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Conserved domains on  [gi|431695182|gb|ELJ60518|]
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D-methionine transport system permease metI [Escherichia coli KTE180]

Protein Classification

methionine ABC transporter permease MetI( domain architecture ID 10793476)

methionine ABC transporter permease MetI is part of the binding-protein-dependent transport system for D-methionine and the toxic methionine analog alpha-methyl-methionine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.15e-135

D-methionine ABC transporter permease MetI;


:

Pssm-ID: 182726  Cd Length: 217  Bit Score: 377.54  E-value: 4.15e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   1 MSEPMIWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTISAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782   1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 431695182 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.15e-135

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 377.54  E-value: 4.15e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   1 MSEPMIWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTISAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782   1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 431695182 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 7.96e-90

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 263.07  E-value: 7.96e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   1 MSEPMIWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTISAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011    4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011   84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 431695182 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:COG2011  164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-177 1.06e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 1.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  14 WETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianaKLYRTISAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261   75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154


                 ....*..
gi 431695182 171 GLGQIGY 177
Cdd:cd06261  155 EAPGPGT 161
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 9-147 1.60e-10

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 58.71  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182    9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtRPGQIIANAKLYRTISAIVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 431695182   89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-217 4.92e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 4.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   49 NAKLYRTISAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAG 207
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170

                         170
                  ....*....|
gi 431695182  208 DRIVRAVTRK 217
Cdd:pfam00528 171 DILQRLLDPR 180
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.15e-135

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 377.54  E-value: 4.15e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   1 MSEPMIWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTISAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782   1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 431695182 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 7.96e-90

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 263.07  E-value: 7.96e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   1 MSEPMIWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTISAIVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011    4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011   84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 431695182 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
Cdd:COG2011  164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 13-144 2.95e-16

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 73.94  E-value: 2.95e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  13 VWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiianaKLYRTISAIVNIFRSIPFIILLVWMIPFTrvivgtSIGLQAA 92
Cdd:COG1174   20 LLEHLLLVLLALLIALLIAVPLGILITRRR--------RLAGLVLGVANILQTIPSLALLALLIPLL------GIGPAPA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 431695182  93 IVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALP 144
Cdd:COG1174   86 IIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALP 137
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 8-148 3.67e-15

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 71.26  E-value: 3.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVllyvtrpGQIIANAKLYRTISAIVNIFRSIPFIILLVW---MIPFtrviVG 84
Cdd:COG0765   14 LLLEGLLVTLLLTVLAIVLGLVLGLLLAL-------ARLSPNPVLRWLATAYVEFFRGTPLLVQLFFiyfGLPL----LG 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 431695182  85 TSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEA----LPGLVN 148
Cdd:COG0765   83 IDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQAlriiLPPLGN 151
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 12-150 9.70e-14

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 68.58  E-value: 9.70e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  12 GVWETLAMTFVSGFFGFVIGLPVGVL--LYVTRpgqiIANAKLYRTISAIVNIFRSIPFIIL----LVWMIPFTRVIV-- 83
Cdd:COG0573   74 GILPLIVGTLLVSLIALLIAVPLGLGiaIFLSE----YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDLFpw 149

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 431695182  84 -GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAA 150
Cdd:COG0573  150 pPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-177 1.06e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.53  E-value: 1.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  14 WETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianaKLYRTISAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261   75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154


                 ....*..
gi 431695182 171 GLGQIGY 177
Cdd:cd06261  155 EAPGPGT 161
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 9-158 8.80e-13

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 65.17  E-value: 8.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianakLYRTISAIVNIFRSIPFIILlvwmIPFTRVIVGtsIG 88
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL--------LRRLLDPLLVFLRPIPPLAL----APLLILWFG--IG 124

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 431695182  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALP----GLVNAATITLITLV 158
Cdd:COG0600  125 EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPyiftGLRIALGLAWIGLV 198
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 6-148 1.16e-12

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 64.72  E-value: 1.16e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   6 IWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLlyVTRPgqIIANAKLYRTISAIVNIFRSIPfiiLLVWMIPFTRvIVGt 85
Cdd:COG3639   46 LPDLLSALLETLAIALLGTLLGAVLALPLAFL--AARN--LAPNPWVRLLARRLLNVLRAIP---ELVWALIFVA-AVG- 116

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 431695182  86 sIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVN 148
Cdd:COG3639  117 -LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 16-154 1.13e-10

