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Conserved domains on  [gi|432141329|gb|AGB06374|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Tripanurga importuna]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-234 2.46e-112

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 329.04  E-value: 2.46e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLVKMPMFL 80
Cdd:MTH00163 120 LIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFF 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  81 VHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSV 160
Cdd:MTH00163 200 VHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSV 279

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 432141329 161 AHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00163 280 AHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSS 353
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-234 2.46e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 329.04  E-value: 2.46e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLVKMPMFL 80
Cdd:MTH00163 120 LIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFF 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  81 VHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSV 160
Cdd:MTH00163 200 VHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSV 279

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 432141329 161 AHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00163 280 AHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSS 353
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 8.11e-57

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 182.51  E-value: 8.11e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329    1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMF------ELELLYFSLVMAFLV 74
Cdd:pfam00361  15 LLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssGLLLLFLLILVGFLF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:pfam00361  95 KSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRL 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLA-NISYERLGSRSLLINKGLLNFMPSMALWWFLLSS 233
Cdd:pfam00361 175 LAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAML 254


                  .
gi 432141329  234 A 234
Cdd:pfam00361 255 S 255
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-234 2.28e-55

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 183.74  E-value: 2.28e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYqPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLN----NFMFELE-LLYFSLVMAFLVK 75
Cdd:COG1008  144 LIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaaPLPLTAQlLLFLAFFIAFAVK 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLR-VLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:COG1008  223 VPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRfALPLFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRL 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:COG1008  303 IAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALA 382
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-222 2.72e-46

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 159.72  E-value: 2.72e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329    1 LIPTLFLILGWGyQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAG-TMNFYLLNNFMFELE---LLYFSLVMAFLVKM 76
Cdd:TIGR01972 139 LIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgTFDLLELLNLPLPFGvqtWLFLAFFIAFAVKV 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   77 PMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALI 155
Cdd:TIGR01972 218 PLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLI 297

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 432141329  156 AYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMP 222
Cdd:TIGR01972 298 AYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMP 364
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-234 2.46e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 329.04  E-value: 2.46e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLVKMPMFL 80
Cdd:MTH00163 120 LIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFF 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  81 VHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSV 160
Cdd:MTH00163 200 VHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSV 279

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 432141329 161 AHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00163 280 AHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSS 353
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-234 8.04e-91

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 273.25  E-value: 8.04e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYL---LNNFMFELELLYFSLVMAFLVKMP 77
Cdd:MTH00150  88 LIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLissLRKLLSSMGLWGLLVFLAFLVKLP 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  78 MFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAY 157
Cdd:MTH00150 168 MYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAY 247

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 432141329 158 SSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00150 248 SSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCII 324
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-232 2.99e-89

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 270.53  E-value: 2.99e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELE------LLYFSLVMAFLV 74
Cdd:MTH00124 126 LIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPTLTnswtnlLLWLACLMAFMV 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:MTH00124 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSL 285

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLS 232
Cdd:MTH00124 286 IAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLAN 363
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-234 1.66e-83

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 256.06  E-value: 1.66e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLN------NFMFELELLYFSLVMAFLV 74
Cdd:MTH00044 127 LIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIYSSSSSLSIPLSElnwltsLSSNSSSIWWIFCILAFLV 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKF-NYIWISISLVGGVLVSLICLRQTDLKA 153
Cdd:MTH00044 207 KMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKA 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 154 LIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSS 233
Cdd:MTH00044 287 LIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCA 366


                 .
gi 432141329 234 A 234
Cdd:MTH00044 367 A 367
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-234 7.02e-83

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 254.13  E-value: 7.02e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYL---LNNFMFELELLYFSLVMAFLVKMP 77
Cdd:MTH00205 121 LIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFnfpLNFSDFYLFLYWIFLMLAFLVKLP 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  78 MFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAY 157
Cdd:MTH00205 201 MYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAY 280

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 432141329 158 SSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00205 281 SSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISC 357
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-230 7.50e-82

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 251.76  E-value: 7.50e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLV------MAFLV 74
Cdd:MTH00068 126 LIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLILLELMSPMQLMTYTNKIwwlaclLAFMV 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:MTH00068 206 KMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSL 285

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFL 230
Cdd:MTH00068 286 IAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLL 361
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-234 9.67e-82

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 251.20  E-value: 9.67e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLN---NFMFELELLYFSLVMAFLVKMP 77
Cdd:MTH00014 123 LIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSMLMSSmepPSIYLMNLWWLITILAFMVKMP 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  78 MFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAY 157
Cdd:MTH00014 203 LYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAY 282

