLVTIALAIKLGLSPFHFWVPEVTQGIP-----LSTGlVLLTWQKIAPLSILYQI-SPSINMN-LM 154
Cdd:PRK08667 195 SPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSG-VMLKVAVYGLVRFLMDVlSPELWWGvLI 273

                        170       180       190
                 ....*....|....*....|....*....|....
gi 436409153 155 LTMSLLSILIGGWGGLNQTQLRKIMAYSSIAHMG 188
Cdd:PRK08667 274 LLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-268 6.64e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.41  E-value: 6.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  97 LVTIALAIKLGLSPFHFWVPEVTQGIPLSTGLV---LLTwqKIAPLSILYQIS---PSINMN-LMLTMSLLSILIGGWGG 169
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVfagLLT--KVGVYAIIRTHTllfPGGGLDtLLMVVALLTMVVGILGA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153 170 LNQTQLRKIMAYSSIAHMGWMTTILPYNTTMTLLNLLIYV----TMTFTMFML--FI--QNSTTTTLSLSQTWNKTPITT 241
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVvgLIerQAGSSSLRRLGGLAKASPLLA 371

                        170       180
                 ....*....|....*....|....*..
gi 436409153 242 TLTMLTLLSMGGLPPLSGFIPKWMIIQ 268
Cdd:PRK12665 372 VLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-188 8.84e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 37.70  E-value: 8.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 436409153  55 ASTKYFLTQATASALLMMA----------IMINLSHSGQWTITKLFNPTASMLVTIALAIKLGLSPFHFWVPEV--TQGI 122
Cdd:PRK12561 138 AATKFILYTALASIFILVAglalalsgdtFTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDAhgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 436409153 123 PLSTGL--VLLTWQKIAPLSILYQISPSINMNLMLTMSLLSILIGGWGGLN---QTQLRKIMAYSSIAHMG 188
Cdd:PRK12561 218 PVSMILagVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMG 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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