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 59.28  E-value: 1.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  16 TLAMTFVSGFFGFVIGLPVGVLLYVTRPGqiianAKLYRTISAIVNIFRSIPFII-----LLVWMIPFtrvivGTSIGLQ 90
Cdd:COG0581   46 TLLLVLLATLIAVPLGVLAAIYLAEYARG-----GRLARLIRFAIDVLAGVPSIVyglfgYALFVLTL-----GLGFSLL 115

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 431695182  91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:COG0581  116 AGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAI 179
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 9-147 1.60e-10

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 58.71  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182    9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLlyvtRPGQIIANAKLYRTISAIVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 431695182   89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 9-156 1.82e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 1.82e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLL-YVTRpgqiianaKLYRTISAIVNIFRSIPFIILLVWMIpftrVIVGTSI 87
Cdd:COG1173   74 LLYGARISLLVGLLAVLIALVIGVLLGLLAgYFGG--------WVDAVLMRLVDVLLAFPSLLLAIALV----AVLGPGL 141

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  88 GLqaAIVPLTVGAAPFIARMVENALLEIPT-GLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1173  142 LN--VILALGLTGWPGYARLVRAQVLSLRErEYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-217 4.92e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 4.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   49 NAKLYRTISAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  128 ATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAG 207
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170

                         170
                  ....*....|
gi 431695182  208 DRIVRAVTRK 217
Cdd:pfam00528 171 DILQRLLDPR 180
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 20-154 1.03e-08

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 54.20  E-value: 1.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   20 TFVSGFFGFVIGLPVGVL--LYVTrpgqIIANAKLYRTISAIVNIFRSIPFIILLVW----MIPFTRVIVGTSIGLQAAI 93
Cdd:TIGR02138  68 TLITSLIALLIAVPVGIGiaIFLS----EIAPKRVRSVLKPVVELLAGIPSVVYGFWglfvLVPFLKPHFQPFLGSNLGL 143

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 431695182   94 VPLTVGAA------------PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITL 154
Cdd:TIGR02138 144 IPLFGGPIltagivlaimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGL 216
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-155 5.99e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 52.09  E-value: 5.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTR-PGQiianaklyRTISAIVNIFRSIP-FIILLVWMI---------P 77
Cdd:COG1178   52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDfPGR--------RLLRWLLLLPLALPpYVVALAWIAlfgpngllnT 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  78 FTRVIVGTSI----GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153
Cdd:COG1178  124 LLRALFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLV 203


                 ..
gi 431695182 154 LI 155
Cdd:COG1178  204 FL 205
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 9-156 4.30e-07

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 48.95  E-value: 4.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPgqiianaKLYRTISAIVNIFRSIPFIILLVWMIPFTrVIVGTSIG 88
Cdd:COG1177   59 LLDALLNSLLIALLSTLLATVLGTPAALALARYRF-------RGRRLLLALLLLPLVVPGIVLGVALLLLF-SALGLSGG 130

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 431695182  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1177  131 LWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTL 198
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-159 6.13e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 49.00  E-value: 6.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiianAKLYRTISAIVNIFRSIPFIIL-LVWMIPFTRVIVGTSI 87
Cdd:COG1178  336 LLRALLNSLLLALLAALLAVLLALLLAYLVRRRR-------GRLARLLDRLAMLPYAVPGIVLgLGLLLLFNRPLPLLLY 408

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 431695182  88 GLQAAIV-PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1178  409 GTLAILVlAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 102-159 1.16e-06

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 47.83  E-value: 1.16e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 431695182 102 PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1176  167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 68-160 1.41e-06

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 47.78  E-value: 1.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  68 FIILLVWMIPFTRVIVGT-----SIGL----QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVL 138
Cdd:COG0395  114 LLILATLMIPGQVLLIPLyllfrQLGLlntyWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIV 193

                         90       100
                 ....*....|....*....|..
gi 431695182 139 LPEALPGLvnaATITLITLVGY 160
Cdd:COG0395  194 LPLSKPAL---ATVAIFTFIGA 212
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 101-155 1.44e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 47.69  E-value: 1.44e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 431695182 101 APFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK15050 173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 6-143 1.72e-06