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 432141329 158 SSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00014 283 SSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAA 359
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-232 1.13e-79

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 245.96  E-value: 1.13e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELE------LLYFSLVMAFLV 74
Cdd:MTH00110 126 LIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPLPnswsnnLLWLACMMAFMV 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:MTH00110 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSL 285

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLS 232
Cdd:MTH00110 286 IAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLAS 363
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-234 2.05e-73

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 229.83  E-value: 2.05e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLL---NNFMFELELLYFSLVMAFLVKMP 77
Cdd:MTH00206 125 LIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLP 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  78 MFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAY 157
Cdd:MTH00206 205 LYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAY 284

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 432141329 158 SSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00206 285 SSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLA 361
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-234 1.23e-65

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 209.81  E-value: 1.23e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNF------MFELELLYFSLVMAFLV 74
Cdd:MTH00127 127 LIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSqplqlsSWADKLWWAGCLLAFLV 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:MTH00127 207 KMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSL 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00127 287 IAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLA 366
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 8.11e-57

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 182.51  E-value: 8.11e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329    1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMF------ELELLYFSLVMAFLV 74
Cdd:pfam00361  15 LLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssGLLLLFLLILVGFLF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:pfam00361  95 KSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRL 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLA-NISYERLGSRSLLINKGLLNFMPSMALWWFLLSS 233
Cdd:pfam00361 175 LAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAML 254


                  .
gi 432141329  234 A 234
Cdd:pfam00361 255 S 255
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-234 2.28e-55

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 183.74  E-value: 2.28e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYqPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLN----NFMFELE-LLYFSLVMAFLVK 75
Cdd:COG1008  144 LIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAElaaaPLPLTAQlLLFLAFFIAFAVK 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLR-VLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:COG1008  223 VPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRfALPLFPEASAYFAPLLAALGVIGIIYGALVALAQTDLKRL 302

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:COG1008  303 IAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALA 382
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-225 2.92e-52

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 175.78  E-value: 2.92e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYqPERLQAGMYLLFYTLFVSLPMLVGIFYVYSF----AGTMNFYLLNNF---MFELELLYFSLVMAFL 73
Cdd:PRK05846 144 LIPMYFLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLplpPGVQYWLFLAFFIAFA 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  74 VKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLR-VLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLK 152
Cdd:PRK05846 223 VKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRfSLPLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIK 302

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 432141329 153 ALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMA 225
Cdd:PRK05846 303 KLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLA 375
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-234 8.73e-51

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 171.78  E-value: 8.73e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFL---VKMP 77
Cdd:MTH00204 145 LIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIKLPLSIQKWLLVGFFLslaVKIP 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  78 MFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIA 156
Cdd:MTH00204 225 QIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFsWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIA 304

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 432141329 157 YSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00204 305 YSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLA 382
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-234 3.01e-49

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 167.54  E-value: 3.01e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPtLFLILG-WGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFL---VKM 76
Cdd:MTH00217 142 LIP-MFLIIGiWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCCLKIEKELQYFIFLGFFLslaIKI 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  77 PMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALI 155
Cdd:MTH00217 221 PKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFsWPLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRII 300

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 432141329 156 AYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLSSA 234
Cdd:MTH00217 301 AYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLA 379
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-222 2.72e-46

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 159.72  E-value: 2.72e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329    1 LIPTLFLILGWGyQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAG-TMNFYLLNNFMFELE---LLYFSLVMAFLVKM 76
Cdd:TIGR01972 139 LIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgTFDLLELLNLPLPFGvqtWLFLAFFIAFAVKV 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   77 PMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALI 155
Cdd:TIGR01972 218 PLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFnLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLI 297

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 432141329  156 AYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMP 222
Cdd:TIGR01972 298 AYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMP 364
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-222 1.47e-40

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 145.06  E-value: 1.47e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPtLFLILG-WGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFEL-----ELLYFSLVMAFLV 74
Cdd:MTH00226 164 LIP-MYLILGiWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVVseqtqKWIFLGIFLAMAV 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKA 153
Cdd:MTH00226 243 KIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLsWPILPLGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKR 322

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 432141329 154 LIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMP 222
Cdd:MTH00226 323 LVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMP 391
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-220 4.63e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 139.27  E-value: 4.63e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFelellYFSLVMAFLVKMPMFL 80
Cdd:MTH00094  95 MFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEM-----FFILSLSFMMKFPVYF 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  81 VHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMglkFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSV 160
Cdd:MTH00094 170 LHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSV 246

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 161 AHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNF 220
Cdd:MTH00094 247 THMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSS 306
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-222 2.24e-35

