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Conserved domains on  [gi|431822387|ref|NP_001258879|]
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tubulin polyglutamylase complex subunit 2 isoform 3 [Homo sapiens]

Protein Classification

SMI1/KNR4 family protein( domain architecture ID 10657291)

SMI1/KNR4 family protein may be involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation

CATH:  3.40.1580.10
PubMed:  8289782
SCOP:  4002285

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
 44-149 3.98e-13

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


:

Pssm-ID: 214864  Cd Length: 127  Bit Score: 64.58  E-value: 3.98e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431822387    44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKL------------------DASDDQPEKPHFDSRSVIFELD 105
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELplgglslldlleleaaieDQEEIDSDIEEEEYALPGWLIF 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 431822387   106 SCNGSGKVCLVYKSGKPALAEDTE--IWFLDRALYWHFLTDTFTAY 149
Cdd:smart00860  81 IADGGGGGILIDLDDGPGGEGGEVgvILFGDDDDEKYVVADSFEEF 126
 
Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
 44-149 3.98e-13

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


Pssm-ID: 214864  Cd Length: 127  Bit Score: 64.58  E-value: 3.98e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431822387    44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKL------------------DASDDQPEKPHFDSRSVIFELD 105
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELplgglslldlleleaaieDQEEIDSDIEEEEYALPGWLIF 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 431822387   106 SCNGSGKVCLVYKSGKPALAEDTE--IWFLDRALYWHFLTDTFTAY 149
Cdd:smart00860  81 IADGGGGGILIDLDDGPGGEGGEVgvILFGDDDDEKYVVADSFEEF 126
 
Name Accession Description Interval E-value
SMI1_KNR4 smart00860
SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan ...
 44-149 3.98e-13

SMI1 / KNR4 family; Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.


Pssm-ID: 214864  Cd Length: 127  Bit Score: 64.58  E-value: 3.98e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431822387    44 PAERHMISSWEQKNNCVMPEDVKNFYLMTNGFHMTWSVKL------------------DASDDQPEKPHFDSRSVIFELD 105
Cdd:smart00860   1 PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELplgglslldlleleaaieDQEEIDSDIEEEEYALPGWLIF 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 431822387   106 SCNGSGKVCLVYKSGKPALAEDTE--IWFLDRALYWHFLTDTFTAY 149
Cdd:smart00860  81 IADGGGGGILIDLDDGPGGEGGEVgvILFGDDDDEKYVVADSFEEF 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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