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 46.97  E-value: 1.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   6 IWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqIIANAKLYRTISAIVNIFRSIPfIILLVWMIPFTRVIVGT 85
Cdd:PRK09494   8 IWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFAR---AYGGWIANHIALVFIELIRGTP-IVVQVMFIYFALPMAFN 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 431695182  86 SI---GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEAL 143
Cdd:PRK09494  84 DLridPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLAL 144
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
16-155 8.24e-06

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 45.47  E-value: 8.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  16 TLAMTFVSGFFGFVIGLPVGVLLyvtrpgqiianAKLYRTISAIVNIFRSIPFIILLVWMIPftrVIVGTSIGLQAAIVP 95
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIWL-----------ARSPRAAKIIRPLLDAMQTTPAFVYLVP---IVMLFGIGNVPGVVV 214

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  96 LTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK10952 215 TIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLM 274
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
4-147 1.43e-05

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 44.44  E-value: 1.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   4 PMIWLLVRGVWETLAMTFVSgffgFVIGLPVGVLLYVTRPGQIIANAKLYRtisAIVNIFRSIPFIILLVW---MIP-FT 79
Cdd:PRK15107  11 PSLPYLLDGLVITLKITVTA----VVIGILWGTILAVMRLSSFKPVAWFAK---AYVNVFRSIPLVMVLLWfylIVPgFL 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 431695182  80 RVIVG----TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:PRK15107  84 QNVLGlspkTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMV 155
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 8-159 3.33e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 43.52  E-value: 3.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182   8 LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRpgqiiaNAKLYRTISAIVNIFRSIP---FIILLVW---------- 74
Cdd:COG0601   90 LIAERLPVTLELALLALLLALLIGIPLGILAALRR------GSWLDRLITVLALLGISIPsfwLGLLLILlfavklgwlp 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  75 ---MIPFTRVIVGtsiGLQAAIVP---LTVGAAPFIARMVENALLEIptgL----IEASRAMGATPMQIVRKVLLPEALP 144
Cdd:COG0601  164 vsgRVSPWEDFLD---ALRHLILPaltLALGSLAGIARLTRSSMLEV---LgqdyVRTARAKGLSERRVLLRHALRNALI 237

                        170
                 ....*....|....*
gi 431695182 145 GLVNAATITLITLVG 159
Cdd:COG0601  238 PVVTVLGLQLGGLLG 252
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
74-159 3.93e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 40.51  E-value: 3.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  74 WMIPFTRVIVGTSIGLQAAivpLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153
Cdd:PRK10971 128 WLAKFDIKVTYTWLGIAVA---MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204


                 ....*.
gi 431695182 154 LITLVG 159
Cdd:PRK10971 205 FTRSLG 210
cysT CHL00187
sulfate transport protein; Provisional
 85-153 5.05e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 36.92  E-value: 5.05e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 431695182  85 TSIGLQAAIVPLTVGAA------PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153
Cdd:CHL00187 127 SHLGIQIVFTKLGVLLAmifvsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 6-74 7.70e-03

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 34.82  E-value: 7.70e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 431695182    6 IWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVtrpgqiiANAKLYRTISAIVNIFRSIPFIILLVW 74
Cdd:TIGR01726   2 LPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLS-------GNRPLRWIATVYVELFRGTPLLVQLFF 63
nikC PRK10417
nickel transporter permease NikC; Provisional
 59-152 7.97e-03

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 36.57  E-value: 7.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  59 IVNIFRSIPFIILLVWMIPftrvIVGTsiGLQAAIVPLTVGAAPFIARMVENALLEIPT-GLIEASRAMGATPMQIVRKV 137
Cdd:PRK10417 105 VADMFMTFPTSILAFFMVG----VLGT--GLTNVIIAIALSHWAWYARMVRSLVISLRQrEFVLAARLSGAGHVRVFIDH 178

                         90
                 ....*....|....*
gi 431695182 138 LLPEALPGLVNAATI 152
Cdd:PRK10417 179 LLPAVIPQLLVLATL 193
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
13-147 9.71e-03

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 36.07  E-value: 9.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 431695182  13 VWETLAMTFVSGFFGFVIG----LPVGVLLYVTRPGQiianaklyRTISAIVNIFRSIPFIILlvwmIPFtrVIVGTSIG 88
Cdd:PRK11365  58 LWQHLAISSWRALIGFSIGgslgLILGLISGLSRWGE--------RLLDTSIQMLRNVPHLAL----IPL--VILWFGID 123

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 431695182  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
Cdd:PRK11365 124 ESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIM 182
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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