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 130.92  E-value: 2.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQpERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYL----LNNFMFELELL-YFSLVMAFLVK 75
Cdd:PRK12561 120 LVPVYLLISIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLaelgAKSYPLALELLlYAGFLIAFGVK 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:PRK12561 199 LPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRR 278

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMP 222
Cdd:PRK12561 279 LAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-232 1.22e-30

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 117.17  E-value: 1.22e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYqPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELE-----LLYFSLVMAFLVK 75
Cdd:COG0651  140 LLASYGLVALGGT-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDpglllAAFALLLVGFGIK 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV--LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKA 153
Cdd:COG0651  219 AALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVltLLFGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKR 298

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 432141329 154 LIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLS 232
Cdd:COG0651  299 LLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGA 377
ndhD CHL00011
NADH dehydrogenase subunit 4
 1-224 1.83e-29

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 114.66  E-value: 1.83e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQpERLQAGMYLLFYTLFVSLPMLVGIFyvysfagTMNFYLLNNFMFELE-------------LLYFS 67
Cdd:CHL00011 145 LIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVL-------GMGLYGSNEPTLNFEtlanqsypvaleiLFYIG 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  68 LVMAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICL 146
Cdd:CHL00011 217 FLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSL 296

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 432141329 147 RQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSM 224
Cdd:CHL00011 297 GQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKI 374
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-219 4.91e-29

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 113.64  E-value: 4.91e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQpERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYL--LNNFMFELE---LLYFSLVMAFLVK 75
Cdd:PRK06473 140 LIPLYLLIAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYepLRSHTLPLStqlLLLAPILVGFGIK 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLIC-LRQTDLKAL 154
Cdd:PRK06473 219 IPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKM 298

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLN 219
Cdd:PRK06473 299 VAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-227 1.74e-28

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 112.11  E-value: 1.74e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQpERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYL----LNNFMFELELL-YFSLVMAFLVK 75
Cdd:PRK02546 148 LIPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtalaAKDFGLGFQLLcYAGLLIAYGVK 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKAL 154
Cdd:PRK02546 227 LPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRK 306

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSM-ALW 227
Cdd:PRK02546 307 IAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMfAMW 380
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-219 1.39e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 92.47  E-value: 1.39e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   1 LIPTLFLILGWGYQpERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNF----YLLNNFMFELELLYFS-LVMAFLVK 75
Cdd:PRK07363 140 LIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFdydaISTQNLSLNTQLILLTgLLLGFGIK 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVlpFLQLMGLKFNYIWISISLVGGVLV---SLICLRQTDLK 152
Cdd:PRK07363 219 IPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRF--GLQLFPQTWSLVAPGLAIIGTISViygALSAIAQKDIK 296

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 432141329 153 ALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLN 219
Cdd:PRK07363 297 RMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMN 363
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 2-224 5.70e-20

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 87.29  E-value: 5.70e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   2 IPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLVKMPMFLV 81
Cdd:MTH00062 105 IPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSVSLIVYYVLSFMFITKVPLFPF 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  82 HLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLkfnYIWISISLVGGVLVSLICLRQTDLKALIAYSSVA 161
Cdd:MTH00062 185 HTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSF---LGYLFLCCLFSVFFLITACSELDGKRWLAFLSLS 261

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 432141329 162 HMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSM 224
Cdd:MTH00062 262 HILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVL 324
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 35-196 2.67e-18

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 83.12  E-value: 2.67e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  35 MLVGIFYVYSFAGTMNFYLLNNFM-----FELELLYFSLVMAF-LVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLG 108
Cdd:PRK08668 163 MLYAIFLIYAKTGTFDFADISQGLindtsTGFALIVFLFLLAFgVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLG 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 109 GYGLLRVLPFLQLMGL-----------KFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSG 177
Cdd:PRK08668 243 AYGFLLVLYVLPGTKLfsefgtyrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLG 322

                        170
                 ....*....|....*....
gi 432141329 178 ICGSYTLMIAHGLCSSGLF 196
Cdd:PRK08668 323 FAGGLFHVFNHALFKGLFF 341
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-232 3.54e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 82.62  E-value: 3.54e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  15 PERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFL---VKMPMFLVHLWLPKAHVE 91
Cdd:PRK08375 152 RRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENPTVVTAFGFVLLalaLKAAVFPLHTWLPRAYPA 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  92 APVSGSMILAGIMLKLGGYGLLRVL----PFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVL 167
Cdd:PRK08375 232 APPVVTALLSGLVTKVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYIL 311

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 432141329 168 AGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFLLS 232
Cdd:PRK08375 312 LGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVAS 376
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-205 1.15e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 75.37  E-value: 1.15e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   6 FLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLyfsLVMAFLVKMPMFLVHLWL 85
Cdd:PRK07234 131 FLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFAL---IALGLLVKGGIFVSGLWL 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  86 PKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGgvlvSLICLRQTDLKALIAYSSVAHMGI 165
Cdd:PRK07234 208 PLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKRMLAFSTISQLGF 283

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 432141329 166 VLAGLMTmtysgiCGSYTLmiAHGLCSSGLFCLANISYER 205
Cdd:PRK07234 284 ILAAPLV------GGLYAL--AHGLVKSTLFLCAGALPSR 315
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 71-226 8.17e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 72.70  E-value: 8.17e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  71 AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVL-----PFLQLMGLKFNY--IWISISLVGGVLVSL 143
Cdd:PRK12667 232 AFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLytifgISPSLIDFRAALspILIILGAVSAIIGAL 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 144 ICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPS 223
Cdd:PRK12667 312 MMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPI 391


                 ...
gi 432141329 224 MAL 226
Cdd:PRK12667 392 ASF 394
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-222 1.28e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 69.37  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   2 IPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLVKMPMFLV 81
Cdd:PRK08667 145 LSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVFLLLFLGFGIKAGIIPF 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  82 HLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVA 161
Cdd:PRK08667 225 HKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIE 304

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 432141329 162 HMGIVLAGLMTMTYSGICGSYTLM-----------IAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMP 222
Cdd:PRK08667 305 NIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMP 376
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-230 4.73e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 67.69  E-value: 4.73e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   6 FLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELE-----LLYFSLVMAFLVKMPMFL 80
Cdd:PRK12665 148 YVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVRLDELPsgtrtALFAVLLVAFGIKAAVFP 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  81 VHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLqLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSV 160
Cdd:PRK12665 228 LSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLV 306

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 161 AHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMALWWFL 230
Cdd:PRK12665 307 SHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFV 376
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 75-233 9.47e-13

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 66.88  E-value: 9.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLR--VLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLK 152
Cdd:PRK06458 227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRyyILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIK 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 153 ALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMAlWWFLLS 232
Cdd:PRK06458 307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTG-WGLMLG 385


                 .
gi 432141329 233 S 233
Cdd:PRK06458 386 A 386
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 72-208 7.99e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 64.01  E-value: 7.99e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  72 FLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGL--KFNYIWISISLVGGVLVSLICLRQT 149
Cdd:PRK08676 216 FLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGAaeQFSNVLIGLGIFSIAVAAFSMLSQR 295

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 432141329 150 DLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGS 208
Cdd:PRK08676 296 NLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRS 354
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 36-232 1.46e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 63.21  E-value: 1.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  36 LVGIFYVYSFAGTMNFY--------LLNNFMFELELLYfsLVMAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKL 107
Cdd:PRK12662 177 LIGIGFLYAITGTLNMGdmfliiqdLPTNRAIQIGVLF--IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKV 254

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 108 GGYGLLRVL-----PFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSY 182
Cdd:PRK12662 255 MIYLIIRIVydvfkANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAV 334

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 432141329 183 TLMIAHGLCSSGLFCLAN-ISYeRLGSRSLLINKGLLNFMPSMALWWFLLS 232
Cdd:PRK12662 335 AYIVNHSIVKSALFMVSGsISY-HFGTTKLEDCLNLWKSMPKITLAFVLLS 384
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 72-170 3.14e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 62.60  E-value: 3.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  72 FLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRV-LPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTD 150
Cdd:PRK06521 220 FGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVvFDLLGAPGWWWGVLVLALGAISAVLGVLYALAEHD 299

                         90       100
                 ....*....|....*....|
gi 432141329 151 LKALIAYSSVAHMGIVLAGL 170
Cdd:PRK06521 300 LKRLLAYSTIENIGIIFVGL 319
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 36-226 8.70e-11

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 60.94  E-value: 8.70e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  36 LVGIFYVYSFAGTMNFYLLNNFMFEL-----ELLYFSLVMAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLGGY 110
Cdd:PRK08377 175 LIGVALIYGATGTLNMAHIAQLAGTIdptvaQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLY 254

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 111 GLLRVLPFLQLMGLKFNYIW--ISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAH 188
Cdd:PRK08377 255 AMARILYLMQNANGWSSVLKlvIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINH 334

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 432141329 189 GLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMAL 226
Cdd:PRK08377 335 AIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTAL 372
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
30-196 5.52e-10

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 58.68  E-value: 5.52e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  30 FVSLPMLVGIFYVYSFAGTMNF----YLLNNFMFELELLYFSLVM---AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAG 102
Cdd:PRK05777 165 LASGFLLYGMSLLYGATGSLSFagiaKALADGSGNSLLLLFGLVFllvGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLAT 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 103 IMlKLGGYG-LLRVL--PFLQLMGLKFNYIWIsISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGIC 179
Cdd:PRK05777 245 AP-KIAAFAvLLRLLvvAFGGLSEDWQQVLAI-IAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYS 322

                        170
                 ....*....|....*..
gi 432141329 180 GSYTLMIAHGLCSSGLF 196
Cdd:PRK05777 323 AVLFYLLAYLFMTLGAF 339
PRK12646 PRK12646
DUF4040 family protein;
6-226 9.12e-10

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 58.23  E-value: 9.12e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   6 FLILGWGYQPERLQAGMYLLFY-TLFVSLPMLVGIFYVYSFAGTMNFYLL---NNFMFELELLYFSLVMAFL---VKMPM 78
Cdd:PRK12646 147 FLLISYWYNNGDSQFGAIQSFMiTVFGGLALLVGFIMLYIMTGTNNITEIlgqADHIKNHGLFIPMIFMFLLgafTKSAQ 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  79 FLVHLWLPKAhVEAPVSGSMIL-AGIMLKLGGYGLLRVLPFLQLMGLkFNYIWISISLVGGVLVSLICLRQTDLKALIAY 157
Cdd:PRK12646 227 FPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLGLSNM-YIYIVTFVGLITMLFGSITALKQWDLKGILAY 304

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 158 SSVAHMGIVLA------GLMTMTYSGICGSYTL--------MIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPS 223
Cdd:PRK12646 305 STISQLGMIMAmvgiggGYAQHQQDAIASIYVFvlfaalfhLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPK 384


                 ...
gi 432141329 224 MAL 226
Cdd:PRK12646 385 MNL 387
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 35-226 1.83e-09

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 57.05  E-value: 1.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  35 MLVGIFYVYSFAGTMNFYLLNNFMFELE----LLYFSLVM---AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMlKL 107
Cdd:COG1007  169 LLYGISLLYGATGSLNLAGIAAALAAGGanspLLLLGLVLvlaGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KI 247

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 108 GGYG-LLRVL-PFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLM 185
Cdd:COG1007  248 AAFAaLLRLLvEAFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYL 327

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 432141329 186 IAHGLCSSGLF-CLANISYERLGSRSLLINKGLLNFMPSMAL 226
Cdd:COG1007  328 LAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSPLLAL 369
PRK12650 PRK12650
DUF4040 family protein;
68-222 6.36e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 55.82  E-value: 6.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  68 LVMAFLVKMPMFLVHLWLPKAHVEA-PVSgSMILAGIMLKLGGYGLLRVLPFLQLMGLkFNYIWISISLVGGVLVSLICL 146
Cdd:PRK12650 214 IAVAAFTKSAQFPFHFWLPEAMAAItPVS-AFLHAAAVVKAGIYLLLRFSPVFHDVAV-WNWLLIIVGMITALMGAVFAV 291

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 432141329 147 RQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMP 222
Cdd:PRK12650 292 QKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMP 367
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-222 8.39e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.10  E-value: 8.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   7 LILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLV-----KMPMFLV 81
Cdd:PRK08376 160 LVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIALALFIaglamKSGAVPV 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  82 HLWLPKAHVEAPVSGSMILagIMLKLGG-YGLLRVLpfLQLMGLKFNYI---WISI-----SLVGGVLVSLIclrQTDLK 152
Cdd:PRK08376 240 HMWLPDAYPAAPSSISAML--LVIKQAGlYALARVL--FSIYGPAINLAtvgWVIIilgclTMFVGVAMAVV---QKDVK 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 153 ALIAYSSVAHMGIVLAGLMT--MTYSGICGSYTLMIA----------HGLCSSGLFCLANISYERLGSRSLLINKGLLNF 220
Cdd:PRK08376 313 RLLAYHSVSQIGYMLLGLGVglAALGDPAMASYGEIAlaggiyhivnHALYKALLFLTAGAVIYETGTRNLNELGGLART 392


                 ..
gi 432141329 221 MP 222
Cdd:PRK08376 393 MP 394
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
6-211 2.18e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.80  E-value: 2.18e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   6 FLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELE----LLYFSLVM--AFLVKMPMF 79
Cdd:PRK12663 145 FVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGdtatLTTIALLFllAFGMKAALF 224

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  80 LVHlWLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFL---QLMGLKFNYIWIS-ISLVGGVLVSLIclrQTDLKALI 155
Cdd:PRK12663 225 PFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqERELLHPLLATMAaITMVIGALGALA---YKDIRRIA 300

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 432141329 156 AYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSL 211
Cdd:PRK12663 301 GYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSL 356
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 15-230 4.08e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 53.05  E-value: 4.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  15 PERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVM-AFLVKMPMFLVHLWLPKAhVEAP 93
Cdd:PRK06525 159 PKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHGSLKYLVFLGILfAAWGKSAQLPFYSWLPDA-MEAP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  94 VSGSMIL-AGIMLKLGGYGLLRVLPFLQLMGLKFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMT 172
Cdd:PRK06525 238 TPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSL 317

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 432141329 173 MTY---SGICGSYTLMIAHGLCSSGLFCLAN-ISYErLGSRSLLINKGLLNFMPSMALWWFL 230
Cdd:PRK06525 318 AILgsrLALEGSIAYIFNHAFAKSLFFLVAGaLSYS-CGTRLLPRLRGVLKKLPLVGVGFCV 378
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-211 8.71e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 52.13  E-value: 8.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   6 FLILGWGYQPERLQAGMYLLFYTLFVSLPM-LVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLVKMPMFLVHLW 84
Cdd:PRK06589 153 AFLIGHTRNNISLSGGYKYLKILMISALLLfLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSW 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  85 LPKAHVEAPVSGSMILAGIMLKLGGYGLLRV------LPFLQLMGLKFNYIwISISLVGGVLVSLICLRQTDLKALIAYS 158
Cdd:PRK06589 233 LPAAMVAHYPVSALLHAVIVVKTGLFCIYKIllyifgLSYLQRIFAEFNWL-IFIPIVSIFYSSLKALKTDNIKKILAYS 311

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 432141329 159 SVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSL 211
Cdd:PRK06589 312 TISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQV 364
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 30-196 9.00e-07

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 48.79  E-value: 9.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   30 FVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVM-------AFLVKMPMFLVHLWLPKAHVEAPVSGSMILAg 102
Cdd:TIGR01770 164 FSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNISLLLLgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFS- 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  103 IMLKLGGYG-LLRVLPFLQLMGLKFNYIWISISLVGGVLV-SLICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICG 180
Cdd:TIGR01770 243 IVPKIAIFAvFLRLFLYILFGFSEAWQIFLAIIAFLSMLIgNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKA 322

                         170
                  ....*....|....*.
gi 432141329  181 SYTLMIAHGLCSSGLF 196
Cdd:TIGR01770 323 VLFYIFIYALMSLGAF 338
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
6-169 2.20e-06

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 47.97  E-value: 2.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   6 FLILGWGyQPERLQAGM-YLLFYTLFVSLpMLVGIFYVYSFAGTMNFyllnNFMFELELLYFSLVM-AFLVKMPMFLVHL 83
Cdd:PRK12668 131 FLVWARG-TKAAVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSFAF----GAIAGLGGTAAWLILiGFGVNAAFPPLHA 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  84 WLPKAHVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMglkfnyIWI-SISLVGGVLVSLIclrQTDLKALIAYSSVAH 162
Cdd:PRK12668 205 WLPDAYPEATVTGSVFLSAFTTKTAVYALARAFPGTELL------IYIgAAMAVYGVFFALL---ENDLRRLLSYHIVSQ 275


                 ....*..
gi 432141329 163 MGIVLAG 169
Cdd:PRK12668 276 VGYMVAG 282
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 33-222 4.73e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 46.84  E-value: 4.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  33 LPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLV------KMPMFLVHLWLPKAhVEAPVSGSMIL-AGIML 105
Cdd:PRK12647 160 LALLAGLILLGNVTGTYSLSELLASGDVIREHPLYLAILLLVlggaftKSAQFPFHFWLPNA-MEAPTPVSAYLhSATMV 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 106 KLGGYGLLRVLPflqlmGLKFNYIW-ISISLVGG---VLVSLICLRQTDLKALIAYSSVAHMGIV--LAGLMTMTysGIC 179
Cdd:PRK12647 239 KAGIYLLARLNP-----VLGGTPLWqTILPLFGGltmLTGALLAVRQTDLKLILAYSTVSALGTLvmLLGLGSEL--AIK 311

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 432141329 180 GSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMP 222
Cdd:PRK12647 312 AAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMP 354
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 35-188 9.62e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.91  E-value: 9.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  35 MLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAFLV------KMPMFLVHLWLPKAhVEAPVSGSMIL-AGIMLKL 107
Cdd:COG1009  178 LLLGILLLGAIAGTLNFSELLAAAPTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKA 256

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 108 GGYGLLRVLPFLQLMGLkFNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLmtmtysGIcGSYTLMIA 187
Cdd:COG1009  257 GVYLLARLSPLFALSPV-WLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL------GV-GAYVAALF 328


                 .
gi 432141329 188 H 188
Cdd:COG1009  329 H 329
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 63-196 1.21e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 45.62  E-value: 1.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  63 LLYFSLVMAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAgIMLKLGGYGLLRVLPFLQLMGLkfnyiwiSISLVGGVLVS 142
Cdd:MTH00198 300 LGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIA-IIPKFTVYILLTSLVITSKLLL-------SVAIISLVVGA 371

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 432141329 143 LICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLF 196
Cdd:MTH00198 372 FGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTYLVSALASF 425
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 35-166 1.34e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 45.67  E-value: 1.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  35 MLVGIFYVYSFAGTMNFYLLNNF-------MFELELLYFSLVMAFLVKMPMFLVHLWLPKAhVEAPVSGSMILAGIMLKL 107
Cdd:PRK07390 187 LLMGVVALSPLAGTLNFSDLAAWaatanldPLTATLLGLALIAGPTGKCAQFPLHLWLDEA-MEGPNPASILRNSVVVAT 265

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 432141329 108 GGYGLLRVLPFLQLMGLKFNYIwISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIV 166
Cdd:PRK07390 266 GAWVLIKLQPVLALSPVALTVL-IVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLV 323
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 35-196 2.23e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 44.78  E-value: 2.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  35 MLVGIFYVYSFAGTMNFYLLNNFmfeLELLYFSlvMAFLVKMPM--FLVHLWLPKAHVEAPVSGSMILAGIMLKLGGYGL 112
Cdd:PRK06459 136 ILAGFAWAFIISGTTNFSYLPSP---VPLILAS--FGFIIKMGMmpFLVSEWLPIAHGNAPSNFSAILSATMTLMGVYGI 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 113 LRVLPFLQlmGLKFNYIWISISLVGGVLV---SLICLRQTDLKALIAYSSVAHMGIVLA--GLMTMTYSGI--------C 179
Cdd:PRK06459 211 LKMTILTQ--TIPIGYFGLTILAIGAFSIlfgALYAYVSENVKGLLAFSTIENNGAILValGLYMVTKQLItsiehfslI 288

                        170
                 ....*....|....*..
gi 432141329 180 GSYTLMIAHGLCSSGLF 196
Cdd:PRK06459 289 TVILYSFAHSVAKTGLF 305
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 32-226 3.63e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 44.05  E-value: 3.63e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  32 SLPMLVGIFYVYSFAGTMNFYLLNNFMFELEL---LYFSLVMAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGIMLKLG 108
Cdd:PRK08042 147 TLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLgsdIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIG 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 109 GYGLLRvlpfLQLMGLKFNYIWISISLVGGVLVSLI----CLRQTDLKALIAYSSVAHMGIVLAGL-----------MTM 173
Cdd:PRK08042 227 LLGILT----LSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLAYHTLENIGIILLGLgagvtgialeqPAL 302

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 432141329 174 TYSGICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMAL 226
Cdd:PRK08042 303 IALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-199 4.85e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 43.69  E-value: 4.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  12 GYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELE-----LLYFS---LVMAFLVKMPMFLVHL 83
Cdd:PRK12666 152 GSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPaadraLLEAGaalLLVVFLIKAAMWPLNF 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  84 WLPKAHVEAPVSGSMILAgIMLKLGGYGLLRV--LPFLQLMGL--KFNYIWisisLVGGVLVSLIC-----LRQTDLKAL 154
Cdd:PRK12666 232 WLPPAYAAASAPVAALFA-IMTKVGIYAILRLstLLFGPEAGAsaGFGQDW----LLPGGLATLAFgaigvLAAQRLRRL 306

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 432141329 155 IAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLA 199
Cdd:PRK12666 307 AAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-226 9.67e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 9.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   2 IPTLFLILGWGYQPERL---QAGMYLLFYTLFVSLPMLVGIFYVYSFAGTMNFYLLNNFMFELELLYFSLVMAF---LVK 75
Cdd:PRK12644 137 LTTVLSFLLIGHYAERAasrRAALQALLVTTAGGLAMLVGIIILGQAAGTYRLSELLADPPTGPAVSVAVVLILvgaLSK 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  76 MPMFLVHLWLPKAhVEAPVSGSMIL-AGIMLKLGGYGLLRVLPflqlmGLKFNYIWISISLVGGVLVSLI----CLRQTD 150
Cdd:PRK12644 217 SAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAP-----GFADVPVWRPTVLVLGLATMLLggwrALRQHD 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 151 LKALIAYSSVAHMG--IVLAGLMT--MTYSGIcgsyTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFMPSMAL 226
Cdd:PRK12644 291 LKLILAYGTVSQLGflTVLVGIGTrdAALAGL----AMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAV 366
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 6-170 1.38e-04

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 42.60  E-value: 1.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   6 FLILGWGYQPERLQAG-MYLLFYTLFVSLPMLVGIFYVYSFAGTMNF-YLLNN---------FMFELELLyfsLVMAFlV 74
Cdd:PRK12645 147 FLLISYWYEREASRYGaQKSMLITVFGGLSMLGGFILLYIMTGSFSIrEMIANadeiqnsplFIPAMILI---LLGAF-T 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  75 KMPMFLVHLWLPKAhVEAPVSGSMIL-AGIMLKLGGYGLLRVLPFLQLMGLkfnYIWIsISLVGGVLV---SLICLRQTD 150
Cdd:PRK12645 223 KSAQFPFYIWLPDA-MEAPTPVSAYLhSATMVKAGIYLVARFTPIFAGSQV---WFWT-VTLVGLITLfwgSLNAVKQTD 297

                        170       180
                 ....*....|....*....|
gi 432141329 151 LKALIAYSSVAHMGIVLAGL 170
Cdd:PRK12645 298 LKGILAFSTVSQLGLIMSLL 317
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
68-167 5.04e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.84  E-value: 5.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  68 LVMAFLVKMPMFLVHLWLPKAhVEAPVSGSMILAGIMLKLGGYGLLRVLPFLQLMGLKfNYIWISISLVGGVLVSLICLR 147
Cdd:PRK08168 206 LVLAVILKTAQLPVHGWLIQV-MEAPTPVSALLHAGVVNLGGFVLIRFAPLLEQAPPA-RWLLVLVGLATAVLAGLVMLT 283

                         90       100
                 ....*....|....*....|
gi 432141329 148 QTDLKALIAYSSVAHMGIVL 167
Cdd:PRK08168 284 RISIKVRLAWSTVAQMGFML 303
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-222 9.82e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.81  E-value: 9.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329   2 IPTLFLILGWGYQPERLQAGMYLLFYTLFVSLPMLVGIFYVYSFAGTM-------NFYLLNNfMFELELLYFSLVMAFL- 73
Cdd:PRK12649 145 ITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYdiatilqDSELIEN-IKGHPLFLITLILIFIg 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  74 --VKMPMFLVHLWLPKAhVEAPVSGSMIL-AGIMLKLGGYGLLRVLPFLQlmGLKFNYIWIS-ISLVGGVLVSLICLRQT 149
Cdd:PRK12649 224 aaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPIFS--GTEAWFILVSgTGMITMVLAGFLAFRQT 300

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 150 DLKALIAYSSVAHmgivLAGLMTM----TYS----GICGSYTLMIAHGLCSSGLFCLANISYERLGSRSLLINKGLLNFM 221
Cdd:PRK12649 301 DIKAILAYSTISQ----LAYLMTMygytTYHepglGVAAATFHLLNHATFKACLFLVAGIVAHEAATRDIRKLGGLRKEM 376


                 .
gi 432141329 222 P 222
Cdd:PRK12649 377 P 377
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 36-196 1.34e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 39.23  E-value: 1.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329  36 LVGIFYVYSFAGTMNFYLLNNFMFElELLYFSLVMAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAgIMLKLGgygllrV 115
Cdd:MTH00199 165 LFGCALLYGLTGETSIQGINSILTG-DVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLA-TVPKIG------V 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 116 LPFLQLMGLKFNYIWISislvggVLVSLIC-----LRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGL 190
Cdd:MTH00199 237 FSILVQIGPVTNVVLIC------AVLSIIYgaigaLNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIYVI 310


                 ....*.
gi 432141329 191 CSSGLF 196
Cdd:MTH00199 311 MSICSF 316
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
126-226 3.01e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.09  E-value: 3.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 432141329 126 FNYIWISISLVGGVLVSLICLRQTDLKALIAYSSVAHMGIVLAGLMTMTYSGICGSYTLMIAHGLCSSGLFCLANISYER 205
Cdd:PRK06277 265 AQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYR 344

                         90       100
                 ....*....|....*....|.
gi 432141329 206 LGSRSLLINKGLLNFMPSMAL 226
Cdd:PRK06277 345 TKTSNLRKLGGLLPVMPVVAF 365
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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